mRNA_M-pyrifera_M_contig8334.19463.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8334.19463.1
Unique NamemRNA_M-pyrifera_M_contig8334.19463.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Match: D8LRN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.630e-33
Identity = 80/152 (52.63%), Postives = 90/152 (59.21%), Query Frame = 1 
Query:    1 HSRLVLLWQNSVEEDLFCADELTILQAKAKGLLEVMVLISGDTTRRNVPGNAFRRAKARLLKKGIKAGLVSRG---LDGSGQDGDRFDEDNLGG----TPFHRLELPRALSRVTEEDCMS--------RDGSFMHNISGLSDRDLEAGASGG 411
            HSRLVLLWQNSVE DL+C DELT LQAKA GLLEV  L+SGD TRRN+PGN FRRA ARL+ KG  AGLVSRG   +D    D +  D+         T   RL+    LSRV+EED           R G F   +S    RDLE    GG
Sbjct:   16 HSRLVLLWQNSVEADLYCTDELTALQAKANGLLEVTALMSGDITRRNIPGNTFRRAIARLMSKGAAAGLVSRGEREVDSDTGDAEHVDDAGRAAAALPTNLPRLQSVGELSRVSEEDSTRTRWSKSPCRRGLFASGVS----RDLETVGGGG 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.840e-24
Identity = 72/131 (54.96%), Postives = 77/131 (58.78%), Query Frame = 1 
Query:   28 NSVEEDLFCADELTILQAKAKGLLEVMVLISGDTTRRNVPGNAFRRAKARLLKKGIKAGLVSRG---LDGSGQDGDRFDEDNLGGTPFHRLELPRALSRVTEEDCMSRDGSFMHNISGL----SDRDLEAG 399
            NSVE DL+C DELT LQAKA GLLEV  LISGD TRRNVPGNAFR AKARL+KKG  AGLV  G   +D    D    D+D L      RL     LS V+EED     GS      GL      RDLE G
Sbjct:  637 NSVEADLYCTDELTALQAKANGLLEVTALISGDNTRRNVPGNAFRHAKARLMKKGAAAGLVPLGEREVDSDTGDAKDDDDDALPAN-LPRLWSVSELSCVSEEDSSHTRGSQSTLSLGLFVSAGSRDLETG 766
[Close]
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.860e-18
Identity = 60/117 (51.28%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:   70 ILQAKAKGLLEVMVLISGDTTRRNVPGNAFRRAKARLLKKGIKAGLVSRG---LDGSGQDGDRFDEDNLGGTPFHRLELPRALSRVTEEDCMSRDGSFMHNISGLSD----RDLEAG 399
            +++AKA GLLEV  LISGD TRRN+PGN FRRAKARL+KKG  AGLV RG   +D    D    D+D L      RL     LSRV+EED     GS      G+ D    RDLE G
Sbjct:  784 LIKAKANGLLEVTALISGDHTRRNIPGNTFRRAKARLMKKGAAAGLVPRGEREVDSDTGDAKNDDDDALPAN-LPRLWSVSELSRVSEEDSSHTGGSKSTRSLGVFDSTGSRDLETG 899
[Close]
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.590e-12
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    4 SRLVLLWQNSVEEDLFCADELTILQAKAKGLLEVMVLISGDTTRRNVPGNAFRRAKARLLK 186
            SRL L+WQ+  E +L+ ++E+T +QAK+KGLLEV+VL+SGD  RRNVPG AFRR K  + K
Sbjct: 1116 SRLCLIWQSMSEAELYGSEEITEMQAKSKGLLEVIVLVSGDQRRRNVPGAAFRRGKKMMSK 1176
[Close]
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.950e-12
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    4 SRLVLLWQNSVEEDLFCADELTILQAKAKGLLEVMVLISGDTTRRNVPGNAFRRAKARLLKKGIKAGLVS 213
            SRL L+WQ + E DL+ ++E+T LQAK+ GLLEV VLISG+  +RN+PG AFR+   +LL    K GLVS
Sbjct: 1604 SRLALVWQATSEADLYGSEEMTELQAKSNGLLEVTVLISGEHRKRNIPGAAFRKGAGKLL---AKTGLVS 1670
[Close]
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.670e-11
