mRNA_M-pyrifera_M_contig83359.19467.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83359.19467.1
Unique NamemRNA_M-pyrifera_M_contig83359.19467.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7S3RUS6_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RUS6_EMIHU)

HSP 1 Score: 90.1 bits (222), Expect = 1.600e-19
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   10 RRIQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGANAHRHVATCPEK 186
            R +QE +L L+CPRC+A FLDF GCFAL C RC C FCA CL DCG +AH+HV  CP +
Sbjct:  922 RHVQERILTLKCPRCEAAFLDFNGCFALTCHRCQCGFCAYCLADCGRDAHQHVQQCPHR 980          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7S3B0A1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B0A1_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 4.620e-19
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   22 EEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGANAHRHVATCPEKAVVG 198
            E +L L CPRC+A FLDF GCFAL C RC   FCA CL DCGA+AH HV  CP +   G
Sbjct:    1 ERILTLHCPRCEAAFLDFNGCFALTCHRCRAGFCAYCLMDCGADAHTHVVQCPHRLQEG 59          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7S4CQJ0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CQJ0_9EUGL)

HSP 1 Score: 86.7 bits (213), Expect = 2.260e-18
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   10 RRIQEEVLLLRCPR--CQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGANAHRHVATCPEK 186
            R I E++L LRCPR  C   F+DFTGCFAL C+RCPC+FC  CL DCG +AH HV TCP++
Sbjct:  334 RSITEQILNLRCPRLDCAHVFVDFTGCFALACSRCPCNFCGWCLADCGTDAHAHVRTCPQR 394          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7S0PY92_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PY92_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 6.350e-18
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 RRRIQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGANAHRHVATCPEK 186
            R R+ +E+L ++CPRC   FLDF GCFAL+C++CPC FC  CL DCG +AH HV TC  K
Sbjct:  390 RLRVIDEILTMQCPRCSQAFLDFEGCFALKCSKCPCGFCGWCLADCGTDAHSHVRTCAAK 449          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7S2CZM3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2CZM3_9DINO)

HSP 1 Score: 80.9 bits (198), Expect = 9.300e-18
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    7 RRRIQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCG-ANAHRHVATCPEK 186
            R  I EE+L L+CPRC   FLDF GCFALQC+RCPC FCA C  D G +NAH HV  C EK
Sbjct:   80 RNHICEEILNLKCPRCGQVFLDFVGCFALQCSRCPCGFCAWCGADSGGSNAHEHVRNCREK 140          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7S0T053_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T053_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 3.350e-17
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   16 IQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGANAHRHVATCPE 183
            I E +L L CPRC+  FLDF GCFAL C+RC   FCA CL DCG +AH+HV TCPE
Sbjct:  141 IIEGILTLCCPRCKQAFLDFDGCFALNCSRCSAGFCAYCLADCGRDAHQHVGTCPE 196          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A8J5XJ21_DIALT (AAA_12 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ21_DIALT)

HSP 1 Score: 82.8 bits (203), Expect = 5.960e-17
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   16 IQEEVLLLRCPRCQAPFLDFTGCFALQCTR--CPCHFCAVCLTDCGANAHRHVATCPE 183
            I E +L LRCPRC+  F+DF+GCFAL C+R  C C FCA CL DCGA+AH+HV+ CP+
Sbjct:  730 IVETILTLRCPRCRQAFVDFSGCFALTCSRQGCGCGFCAWCLADCGADAHKHVSACPQ 787          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7S2J841_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2J841_9DINO)

HSP 1 Score: 82.4 bits (202), Expect = 7.200e-17
Identity = 39/61 (63.93%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    7 RRRIQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCG-ANAHRHVATCPEK 186
            R  I EE+L L+CPRC   FLDF GCFALQC+RCPC FCA C  D G +NAH HV  C EK
Sbjct:  337 RNHIVEEILTLKCPRCGQAFLDFVGCFALQCSRCPCGFCAWCGADSGGSNAHEHVRNCREK 397          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: A0A7R9TVI3_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TVI3_MICPS)

