mRNA_M-pyrifera_M_contig8329.19453.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8329.19453.1
Unique NamemRNA_M-pyrifera_M_contig8329.19453.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: D8LPT9_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 4.710e-17
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   19 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN
Sbjct:  107 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 141
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BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A6H5KPY4_9PHAE (Histone acetyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY4_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.740e-17
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   19 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN
Sbjct:  900 LRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 934
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BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: B8LBX0_THAPS (Histone acetyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBX0_THAPS)

HSP 1 Score: 75.9 bits (185), Expect = 1.430e-16
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            QQRLLLLRHA+KCP +  QC VTPHC  MKRLWKHIAECK+
Sbjct:    1 QQRLLLLRHAAKCPHQDNQCPVTPHCAGMKRLWKHIAECKD 41
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BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A835Z3F1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3F1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.360e-15
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECK 120
            QQRLLLLRHASKCPAE  +C VTPHC  MK+LW+HIA CK
Sbjct:    1 QQRLLLLRHASKCPAEANKCPVTPHCANMKKLWQHIALCK 40
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BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A6U3SN67_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3SN67_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.400e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            QQRLLLLRHA+KCP +  QC VTPHC  MKRLWKHIAECK+
Sbjct:   72 QQRLLLLRHAAKCPHQDNQCPVTPHCAGMKRLWKHIAECKD 112
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BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A7S2VVC1_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVC1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.460e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            QQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+
Sbjct:  199 QQRLLLLRHAAKCPHENGKCPVTPHCAGMKRLWKHIAECKD 239
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BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A7S4WAS7_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WAS7_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.940e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            QQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+
Sbjct:  269 QQRLLLLRHAAKCPHEDGRCPVTPHCAGMKRLWKHIAECKD 309
[Close]
BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A7S2UKV4_9STRA (Histone acetyltransferase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKV4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.070e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            QQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+
Sbjct:  395 QQRLLLLRHAAKCPHEDGRCPVTPHCAGMKRLWKHIAECKD 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A7S2R3Z8_9STRA (Histone acetyltransferase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3Z8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.130e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            QQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+
Sbjct:   56 QQRLLLLRHAAKCPHEDGRCPVTPHCAGMKRLWKHIAECKD 96
[Close]
BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Match: A0A7S2UIC4_9STRA (Histone acetyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIC4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.140e-14
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKN 123
            QQRLLLLRHA+KCP E  +C VTPHC  MKRLWKHIAECK+
Sbjct:  395 QQRLLLLRHAAKCPHEDGRCPVTPHCAGMKRLWKHIAECKD 435
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8329.19453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT9_ECTSI4.710e-17100.00Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KPY4_9PHAE4.740e-17100.00Histone acetyltransferase n=1 Tax=Ectocarpus sp. C... [more]
B8LBX0_THAPS1.430e-1678.05Histone acetyltransferase (Fragment) n=1 Tax=Thala... [more]
A0A835Z3F1_9STRA3.360e-1577.50Histone acetyltransferase (Fragment) n=1 Tax=Tribo... [more]
A0A6U3SN67_9STRA2.400e-1478.05Histone acetyltransferase (Fragment) n=1 Tax=Skele... [more]
A0A7S2VVC1_9STRA4.460e-1478.05Histone acetyltransferase (Fragment) n=1 Tax=Tripa... [more]
A0A7S4WAS7_9STRA5.940e-1478.05Histone acetyltransferase (Fragment) n=1 Tax=Dityl... [more]
A0A7S2UKV4_9STRA6.070e-1478.05Histone acetyltransferase (Fragment) n=1 Tax=Atthe... [more]
A0A7S2R3Z8_9STRA6.130e-1478.05Histone acetyltransferase n=1 Tax=Eucampia antarct... [more]
A0A7S2UIC4_9STRA6.140e-1478.05Histone acetyltransferase n=1 Tax=Attheya septentr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8329contigM-pyrifera_M_contig8329:1456..2426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog2880.D8LPT9
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.850181-CDS-M-pyrifera_M_contig8329:1455..15451622816739.850181-CDS-M-pyrifera_M_contig8329:1455..1545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8329 1456..1545 -
1692278150.0390055-CDS-M-pyrifera_M_contig8329:1455..15451692278150.0390055-CDS-M-pyrifera_M_contig8329:1455..1545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8329 1456..1545 -
1622816739.8620374-CDS-M-pyrifera_M_contig8329:2291..24261622816739.8620374-CDS-M-pyrifera_M_contig8329:2291..2426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8329 2292..2426 -
1692278150.049716-CDS-M-pyrifera_M_contig8329:2291..24261692278150.049716-CDS-M-pyrifera_M_contig8329:2291..2426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8329 2292..2426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8329.19453.1prot_M-pyrifera_M_contig8329.19453.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8329 1456..2426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8329.19453.1

