mRNA_M-pyrifera_M_contig83129.19418.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83129.19418.1
Unique NamemRNA_M-pyrifera_M_contig83129.19418.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: UPI000A2A6999 (sphingomyelin synthase-related protein 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6999)

HSP 1 Score: 97.8 bits (242), Expect = 3.340e-22
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   10 WVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAAETDT-----KNSRGLFPMFNYFEEYSGGQKLPNKYEAP--WRPFMRLAKD 258
            WV N+FGIFF+LA HEHYS+DV++A+Y++SR+FLYYH  A + T     K ++  FP+F++FEE+  G ++PN+YE P  W  F+ + K+
Sbjct:  308 WVLNLFGIFFILAAHEHYSIDVLIAFYISSRLFLYYHTLANSRTLKHEDKRTKAWFPLFSFFEEHVEG-RVPNEYEWPLQWPNFLLIPKN 396
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: A0A3M6U4H1_POCDA (SAM domain-containing protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6U4H1_POCDA)

HSP 1 Score: 97.8 bits (242), Expect = 3.510e-22
Identity = 46/81 (56.79%), Postives = 60/81 (74.07%), Query Frame = 1 
Query:   10 WVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAAET------DTKNSRGLFPMFNYFEEYSGGQKLPNKYEAPWR 234
            WV NMFGIFF+LA HEHYS+DV++A+Y++SR+FLYYH  A T      D+K +R  FP+F +FEE   G K+PN+YE P R
Sbjct:  319 WVLNMFGIFFILAAHEHYSIDVVIAFYISSRLFLYYHTLANTRALKQIDSKRTRIWFPLFWFFEEKVSG-KVPNEYEWPLR 398
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: UPI0009E2DA88 (sphingomyelin synthase-related protein 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2DA88)

HSP 1 Score: 97.1 bits (240), Expect = 7.680e-22
Identity = 46/86 (53.49%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:   10 WVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAAET------DTKNSRGLFPMFNYFEEYSGGQKLPNKYEAP--WRPFM 243
            WV N+FGIFF+LA HEHYS+DV++A+Y++SR+FLYYH  A T      D+K +R  FP+F +FEE   G K+PN+YE P  W  F+
Sbjct:  325 WVLNIFGIFFILAAHEHYSIDVVIAFYISSRLFLYYHTLANTRALKQIDSKRTRVWFPLFWFFEEKVSG-KVPNEYEWPLKWPSFL 409
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: A0A1B6CYT4_9HEMI (PAP2_C domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CYT4_9HEMI)

HSP 1 Score: 91.3 bits (225), Expect = 1.480e-21
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1 
Query:    7 SWVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAA------ETDTKNSRGLFPMFNYFEEYSGGQKLPNKYEAP 228
            +W+ NMFGIFF+L+GHEHYS+DV +A+Y+ SR+FLYYH  A      + DT  +R  FP+F++FE Y     +PN+YE+P
Sbjct:   22 TWLLNMFGIFFILSGHEHYSIDVFIAFYITSRLFLYYHTLANNQSLMQRDTGRTRIWFPLFSFFE-YDVDGIVPNEYESP 100
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: UPI00077ACA8D (sphingomyelin synthase-related protein 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077ACA8D)

HSP 1 Score: 95.5 bits (236), Expect = 2.420e-21
Identity = 47/89 (52.81%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:   10 WVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAAET------DTKNSRGLFPMFNYFEEYSGGQKLPNKYEAPW-RPFMRLAK 255
            WV NMFGIFF+LA HEHYS+DV++A+Y+ SR+FLYYH  A T      +++ SR  FP+F +FEE   G K+PN+YE P  RP    +K
Sbjct:  316 WVLNMFGIFFILAAHEHYSIDVVIAFYITSRLFLYYHTLANTLALKRIESRRSRVWFPLFWFFEEKVSG-KVPNEYEWPLKRPAFLCSK 403
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: A0A0S7INS1_9TELE (SAMD8 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7INS1_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 2.690e-21
Identity = 43/88 (48.86%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    4 VSWVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAAET----DTKNSRGLFPMFNYFEEYSGGQKLPNKYEAPW-RP-FMRL 249
            +SWV N+FGIFF+LA HEHYS+DV +A+Y+ +R+FLYYH  A T     ++ +R  FPMF++FE    G  +PN+Y  P+ +P FM++
Sbjct:   20 ISWVLNLFGIFFILAAHEHYSIDVFIAFYITTRLFLYYHTLANTRAFQHSRRARIWFPMFSFFECNVNGP-VPNQYHWPFSKPAFMKI 106
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: T1ED07_HELRO (SAM domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ED07_HELRO)

