mRNA_M-pyrifera_M_contig8331.19458.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8331.19458.1
Unique NamemRNA_M-pyrifera_M_contig8331.19458.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A6H5L4N8_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4N8_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 4.660e-38
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVRVEDSNGGSTLTYGR 239
            IMKEHVFNMKDPIIVGMEVIEG LRVGTPLCIPAMGGMEIGRVTSI+QNHREVDK+ KGAS AVRV+D++GGSTLTYGR
Sbjct:  948 IMKEHVFNMKDPIIVGMEVIEGNLRVGTPLCIPAMGGMEIGRVTSIEQNHREVDKMGKGASGAVRVDDAHGGSTLTYGR 1026
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A836CHS5_9STRA (Tr-type G domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS5_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.510e-32
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVRVEDSNGGSTLTYGR 239
            IM +HVFN KDPIIVGMEVIEGTLRVGTPLCIPA+ G+ IGRV SI+ NHR+V K++KG S AVR+ED+NGGSTLTYGR
Sbjct:  895 IMPQHVFNKKDPIIVGMEVIEGTLRVGTPLCIPALEGLPIGRVASIEDNHRQVQKLAKGGSGAVRIEDANGGSTLTYGR 973
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A7R9ZL82_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZL82_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.070e-23
Identity = 44/79 (55.70%), Postives = 62/79 (78.48%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVRVEDSNGGSTLTYGR 239
            I+ +HVFN KDPIIVG+EV+EG L+VGTPLC+PA+GG+ +G+VTSI+ + RE D   KG+S A+++ +  G   +TYGR
Sbjct:   66 ILPQHVFNQKDPIIVGVEVVEGILKVGTPLCVPALGGLHVGKVTSIENSGREQDTAKKGSSVAIKIVN-EGNPNITYGR 143
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A7R9WHP7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHP7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 3.970e-22
Identity = 49/80 (61.25%), Postives = 64/80 (80.00%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVR-VEDSNGGSTLTYGR 239
            I+ +HVFN KDPIIVG+EV+EG L+VGTPLC+PA+GG+ +G+VTSI+ N RE +   KGAS AV+ V +SN   T+TYGR
Sbjct:  658 ILPQHVFNQKDPIIVGVEVVEGILKVGTPLCVPAIGGLHVGKVTSIESNGREQETAKKGASVAVKIVNESN--PTITYGR 735
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A7S1FSJ9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSJ9_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.760e-21
Identity = 41/79 (51.90%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVRVEDSNGGSTLTYGR 239
            I+ +H+FN KDPII+G+EV  G L+VGTPLC+PA+GG+ +G+VTSI+ N +++D   KG+S A ++E+ +    LTYGR
Sbjct:   47 ILPQHIFNQKDPIILGVEVTHGILKVGTPLCVPALGGLHVGKVTSIEMNGKQMDTARKGSSIACKIENESN-PNLTYGR 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A7S0CGW3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.830e-21
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVRVEDSNGGSTLTYGR 239
            I+ +H+FN KDPIIVG+EV EG L++GTPLCIPA+ G+ IG+VTSI+ N ++ D   KGAS AV++E+ +   TLTYGR
Sbjct:  247 ILPQHIFNQKDPIIVGIEVAEGILKIGTPLCIPALEGLYIGKVTSIEMNGKQQDTARKGASVAVKIENEHN-PTLTYGR 324
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A1Z5JER2_FISSO (Translation initiation factor 5B n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JER2_FISSO)

HSP 1 Score: 95.9 bits (237), Expect = 2.590e-21
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVRVEDSNGGSTLTYGR 239
            I+ +H+FN KDPIIVG+EV+EG L++GTPLC+PA+GG+ +G+VTSI+ N RE     KG+S AVR+ +  G   +TYGR
Sbjct:  855 ILPQHIFNQKDPIIVGVEVVEGILKLGTPLCVPALGGLHVGKVTSIESNGREQQSARKGSSVAVRIVN-EGNPNITYGR 932
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: B8BV18_THAPS (Tr-type G domain-containing protein n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BV18_THAPS)