>prot_M-pyrifera_M_contig8329.19453.1 ID=prot_M-pyrifera_M_contig8329.19453.1|Name=mRNA_M-pyrifera_M_contig8329.19453.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
QQRLLLLRHASKCPAEGEQCKVTPHCQAMKRLWKHIAECKNQQCHMSPHC
VSSRFVLSHYHRCKDLKCAVCAPVR
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mRNA from alignment at M-pyrifera_M_contig8329:1456..2426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8329.19453.1 ID=mRNA_M-pyrifera_M_contig8329.19453.1|Name=mRNA_M-pyrifera_M_contig8329.19453.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=971bp|location=Sequence derived from alignment at M-pyrifera_M_contig8329:1456..2426- (Macrocystis pyrifera P11B4 male)
CAGCAGCGACTCCTACTCCTGCGACACGCGAGCAAGTGCCCGGCTGAAGG
GGAGCAGTGCAAGGTCACCCCGCACTGCCAGGCGATGAAGCGGCTGTGGA
AGCACATTGCCGAGTGCAAAAACCAGCAGTGTCACGTGCGTTGGTTTGCT
TGCGGGTACCCCCCTCCCTCACCCCTTTCCCCTCCTCCCTCTATCTCGCC
TCCTTCCTTTCCATCCCCTTTCCGTTTTGTTCGTTTTTGAGCTTTTCTGT
TCTATTTGCTTGTTTTAGTGTTTGTGCTTTGTTGTCTGTATACTTGGTAG
CATGAGTCTTGATGCTTGCAAAAATCTATCCTGTTCTAATTCCAAGTATT
TTTTCCCATAATTTAGGGGGTGGGTGCGGTTAACCCGCATTGTCCCCTGC
TGCAAAGGGTGTTTGTGTGCGGTTCATAATCTAATAGTACCAAGGTGGCG
GGAAAATAGTCCCGTTTGGACTCTGATACGAACATCGAACATAGCTTAGC
TCATATTGCCGGCCAGTGCTTGTTGATTGTCGCTACATAACTGTAATGGG
TTGGAAGGATAAATGTGCTTCCACCAGGCATACGCTTTCAATTTCAGTCG
TACGTATTCACGATTAACAGTGTATCTGGCAGGTCTTTGGGACGTAGAGA
TGCGCTCCCTGTGAGGGAGTAGTTTTTTTTGCACCTGGTACTGCTGCACC
TTGTACCAGGTACAGATTATGCGCTCCTTCCGTCCCCGCCTTTCTTCCCT
CCCTCCCTCTCCCCGTCTCTCCTTCCCTCTAACCTCCCTTCCTCCGTCCC
TTCCTCCGTCCCTCCCCCCCTTCCTCCATTCCTCTCCCTGACGACTACAC
GACGCGCGCGCCGCCGCCGCCTCCGCTGTAGATGTCCCCCCACTGCGTAT
CGTCGCGATTCGTGCTGAGCCACTACCACCGCTGCAAGGACCTTAAGTGC
GCAGTATGTGCTCCCGTCCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8329:1456..2426-

>mRNA_M-pyrifera_M_contig8329.19453.1 ID=mRNA_M-pyrifera_M_contig8329.19453.1|Name=mRNA_M-pyrifera_M_contig8329.19453.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig8329:1456..2426- (Macrocystis pyrifera P11B4 male)
CAGCAGCGACTCCTACTCCTGCGACACGCGAGCAAGTGCCCGGCTGAAGG
GGAGCAGTGCAAGGTCACCCCGCACTGCCAGGCGATGAAGCGGCTGTGGA
AGCACATTGCCGAGTGCAAAAACCAGCAGTGTCACCAGCAGCGACTCCTA
CTCCTGCGACACGCGAGCAAGTGCCCGGCTGAAGGGGAGCAGTGCAAGGT
CACCCCGCACTGCCAGGCGATGAAGCGGCTGTGGAAGCACATTGCCGAGT
GCAAAAACCAGCAGTGTCACATGTCCCCCCACTGCGTATCGTCGCGATTC
GTGCTGAGCCACTACCACCGCTGCAAGGACCTTAAGTGCGCAGTATGTGC
TCCCGTCCGGATGTCCCCCCACTGCGTATCGTCGCGATTCGTGCTGAGCC
ACTACCACCGCTGCAAGGACCTTAAGTGCGCAGTATGTGCTCCCGTCCGG
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