mRNA_M-pyrifera_M_contig83193.19433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83193.19433.1
Unique NamemRNA_M-pyrifera_M_contig83193.19433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83193.19433.1 vs. uniprot
Match: UPI001E1D545D (polycomb protein EED-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D545D)

HSP 1 Score: 58.2 bits (139), Expect = 3.820e-8
Identity = 32/63 (50.79%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    4 GAIFLWDVTALGAKPSPTPAKPIVELTTPKCTSPIRLVAFSKDGDTLCAVSDDSTLWRWDLAK 192
            G IF+WD+        P  AK  V LT  KC S +R   FS DGDTL AV DD T+WRWD  K
Sbjct:  372 GRIFVWDIDV----EDPVLAKCSV-LTHNKCYSAVRQTCFSADGDTLLAVCDDGTIWRWDKVK 429
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BLAST of mRNA_M-pyrifera_M_contig83193.19433.1 vs. uniprot
Match: A0A6F9DC65_9ASCI (Polycomb protein eed-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DC65_9ASCI)

HSP 1 Score: 57.0 bits (136), Expect = 9.770e-8
Identity = 30/64 (46.88%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:    4 GAIFLWDVTALGAKPSPTPAKPIVELTTPKCTSPIRLVAFSKDGDTLCAVSDDSTLWRWDLAKK 195
            G  F+W++  L     P  +K    LT  +CT+ IR  AFSKDGD L  V DDST+WRWD   K
Sbjct:  368 GKTFVWELDQL----DPVKSK-CFTLTNIRCTTTIRQTAFSKDGDILICVCDDSTIWRWDRQTK 426
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BLAST of mRNA_M-pyrifera_M_contig83193.19433.1 vs. uniprot
Match: A0A210QDN5_MIZYE (Polycomb protein EED n=3 Tax=Pectinidae TaxID=6566 RepID=A0A210QDN5_MIZYE)

HSP 1 Score: 53.9 bits (128), Expect = 1.200e-6
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    4 GAIFLWDVTALGAKPSPTPAKPIVELTTPKCTSPIRLVAFSKDGDTLCAVSDDSTLWRWDLAK 192
            G I++WD+        PT A+  V L+  KC + IR  AF+ DG TL AV+DD ++WRWD  K
Sbjct:  377 GRIYVWDIDT----EDPTAARCTV-LSHNKCITAIRQTAFTLDGSTLLAVTDDGSIWRWDRVK 434
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BLAST of mRNA_M-pyrifera_M_contig83193.19433.1 vs. uniprot
Match: A0A7S0CKT2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKT2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.180e-6
Identity = 25/60 (41.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    4 GAIFLWDVTALGAKPSPTPAKPIVELTTPKCTSPIRLVAFSKDGDTLCAVSDDSTLWRWD 183
            G I +W + +   K      +    LT   CTS IR+V+FS DG++L AV DD+T+W+WD
Sbjct:  380 GEIKIWKICSSPQK------RHFANLTHQHCTSTIRMVSFSPDGNSLVAVCDDATIWKWD 433
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BLAST of mRNA_M-pyrifera_M_contig83193.19433.1 vs. uniprot
Match: A0A7S2XU11_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU11_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.780e-5
Identity = 22/60 (36.67%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    4 GAIFLWDVTALGAKPSPTPAKPIVELTTPKCTSPIRLVAFSKDGDTLCAVSDDSTLWRWD 183
            G I +W++      P     K    L+   C+S +R+VAFS DG+++ +  DDST+W+WD
Sbjct:  509 GDIKVWEIGGSSFNPQ---KKSFANLSNQLCSSTVRMVAFSPDGNSIISCCDDSTVWKWD 565
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83193.19433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001E1D545D3.820e-850.79polycomb protein EED-like n=1 Tax=Mercenaria merce... [more]
A0A6F9DC65_9ASCI9.770e-846.88Polycomb protein eed-like n=1 Tax=Phallusia mammil... [more]
A0A210QDN5_MIZYE1.200e-644.44Polycomb protein EED n=3 Tax=Pectinidae TaxID=6566... [more]
A0A7S0CKT2_9STRA4.180e-641.67Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2XU11_9STRA2.780e-536.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83193contigM-pyrifera_M_contig83193:678..899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.8850725-CDS-M-pyrifera_M_contig83193:677..8991622816738.8850725-CDS-M-pyrifera_M_contig83193:677..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83193 678..899 -
1692278149.5427258-CDS-M-pyrifera_M_contig83193:677..8991692278149.5427258-CDS-M-pyrifera_M_contig83193:677..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83193 678..899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83193.19433.1prot_M-pyrifera_M_contig83193.19433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83193 678..899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83193.19433.1

>prot_M-pyrifera_M_contig83193.19433.1 ID=prot_M-pyrifera_M_contig83193.19433.1|Name=mRNA_M-pyrifera_M_contig83193.19433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
SGAIFLWDVTALGAKPSPTPAKPIVELTTPKCTSPIRLVAFSKDGDTLCA
VSDDSTLWRWDLAKKSTRRRRRW*
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mRNA from alignment at M-pyrifera_M_contig83193:678..899-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83193.19433.1 ID=mRNA_M-pyrifera_M_contig83193.19433.1|Name=mRNA_M-pyrifera_M_contig83193.19433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig83193:678..899- (Macrocystis pyrifera P11B4 male)
TCTGGGGCCATCTTCCTCTGGGACGTCACTGCCCTGGGCGCGAAACCCTC
CCCCACCCCAGCCAAACCCATCGTAGAACTCACCACCCCGAAATGCACCT
CCCCAATCCGACTCGTAGCCTTCTCAAAGGACGGAGATACACTTTGTGCC
GTATCAGACGACTCCACACTGTGGAGGTGGGACCTGGCCAAGAAATCCAC
ACGGAGAAGAAGGAGATGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83193:678..899-

>mRNA_M-pyrifera_M_contig83193.19433.1 ID=mRNA_M-pyrifera_M_contig83193.19433.1|Name=mRNA_M-pyrifera_M_contig83193.19433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig83193:678..899- (Macrocystis pyrifera P11B4 male)
TCTGGGGCCATCTTCCTCTGGGACGTCACTGCCCTGGGCGCGAAACCCTC
CCCCACCCCAGCCAAACCCATCGTAGAACTCACCACCCCGAAATGCACCT
CCCCAATCCGACTCGTAGCCTTCTCAAAGGACGGAGATACACTTTGTGCC
GTATCAGACGACTCCACACTGTGGAGGTGGGACCTGGCCAAGAAATCCAC
ACGGAGAAGAAGGAGATGGTGATCTGGGGCCATCTTCCTCTGGGACGTCA
CTGCCCTGGGCGCGAAACCCTCCCCCACCCCAGCCAAACCCATCGTAGAA
CTCACCACCCCGAAATGCACCTCCCCAATCCGACTCGTAGCCTTCTCAAA
GGACGGAGATACACTTTGTGCCGTATCAGACGACTCCACACTGTGGAGGT
GGGACCTGGCCAAGAAATCCACACGGAGAAGAAGGAGATGGTGA
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