HSP 1 Score: 95.5 bits (236), Expect = 3.390e-21
Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVR-VEDSNGGSTLTYGR 239
            I+ +HVFN KDPIIVG+EV+EG L+VGTPLC+PA+GG+ +G VTSI+ N RE +   KG+S A++ V +SN   T+TYGR
Sbjct:  468 ILPQHVFNQKDPIIVGVEVVEGILKVGTPLCVPALGGLTVGTVTSIESNGREQETAKKGSSVAIKIVNESN--PTITYGR 545
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: B7GD73_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD73_PHATC)

HSP 1 Score: 95.5 bits (236), Expect = 3.410e-21
Identity = 46/80 (57.50%), Postives = 63/80 (78.75%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVR-VEDSNGGSTLTYGR 239
            ++ +HVFN KDPIIVG+E++EG L+VGTPLC+PA+GG+ IG+VTSI+ N RE +   KG S A++ V +SN   T+TYGR
Sbjct:  476 VLPQHVFNQKDPIIVGVEIVEGILKVGTPLCVPALGGLHIGKVTSIEMNGREQETARKGLSVAIKIVNESN--PTITYGR 553
[Close]
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Match: A0A1E7FX92_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX92_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.450e-21
Identity = 43/79 (54.43%), Postives = 62/79 (78.48%), Query Frame = 3 
Query:    3 IMKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHREVDKVSKGASAAVRVEDSNGGSTLTYGR 239
            I+ +HVFN KDPIIVG+E++EG L++GTPLC+PA+GG+ IG+VTSI+ N +E +   KG S A+++ +  G  T+TYGR
Sbjct:  504 ILPQHVFNQKDPIIVGVEIVEGILKIGTPLCVPALGGLHIGKVTSIEMNGKEQETARKGMSVAIKILN-EGNPTITYGR 581
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8331.19458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4N8_9PHAE4.660e-3889.87Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CHS5_9STRA5.510e-3277.22Tr-type G domain-containing protein n=1 Tax=Tribon... [more]
A0A7R9ZL82_9STRA3.070e-2355.70Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7R9WHP7_9STRA3.970e-2261.25Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1FSJ9_9STRA1.760e-2151.90Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0CGW3_9STRA1.830e-2158.23Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1Z5JER2_FISSO2.590e-2155.70Translation initiation factor 5B n=2 Tax=Fistulife... [more]
B8BV18_THAPS3.390e-2158.75Tr-type G domain-containing protein n=2 Tax=Thalas... [more]
B7GD73_PHATC3.410e-2157.50Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A1E7FX92_9STRA3.450e-2154.43p-loop containing nucleoside triphosphate hydrolas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8331contigM-pyrifera_M_contig8331:9694..10763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue3.7e-32
Seed eggNOG ortholog2880.D8LKY1
Preferred nameFUN12
KEGG koko:K03243,ko:K12834
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000462,GO:0001732,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015935,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0031369,GO:0032268,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033290,GO:0034248,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG0532@1,KOG1144@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03041
Exons2
Model size240
Cds size234
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8331.19458.1prot_M-pyrifera_M_contig8331.19458.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8331 9694..10758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.050323-CDS-M-pyrifera_M_contig8331:9693..97861622816740.050323-CDS-M-pyrifera_M_contig8331:9693..9786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8331 9694..9786 -
1692278150.1539845-CDS-M-pyrifera_M_contig8331:9693..97861692278150.1539845-CDS-M-pyrifera_M_contig8331:9693..9786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8331 9694..9786 -
1622816740.0606706-CDS-M-pyrifera_M_contig8331:10617..107581622816740.0606706-CDS-M-pyrifera_M_contig8331:10617..10758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8331 10618..10758 -
1692278150.1694212-CDS-M-pyrifera_M_contig8331:10617..107581692278150.1694212-CDS-M-pyrifera_M_contig8331:10617..10758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8331 10618..10758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.0730352-UTR-M-pyrifera_M_contig8331:10758..107631622816740.0730352-UTR-M-pyrifera_M_contig8331:10758..10763Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8331 10759..10763 -
1692278150.1777875-UTR-M-pyrifera_M_contig8331:10758..107631692278150.1777875-UTR-M-pyrifera_M_contig8331:10758..10763Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8331 10759..10763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8331.19458.1

