mRNA_M-pyrifera_M_contig83246.19442.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83246.19442.1
Unique NamemRNA_M-pyrifera_M_contig83246.19442.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83246.19442.1 vs. uniprot
Match: A0A835Z026_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z026_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.510e-11
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:   25 FGRLLRPVTFIEDVYGGLVSEEERKSARLPSNLVGLLEDGRFLQESGKLVRGVRERAASVLEGVKERGRREGDRMDEETEKALAPMLLREAFARELCAQVRHTAAQ 342
            F +LL+   F   V+ GL SEE+RK A  P     LL+D  +        R  + RAASVLEGVK+RGR  G+ MD  T+ AL P +L+EAFARE+ A VR   A+
Sbjct:  249 FAQLLQKDAFQRIVFPGL-SEEQRKWA--PQTFRALLQDPAYSGGLKDAARKAQARAASVLEGVKKRGREGGEDMDAATDAALRPQILQEAFAREVVAMVREVHAR 351
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BLAST of mRNA_M-pyrifera_M_contig83246.19442.1 vs. uniprot
Match: D7G815_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G815_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.600e-9
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:   25 FGRLLRPVTFIEDVYGGLVSEEERKSARLPSNLVGLLEDGRFLQESGKLVRGVRERAASVLEGVKERGRREGDRMDEETEKALAPMLLREAFAREL 312
            F +L+ P  F       L  +E R++   PS+   LL    +     K +  V   AASVLEGVK RGR +GD MD  TE+AL P +L+EAFARE+
Sbjct:  226 FSKLIEPEQFRRIALSRLPEDERRQA---PSSFQELLRTPLYASALEKALPRVVSTAASVLEGVKRRGREQGDIMDSATEEALKPQVLQEAFAREV 318
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BLAST of mRNA_M-pyrifera_M_contig83246.19442.1 vs. uniprot
Match: A0A2R5GB12_9STRA (Small glutamine-rich tetratricopeptide repeat-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GB12_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.390e-5
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:   25 FGRLLRPVTFIEDVYGGLVSEEERKSARLPSNLVGLLEDGRFLQESGKLVRGVRERAASVLEGVKERGRREGDRMDEETEKALAPMLLREAFA 303
            F R+  P  F + VY       E  +AR+P +   L+ +  + +    L   ++ +A SVL+ VK +G ++G  MDE TE+ L P +L EAFA
Sbjct:  195 FSRMQTPTQFRQIVYRNAQLPPEA-AARMPKSFQELVSNELYFKALVDLFPSIQAKADSVLQNVKAKGAKDGQFMDEATERMLRPQVLNEAFA 286
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83246.19442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z026_9STRA1.510e-1146.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G815_ECTSI5.600e-942.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GB12_9STRA8.390e-534.41Small glutamine-rich tetratricopeptide repeat-cont... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83246contigM-pyrifera_M_contig83246:345..686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue3.8e-09
Seed eggNOG ortholog4792.ETI44539
KEGG koko:K09553
KEGG Pathwayko05020,map05020
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs3QD28@4776,COG0457@1,KOG0548@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size342
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816739.2923708-CDS-M-pyrifera_M_contig83246:344..6861622816739.2923708-CDS-M-pyrifera_M_contig83246:344..686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83246 345..686 -
1692278149.7343318-CDS-M-pyrifera_M_contig83246:344..6861692278149.7343318-CDS-M-pyrifera_M_contig83246:344..686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83246 345..686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83246.19442.1prot_M-pyrifera_M_contig83246.19442.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83246 345..686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83246.19442.1

>prot_M-pyrifera_M_contig83246.19442.1 ID=prot_M-pyrifera_M_contig83246.19442.1|Name=mRNA_M-pyrifera_M_contig83246.19442.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
APVNPGSGFGRLLRPVTFIEDVYGGLVSEEERKSARLPSNLVGLLEDGRF
LQESGKLVRGVRERAASVLEGVKERGRREGDRMDEETEKALAPMLLREAF
ARELCAQVRHTAAQ
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mRNA from alignment at M-pyrifera_M_contig83246:345..686-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83246.19442.1 ID=mRNA_M-pyrifera_M_contig83246.19442.1|Name=mRNA_M-pyrifera_M_contig83246.19442.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig83246:345..686- (Macrocystis pyrifera P11B4 male)
GCTCCTGTGAATCCTGGGTCAGGTTTTGGGCGCCTTTTGCGACCTGTTAC
ATTTATAGAAGATGTGTATGGTGGGTTGGTGTCGGAAGAGGAACGAAAGA
GTGCTCGATTACCTTCAAATTTGGTGGGATTGTTGGAGGATGGACGTTTC
TTGCAGGAATCTGGAAAGTTGGTGCGAGGTGTCCGTGAAAGGGCAGCATC
TGTGCTCGAAGGAGTGAAGGAGCGAGGAAGGAGAGAGGGAGATCGCATGG
ATGAAGAGACAGAGAAAGCTTTAGCACCAATGTTGTTGCGAGAGGCATTT
GCGAGGGAATTGTGTGCACAAGTACGTCACACAGCAGCACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83246:345..686-

>mRNA_M-pyrifera_M_contig83246.19442.1 ID=mRNA_M-pyrifera_M_contig83246.19442.1|Name=mRNA_M-pyrifera_M_contig83246.19442.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig83246:345..686- (Macrocystis pyrifera P11B4 male)
GCTCCTGTGAATCCTGGGTCAGGTTTTGGGCGCCTTTTGCGACCTGTTAC
ATTTATAGAAGATGTGTATGGTGGGTTGGTGTCGGAAGAGGAACGAAAGA
GTGCTCGATTACCTTCAAATTTGGTGGGATTGTTGGAGGATGGACGTTTC
TTGCAGGAATCTGGAAAGTTGGTGCGAGGTGTCCGTGAAAGGGCAGCATC
TGTGCTCGAAGGAGTGAAGGAGCGAGGAAGGAGAGAGGGAGATCGCATGG
ATGAAGAGACAGAGAAAGCTTTAGCACCAATGTTGTTGCGAGAGGCATTT
GCGAGGGAATTGTGTGCACAAGTACGTCACACAGCAGCACAAGCTCCTGT
GAATCCTGGGTCAGGTTTTGGGCGCCTTTTGCGACCTGTTACATTTATAG
AAGATGTGTATGGTGGGTTGGTGTCGGAAGAGGAACGAAAGAGTGCTCGA
TTACCTTCAAATTTGGTGGGATTGTTGGAGGATGGACGTTTCTTGCAGGA
ATCTGGAAAGTTGGTGCGAGGTGTCCGTGAAAGGGCAGCATCTGTGCTCG
AAGGAGTGAAGGAGCGAGGAAGGAGAGAGGGAGATCGCATGGATGAAGAG
ACAGAGAAAGCTTTAGCACCAATGTTGTTGCGAGAGGCATTTGCGAGGGA
ATTGTGTGCACAAGTACGTCACACAGCAGCACAA
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