mRNA_M-pyrifera_M_contig8331.19457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8331.19457.1
Unique NamemRNA_M-pyrifera_M_contig8331.19457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8331.19457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8331contigM-pyrifera_M_contig8331:8000..8442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.0076706-CDS-M-pyrifera_M_contig8331:7999..83951622816740.0076706-CDS-M-pyrifera_M_contig8331:7999..8395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8331 8000..8395 +
1692278150.1326134-CDS-M-pyrifera_M_contig8331:7999..83951692278150.1326134-CDS-M-pyrifera_M_contig8331:7999..8395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8331 8000..8395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816740.018288-UTR-M-pyrifera_M_contig8331:8395..84421622816740.018288-UTR-M-pyrifera_M_contig8331:8395..8442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8331 8396..8442 +
1692278150.1437554-UTR-M-pyrifera_M_contig8331:8395..84421692278150.1437554-UTR-M-pyrifera_M_contig8331:8395..8442Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8331 8396..8442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8331.19457.1prot_M-pyrifera_M_contig8331.19457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8331 8000..8395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8331.19457.1

>prot_M-pyrifera_M_contig8331.19457.1 ID=prot_M-pyrifera_M_contig8331.19457.1|Name=mRNA_M-pyrifera_M_contig8331.19457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
RHHDVLCYDPVRSWLPSTSNVAISHSSAQGRNEECRSVSVITAISASQFH
HKRYAKDSDTRYGTQRRRSAITSNTTGPAFAAVNDTGSSPASVARLNRRN
CSEISPGVFVATFASIVSWPRWATNTHGIKN*
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mRNA from alignment at M-pyrifera_M_contig8331:8000..8442+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8331.19457.1 ID=mRNA_M-pyrifera_M_contig8331.19457.1|Name=mRNA_M-pyrifera_M_contig8331.19457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=443bp|location=Sequence derived from alignment at M-pyrifera_M_contig8331:8000..8442+ (Macrocystis pyrifera P11B4 male)
AGGCATCACGATGTCCTTTGCTACGATCCTGTACGATCCTGGCTTCCATC
GACAAGCAACGTTGCAATCAGTCATAGTTCTGCCCAGGGCAGGAACGAGG
AGTGTCGCTCCGTGAGCGTTATCACCGCGATCTCTGCGAGCCAGTTTCAC
CACAAAAGGTATGCGAAGGATTCTGACACACGGTATGGTACACAACGCCG
ACGCTCAGCCATCACGTCGAATACGACGGGCCCTGCCTTTGCAGCGGTTA
ATGATACCGGCAGTTCCCCCGCATCCGTTGCCAGGTTGAACAGAAGAAAT
TGCTCAGAAATTTCTCCTGGTGTGTTTGTCGCGACCTTCGCGAGCATCGT
CTCTTGGCCCCGTTGGGCGACAAATACACATGGGATAAAAAACTAAACAA
AAAACGACCCCCGTGGAGCTCGAACGAGGGACCCGCCCGCTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8331:8000..8442+

>mRNA_M-pyrifera_M_contig8331.19457.1 ID=mRNA_M-pyrifera_M_contig8331.19457.1|Name=mRNA_M-pyrifera_M_contig8331.19457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig8331:8000..8442+ (Macrocystis pyrifera P11B4 male)
AGGCATCACGATGTCCTTTGCTACGATCCTGTACGATCCTGGCTTCCATC
GACAAGCAACGTTGCAATCAGTCATAGTTCTGCCCAGGGCAGGAACGAGG
AGTGTCGCTCCGTGAGCGTTATCACCGCGATCTCTGCGAGCCAGTTTCAC
CACAAAAGGTATGCGAAGGATTCTGACACACGGTATGGTACACAACGCCG
ACGCTCAGCCATCACGTCGAATACGACGGGCCCTGCCTTTGCAGCGGTTA
ATGATACCGGCAGTTCCCCCGCATCCGTTGCCAGGTTGAACAGAAGAAAT
TGCTCAGAAATTTCTCCTGGTGTGTTTGTCGCGACCTTCGCGAGCATCGT
CTCTTGGCCCCGTTGGGCGACAAATACACATGGGATAAAAAACTAAAGGC
ATCACGATGTCCTTTGCTACGATCCTGTACGATCCTGGCTTCCATCGACA
AGCAACGTTGCAATCAGTCATAGTTCTGCCCAGGGCAGGAACGAGGAGTG
TCGCTCCGTGAGCGTTATCACCGCGATCTCTGCGAGCCAGTTTCACCACA
AAAGGTATGCGAAGGATTCTGACACACGGTATGGTACACAACGCCGACGC
TCAGCCATCACGTCGAATACGACGGGCCCTGCCTTTGCAGCGGTTAATGA
TACCGGCAGTTCCCCCGCATCCGTTGCCAGGTTGAACAGAAGAAATTGCT
CAGAAATTTCTCCTGGTGTGTTTGTCGCGACCTTCGCGAGCATCGTCTCT
TGGCCCCGTTGGGCGACAAATACACATGGGATAAAAAACTAA
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