>prot_M-pyrifera_M_contig8331.19458.1 ID=prot_M-pyrifera_M_contig8331.19458.1|Name=mRNA_M-pyrifera_M_contig8331.19458.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MKEHVFNMKDPIIVGMEVIEGTLRVGTPLCIPAMGGMEIGRVTSIQQNHR
EVDKVSKGASAAVRVEDSNGGSTLTYGR
back to top

mRNA from alignment at M-pyrifera_M_contig8331:9694..10763-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8331.19458.1 ID=mRNA_M-pyrifera_M_contig8331.19458.1|Name=mRNA_M-pyrifera_M_contig8331.19458.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1070bp|location=Sequence derived from alignment at M-pyrifera_M_contig8331:9694..10763- (Macrocystis pyrifera P11B4 male)
AGATAATGAAAGAGCACGTGTTCAACATGAAGGACCCCATCATCGTCGGC
ATGGAGGTGATCGAGGGCACACTGAGGGTTGGCACACCGCTGTGCATCCC
TGCCATGGGTGGCATGGAAATCGGCAGGGTAACCTCCATCCAACAGGTCA
GCGCCCCCTGACACGCCCGCGCGGTAGCGCCTTTGTGGGCCGCGCATTCC
CCGTGTACTGTTACATGCCTCCTTTGCCATTGAAGGGGGACCTAAACAAC
ATGCACAGTATTCCCCGATGTTTGCACGCCATATTTTTTTTATTCTTATT
TCTACGGTAGATTCCCCTGTGTACTATAATCACAACCGACGATGGGTCCG
AGAACCGAACATGCCTCCATTCTTTGTGTGCAATCCACATTTGGCTCTGG
TTCCTATTACAGTAATAGATAGTGTGGTATCACGCGCCTGCAATTTGGTC
CATTCCTCGATACACGTATATATATGAAAAACCATGGTCTCTGTTGTGGG
AGTGTTCGCGCCAGAAGGCGACAGACATCATGATGACTATAGCAGGCGGA
GACAACAGCTATAGGGGAAGGCACGTGGTTTGGTATGATTCGACGTATTA
TTTAGGTGAGGAGCAAAGGACCTCTACTGATAGACTGTACACCTTGGCAG
CGGCAGCGGCCTTTTTTTTCTTCCTGCCGCCGTGGCGCTTTGCGGCGGTC
GGTCGTCTTGACCACCGCCTCACTCTCGCTCTTGATGCGACTCGCCAAAC
ACCTTACGGCGCTTCGCGCTTGGTGCAAGCAACGTCTGCCTGGTTGGTAA
AAGCCCGACGTGCTATGTCCCGGCATTGTAAGGATGGCAGGGTATATGGT
CATACGACTACGGCGATGCGTGAACCTGAGTACACCCCCTTCGCGGACGC
CACCAACTTGACTTCCTGCCGCCTTGTGTCCGTCCACTTTCGCGCGTGCG
CGTGTAACGTCCCTCTTGGCCAATCAGAATCACCGTGAAGTCGACAAGGT
GTCAAAGGGGGCATCGGCGGCGGTGCGAGTGGAGGACAGTAACGGCGGGT
CGACGTTGACGTATGGGCGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8331:9694..10763-

>mRNA_M-pyrifera_M_contig8331.19458.1 ID=mRNA_M-pyrifera_M_contig8331.19458.1|Name=mRNA_M-pyrifera_M_contig8331.19458.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig8331:9694..10763- (Macrocystis pyrifera P11B4 male)
ATGAAAGAGCACGTGTTCAACATGAAGGACCCCATCATCGTCGGCATGGA
GGTGATCGAGGGCACACTGAGGGTTGGCACACCGCTGTGCATCCCTGCCA
TGGGTGGCATGGAAATCGGCAGGGTAACCTCCATCCAACAGATGAAAGAG
CACGTGTTCAACATGAAGGACCCCATCATCGTCGGCATGGAGGTGATCGA
GGGCACACTGAGGGTTGGCACACCGCTGTGCATCCCTGCCATGGGTGGCA
TGGAAATCGGCAGGGTAACCTCCATCCAACAGAATCACCGTGAAGTCGAC
AAGGTGTCAAAGGGGGCATCGGCGGCGGTGCGAGTGGAGGACAGTAACGG
CGGGTCGACGTTGACGTATGGGCGGAATCACCGTGAAGTCGACAAGGTGT
CAAAGGGGGCATCGGCGGCGGTGCGAGTGGAGGACAGTAACGGCGGGTCG
ACGTTGACGTATGGGCGG
back to top