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    4 SRLVLLWQNSVEEDLFCADELTILQAKAKGLLEVMVLISGDTTRRNVPGNAFRRAKARLLKKGIKAGLVS 213
            SRL L+WQ + E DLF ADE+  +Q K+ GLLEV++LISG   +RN+PG AFR+     LK   KAGL+S
Sbjct: 1365 SRLALVWQATSEADLFGADEIAAMQEKSDGLLEVVMLISGQHRKRNIPGAAFRKGAETFLK---KAGLIS 1431
[Close]
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Match: A0A6H5JTF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 7.980e-8
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    7 RLVLLWQNSVEEDLFCADELTILQAKAKGLLEVMVLISGDTTRRNVPGNAFRRAK 171
            RLVL+WQ++ E D +  DE+T +Q K+ GLLEV  L S    RRN PG AFR+A+
Sbjct:   24 RLVLVWQSTTEADFYSTDEITAMQEKSNGLLEVTALTSEGGRRRNAPGAAFRKAR 78
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8334.19463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRN3_ECTSI1.630e-3352.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC42_9PHAE5.840e-2454.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB74_ECTSI1.860e-1851.28Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
D7FQW8_ECTSI2.590e-1259.02Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JBL8_9PHAE4.950e-1255.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE6_ECTSI1.670e-1154.29Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JTF1_9PHAE7.980e-852.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8334contigM-pyrifera_M_contig8334:2489..3408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue8.5e-11
Seed eggNOG ortholog2880.D7FQW8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.360293-CDS-M-pyrifera_M_contig8334:2488..29591622816740.360293-CDS-M-pyrifera_M_contig8334:2488..2959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8334 2489..2959 -
1692278150.331446-CDS-M-pyrifera_M_contig8334:2488..29591692278150.331446-CDS-M-pyrifera_M_contig8334:2488..2959Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8334 2489..2959 -
1622816740.3717222-CDS-M-pyrifera_M_contig8334:3330..34081622816740.3717222-CDS-M-pyrifera_M_contig8334:3330..3408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8334 3331..3408 -
1692278150.3439467-CDS-M-pyrifera_M_contig8334:3330..34081692278150.3439467-CDS-M-pyrifera_M_contig8334:3330..3408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8334 3331..3408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8334.19463.1prot_M-pyrifera_M_contig8334.19463.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8334 2489..3408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8334.19463.1

>prot_M-pyrifera_M_contig8334.19463.1 ID=prot_M-pyrifera_M_contig8334.19463.1|Name=mRNA_M-pyrifera_M_contig8334.19463.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
HSRLVLLWQNSVEEDLFCADELTILQAKAKGLLEVMVLISGDTTRRNVPG
NAFRRAKARLLKKGIKAGLVSRGLDGSGQDGDRFDEDNLGGTPFHRLELP
RALSRVTEEDCMSRDGSFMHNISGLSDRDLEAGASGGHDSFRNTSTLRDS