HSP 1 Score: 81.6 bits (200), Expect = 7.530e-17
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    7 RRRIQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGANAHRHVATCPEKA 189
            R  + E++L L CPRC   F+DF GCFAL C+RC   FCA CL DCG +AH HV +CPE A
Sbjct:  159 REHVVEKILTLSCPRCTQAFVDFEGCFALNCSRCRAAFCAYCLADCGKDAHAHVGSCPEGA 219          
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Match: C1MYC9_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MYC9_MICPC)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-16
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    7 RRRIQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGANAHRHVATCPEKA 189
            R  + E++L L CPRC   F+DF GCFAL C+RC   FCA CL DCG +AH HV +CPE A
Sbjct:  184 REHVVEKILTLSCPRCTQAFVDFEGCFALNCSRCRAAFCAYCLADCGKDAHAHVGSCPEGA 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83359.19467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3RUS6_EMIHU1.600e-1962.71Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3B0A1_9EUKA4.620e-1961.02Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4CQJ0_9EUGL2.260e-1862.30Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0PY92_9EUKA6.350e-1858.33Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2CZM3_9DINO9.300e-1863.93Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S0T053_9CHLO3.350e-1764.29Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A8J5XJ21_DIALT5.960e-1762.07AAA_12 domain-containing protein n=1 Tax=Diacronem... [more]
A0A7S2J841_9DINO7.200e-1763.93Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7R9TVI3_MICPS7.530e-1757.38Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1MYC9_MICPC1.060e-1657.38Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83359contigM-pyrifera_M_contig83359:639..884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue3e-14
Seed eggNOG ortholog38833.XP_003060262.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZ7U@1,2S8YG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.5343595-CDS-M-pyrifera_M_contig83359:638..7561622816740.5343595-CDS-M-pyrifera_M_contig83359:638..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83359 639..756 -
1692278150.4007092-CDS-M-pyrifera_M_contig83359:638..7561692278150.4007092-CDS-M-pyrifera_M_contig83359:638..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83359 639..756 -
1622816740.5468414-CDS-M-pyrifera_M_contig83359:804..8841622816740.5468414-CDS-M-pyrifera_M_contig83359:804..884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83359 805..884 -
1692278150.413103-CDS-M-pyrifera_M_contig83359:804..8841692278150.413103-CDS-M-pyrifera_M_contig83359:804..884Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83359 805..884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83359.19467.1prot_M-pyrifera_M_contig83359.19467.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83359 639..884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83359.19467.1

>prot_M-pyrifera_M_contig83359.19467.1 ID=prot_M-pyrifera_M_contig83359.19467.1|Name=mRNA_M-pyrifera_M_contig83359.19467.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
MHRRRIQEEVLLLRCPRCQAPFLDFTGCFALQCTRCPCHFCAVCLTDCGA
NAHRHVATCPEKAVVG
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mRNA from alignment at M-pyrifera_M_contig83359:639..884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83359.19467.1 ID=mRNA_M-pyrifera_M_contig83359.19467.1|Name=mRNA_M-pyrifera_M_contig83359.19467.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig83359:639..884- (Macrocystis pyrifera P11B4 male)
ATGCATAGGCGCCGTATCCAGGAGGAAGTCTTGCTTCTGCGCTGCCCCAG GTGTCAAGCGCCCTTCCTCGACTTCACAGGGTGGGTCGGCCGCCGAGTTG TGGAAAGGCCAGCTGCTGACGAAGGCAGATGCTTTGCTCTCCAGTGCACC AGATGTCCTTGCCATTTCTGCGCCGTGTGCCTGACCGACTGTGGCGCAAA CGCACACAGGCATGTGGCTACCTGCCCCGAGAAGGCAGTCGTAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83359:639..884-

>mRNA_M-pyrifera_M_contig83359.19467.1 ID=mRNA_M-pyrifera_M_contig83359.19467.1|Name=mRNA_M-pyrifera_M_contig83359.19467.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig83359:639..884- (Macrocystis pyrifera P11B4 male)
ATGCATAGGCGCCGTATCCAGGAGGAAGTCTTGCTTCTGCGCTGCCCCAG
GTGTCAAGCGCCCTTCCTCGACTTCACAGGATGCATAGGCGCCGTATCCA
GGAGGAAGTCTTGCTTCTGCGCTGCCCCAGGTGTCAAGCGCCCTTCCTCG
ACTTCACAGGATGCTTTGCTCTCCAGTGCACCAGATGTCCTTGCCATTTC
TGCGCCGTGTGCCTGACCGACTGTGGCGCAAACGCACACAGGCATGTGGC
TACCTGCCCCGAGAAGGCAGTCGTAGGGATGCTTTGCTCTCCAGTGCACC
AGATGTCCTTGCCATTTCTGCGCCGTGTGCCTGACCGACTGTGGCGCAAA
CGCACACAGGCATGTGGCTACCTGCCCCGAGAAGGCAGTCGTAGGG
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