HSP 1 Score: 95.1 bits (235), Expect = 5.210e-21
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:    4 VSWVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAAETDT-----KNSRGLFPMFNYFEEYSGGQKLPNKYEAPWRPFMRL 249
            + WVFN F IFF+LAGHEHYS+DV +A+Y+ SR+FLYYH  A           +R  FP+F +FE +S    +PN+YE PW  F R 
Sbjct:  359 LGWVFNFFAIFFILAGHEHYSIDVFIAFYITSRLFLYYHSLANNRVLIQRDARTRIWFPLFTFFE-FSMDGVVPNEYELPWMTFFRF 444
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: A0A6P4IYI4_DROKI (sphingomyelin synthase-related 1 n=1 Tax=Drosophila kikkawai TaxID=30033 RepID=A0A6P4IYI4_DROKI)

HSP 1 Score: 95.1 bits (235), Expect = 6.170e-21
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 VSWVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAA------ETDTKNSRGLFPMFNYFEEYSGGQKLPNKYEAP 228
            ++W+ NMFGIFF+LA HEHYS+DV VA+Y+ SR+FLYYH  A      ++D+K +R  FPMF+YFE    G  +PN+Y+ P
Sbjct:  389 LTWLLNMFGIFFILAAHEHYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRIWFPMFSYFESSVDGM-VPNEYDTP 468
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BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: UPI000A1D2C56 (LOW QUALITY PROTEIN: sphingomyelin synthase-related 1 n=1 Tax=Drosophila serrata TaxID=7274 RepID=UPI000A1D2C56)

HSP 1 Score: 95.1 bits (235), Expect = 6.170e-21
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 VSWVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAA------ETDTKNSRGLFPMFNYFEEYSGGQKLPNKYEAP 228
            ++W+ NMFGIFF+LA HEHYS+DV VA+Y+ SR+FLYYH  A      ++D+K +R  FPMF+YFE    G  +PN+Y+ P
Sbjct:  389 LTWLLNMFGIFFILAAHEHYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRIWFPMFSYFESSVDGM-VPNEYDTP 468
[Close]
BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Match: A0A1L4A1S7_LOCMI (Sphingomyelin synthase-related 1 n=3 Tax=Acrididae TaxID=7002 RepID=A0A1L4A1S7_LOCMI)

HSP 1 Score: 94.4 bits (233), Expect = 8.580e-21
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    7 SWVFNMFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAA------ETDTKNSRGLFPMFNYFEEYSGGQKLPNKYEAPWRPFMRLA 252
            +WV NMFGIFF+LA HEHYS+DV VA+Y+ SR+FLYYH  A      + D+  +R  FP+F++FE    G  +PN+YE+P+    +LA
Sbjct:  334 TWVLNMFGIFFILAAHEHYSIDVFVAFYITSRLFLYYHTLANNQALMQRDSNRTRIWFPLFSFFESSVNGI-VPNEYESPFVALRKLA 420
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83129.19418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A69993.340e-2248.89sphingomyelin synthase-related protein 1 n=1 Tax=E... [more]
A0A3M6U4H1_POCDA3.510e-2256.79SAM domain-containing protein n=3 Tax=Pocilloporid... [more]
UPI0009E2DA887.680e-2253.49sphingomyelin synthase-related protein 1-like n=1 ... [more]
A0A1B6CYT4_9HEMI1.480e-2151.25PAP2_C domain-containing protein (Fragment) n=1 Ta... [more]
UPI00077ACA8D2.420e-2152.81sphingomyelin synthase-related protein 1-like n=2 ... [more]
A0A0S7INS1_9TELE2.690e-2148.86SAMD8 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
T1ED07_HELRO5.210e-2149.43SAM domain-containing protein n=1 Tax=Helobdella r... [more]
A0A6P4IYI4_DROKI6.170e-2153.09sphingomyelin synthase-related 1 n=1 Tax=Drosophil... [more]
UPI000A1D2C566.170e-2153.09LOW QUALITY PROTEIN: sphingomyelin synthase-relate... [more]
A0A1L4A1S7_LOCMI8.580e-2150.00Sphingomyelin synthase-related 1 n=3 Tax=Acrididae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83129contigM-pyrifera_M_contig83129:6..313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score83.2
Seed ortholog evalue6e-14
Seed eggNOG ortholog7245.FBpp0265426
Preferred nameSMSr
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0005887,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007030,GO:0008150,GO:0008152,GO:0008361,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009987,GO:0010256,GO:0010556,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016740,GO:0016772,GO:0016780,GO:0019216,GO:0019222,GO:0019637,GO:0030148,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031226,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031323,GO:0031326,GO:0031984,GO:0032535,GO:0033188,GO:0034248,GO:0034641,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046467,GO:0046513,GO:0046890,GO:0047493,GO:0050789,GO:0050794,GO:0051171,GO:0060255,GO:0060305,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090153,GO:0090407,GO:0097164,GO:0098588,GO:0098791,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1905038,GO:2000303
EggNOG free text desc.PAP2 superfamily C-terminal
EggNOG OGs38GXT@33154,3BC23@33208,3CVX4@33213,3SFYP@50557,41WJR@6656,44XWQ@7147,45S88@7214,KOG3058@1,KOG3058@2759
Ec32 ortholog descriptionSphingomyelin synthase-like domain
Ec32 orthologEc-11_002000.1
COG Functional cat.S
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
Exons2
Model size258
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83129.19418.1prot_M-pyrifera_M_contig83129.19418.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83129 27..313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.2192163-UTR-M-pyrifera_M_contig83129:5..261622816738.2192163-UTR-M-pyrifera_M_contig83129:5..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83129 6..26 +
1692278149.179848-UTR-M-pyrifera_M_contig83129:5..261692278149.179848-UTR-M-pyrifera_M_contig83129:5..26Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig83129 6..26 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.232099-CDS-M-pyrifera_M_contig83129:26..871622816738.232099-CDS-M-pyrifera_M_contig83129:26..87Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83129 27..87 +
1692278149.1909983-CDS-M-pyrifera_M_contig83129:26..871692278149.1909983-CDS-M-pyrifera_M_contig83129:26..87Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83129 27..87 +
1622816738.24402-CDS-M-pyrifera_M_contig83129:137..3131622816738.24402-CDS-M-pyrifera_M_contig83129:137..313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83129 138..313 +
1692278149.2000008-CDS-M-pyrifera_M_contig83129:137..3131692278149.2000008-CDS-M-pyrifera_M_contig83129:137..313Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83129 138..313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83129.19418.1