LESGGGNSSLSWSSRRGGGGGGGSGRKKGSAKG
back to top

mRNA from alignment at M-pyrifera_M_contig8334:2489..3408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8334.19463.1 ID=mRNA_M-pyrifera_M_contig8334.19463.1|Name=mRNA_M-pyrifera_M_contig8334.19463.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=920bp|location=Sequence derived from alignment at M-pyrifera_M_contig8334:2489..3408- (Macrocystis pyrifera P11B4 male)
CACTCGAGGCTGGTGCTTCTGTGGCAAAACAGCGTGGAAGAAGACCTCTT
CTGCGCTGATGAGCTGACGATTCTGCAGGTAAAGTCGTGATCTCGCCGAC
CGGGAAGACCTTGGGGCAAGAGAGACCCCCCCAGACACACACGCCCTTGA
GCGTGCGTCTGCGCAAGTCCCTCCCCCTGGGCTGCTCGCGAAATCAAATA
AACTGGACAGTCACACACCGTCAAACGCGGCTGACTAAACCCTTCCCGAA
CCCCGCTATTTCATCTTATTAACTCTTGGTCGGTTGCGCAAGGTTCCTGA
ACACGACAATACGCCACAGCTTGCCCTTCTTAACAGAAACTTTGGCAACC
ATATCGCCCCTATGAAATACCACTGAACCGTAAAGCCCCCTCTACCCACA
CACACCCTGCCCGCATTTGTCCGTGTTCAACGCCTCAAAACAAAACAAGG
CGAAAGCAAAGGGCCTACTAGAGGTGATGGTTCTCATTAGCGGGGACACC
ACGCGGCGCAACGTTCCTGGCAACGCATTCCGCCGCGCGAAGGCGAGGCT
CCTCAAAAAGGGCATTAAGGCCGGGTTGGTCAGCAGGGGCTTAGACGGCA
GCGGGCAGGACGGTGACAGATTCGACGAAGATAACCTCGGAGGCACGCCC
TTCCACCGCCTCGAGCTGCCGAGAGCGCTGTCACGCGTTACCGAAGAGGA
CTGCATGAGCCGCGACGGCAGCTTCATGCACAACATCAGCGGACTCAGCG
ACAGGGATCTAGAGGCCGGCGCTAGTGGCGGCCACGACAGCTTCCGCAAC
ACCTCGACCCTTCGCGACTCTCTCGAAAGTGGCGGCGGCAACAGTAGCTT
ATCGTGGTCGTCGCGCCGCGGCGGCGGAGGGGGAGGAGGATCAGGCCGGA
AGAAAGGGAGCGCTAAAGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8334:2489..3408-

>mRNA_M-pyrifera_M_contig8334.19463.1 ID=mRNA_M-pyrifera_M_contig8334.19463.1|Name=mRNA_M-pyrifera_M_contig8334.19463.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig8334:2489..3408- (Macrocystis pyrifera P11B4 male)
CACTCGAGGCTGGTGCTTCTGTGGCAAAACAGCGTGGAAGAAGACCTCTT
CTGCGCTGATGAGCTGACGATTCTGCAGCACTCGAGGCTGGTGCTTCTGT
GGCAAAACAGCGTGGAAGAAGACCTCTTCTGCGCTGATGAGCTGACGATT
CTGCAGGCGAAAGCAAAGGGCCTACTAGAGGTGATGGTTCTCATTAGCGG
GGACACCACGCGGCGCAACGTTCCTGGCAACGCATTCCGCCGCGCGAAGG
CGAGGCTCCTCAAAAAGGGCATTAAGGCCGGGTTGGTCAGCAGGGGCTTA
GACGGCAGCGGGCAGGACGGTGACAGATTCGACGAAGATAACCTCGGAGG
CACGCCCTTCCACCGCCTCGAGCTGCCGAGAGCGCTGTCACGCGTTACCG
AAGAGGACTGCATGAGCCGCGACGGCAGCTTCATGCACAACATCAGCGGA
CTCAGCGACAGGGATCTAGAGGCCGGCGCTAGTGGCGGCCACGACAGCTT
CCGCAACACCTCGACCCTTCGCGACTCTCTCGAAAGTGGCGGCGGCAACA
GTAGCTTATCGTGGTCGTCGCGCCGCGGCGGCGGAGGGGGAGGAGGATCA
GGCCGGAAGAAAGGGAGCGCTAAAGGTGCGAAAGCAAAGGGCCTACTAGA
GGTGATGGTTCTCATTAGCGGGGACACCACGCGGCGCAACGTTCCTGGCA
ACGCATTCCGCCGCGCGAAGGCGAGGCTCCTCAAAAAGGGCATTAAGGCC
GGGTTGGTCAGCAGGGGCTTAGACGGCAGCGGGCAGGACGGTGACAGATT
CGACGAAGATAACCTCGGAGGCACGCCCTTCCACCGCCTCGAGCTGCCGA
GAGCGCTGTCACGCGTTACCGAAGAGGACTGCATGAGCCGCGACGGCAGC
TTCATGCACAACATCAGCGGACTCAGCGACAGGGATCTAGAGGCCGGCGC
TAGTGGCGGCCACGACAGCTTCCGCAACACCTCGACCCTTCGCGACTCTC
TCGAAAGTGGCGGCGGCAACAGTAGCTTATCGTGGTCGTCGCGCCGCGGC
GGCGGAGGGGGAGGAGGATCAGGCCGGAAGAAAGGGAGCGCTAAAGGT
back to top