>prot_M-pyrifera_M_contig83129.19418.1 ID=prot_M-pyrifera_M_contig83129.19418.1|Name=mRNA_M-pyrifera_M_contig83129.19418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MFGIFFVLAGHEHYSLDVIVAYYVASRMFLYYHDAAETDTKNSRGLFPMF
NYFEEYSGGQKLPNKYEAPWRPFMRLAKD
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mRNA from alignment at M-pyrifera_M_contig83129:6..313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83129.19418.1 ID=mRNA_M-pyrifera_M_contig83129.19418.1|Name=mRNA_M-pyrifera_M_contig83129.19418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=308bp|location=Sequence derived from alignment at M-pyrifera_M_contig83129:6..313+ (Macrocystis pyrifera P11B4 male)
ATCGTTAGCTGGGTATTTAACATGTTCGGCATTTTCTTCGTCCTGGCAGG
CCACGAACACTATTCCCTGGACGTCATTGTTGGTATGTACTATGCGCTGG
CCCGACAGATACATCTTCTGACTTGGATGCAGCGTATTACGTTGCCTCGA
GGATGTTCCTTTACTACCACGACGCCGCTGAGACGGACACAAAGAATTCC
CGTGGCCTCTTCCCTATGTTCAACTACTTTGAGGAGTACTCTGGAGGGCA
GAAGCTGCCCAACAAGTATGAGGCCCCCTGGCGCCCGTTCATGCGTCTTG
CCAAGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83129:6..313+

>mRNA_M-pyrifera_M_contig83129.19418.1 ID=mRNA_M-pyrifera_M_contig83129.19418.1|Name=mRNA_M-pyrifera_M_contig83129.19418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig83129:6..313+ (Macrocystis pyrifera P11B4 male)
ATGTTCGGCATTTTCTTCGTCCTGGCAGGCCACGAACACTATTCCCTGGA
CGTCATTGTTGATGTTCGGCATTTTCTTCGTCCTGGCAGGCCACGAACAC
TATTCCCTGGACGTCATTGTTGCGTATTACGTTGCCTCGAGGATGTTCCT
TTACTACCACGACGCCGCTGAGACGGACACAAAGAATTCCCGTGGCCTCT
TCCCTATGTTCAACTACTTTGAGGAGTACTCTGGAGGGCAGAAGCTGCCC
AACAAGTATGAGGCCCCCTGGCGCCCGTTCATGCGTCTTGCCAAGGACCG
TATTACGTTGCCTCGAGGATGTTCCTTTACTACCACGACGCCGCTGAGAC
GGACACAAAGAATTCCCGTGGCCTCTTCCCTATGTTCAACTACTTTGAGG
AGTACTCTGGAGGGCAGAAGCTGCCCAACAAGTATGAGGCCCCCTGGCGC
CCGTTCATGCGTCTTGCCAAGGAC
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