mRNA_M-pyrifera_M_contig83126.19415.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83126.19415.1
Unique NamemRNA_M-pyrifera_M_contig83126.19415.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83126.19415.1 vs. uniprot
Match: A0A556V2P1_BAGYA (Cyclic nucleotide-gated cation channel beta-1 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556V2P1_BAGYA)

HSP 1 Score: 61.2 bits (147), Expect = 6.950e-7
Identity = 69/235 (29.36%), Postives = 110/235 (46.81%), Query Frame = 1 
Query:  106 TLTSLSLAYCTHTDAVIATAVQHTPL-LESLIVSNCKKLTDFGIQHAVKLLAMGRLQRLEFDNCFRVTDDAMDALAASDEVANLRHLSIAH-----NVGLHEPAIRGLLSRLPRALFLNVSKC-NVTGDTL--NALPPRESAEAGDDSVALEELVASQCAGVTSVEDL-MVRAKDLSRVDLRK-TGLTDASVKAMSDHCRGLRQVNISDCGSISDDGAITLATLPLEDLNVSSCP 777
            TL SL L+  + T   + + V+   L LE L +S+CKKLTD+ I+H  +      L  L+          +M A+AA+  +  L+ LS++      N GL E      L+ LP    L++S+C N++   L      P+  A+       LE+L    C  +  +  +  + A  L  +DL    GLTD S+ A+S H  GL+ + +  C  I+D G + +   P+ D   S  P
Sbjct: 1397 TLRSLDLSRTSITPESLLSLVRIPGLHLEELSLSDCKKLTDYSIEHLCR--HQRNLHMLDLGGXXXXXXRSMLAVAAT--LKQLQSLSLSRVWRITNKGLAE------LTALPGLRSLDLSECVNISSAELVKGLSSPQHRAQ-------LEKLRLRSCTYIRDICSIAQLLASSLKELDLTSCNGLTDPSIHAVSSHLSGLQVLRLGSCKQITDWGLLGMEE-PVGDKKPSKQP 1613
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83126.19415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A556V2P1_BAGYA6.950e-729.36Cyclic nucleotide-gated cation channel beta-1 n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83126contigM-pyrifera_M_contig83126:6..899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.9
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog4006.Lus10002165
KEGG koko:K14515
KEGG Pathwayko04016,ko04075,map04016,map04075
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EIN3-binding F-box protein
EggNOG OGs37KZ0@33090,3GE8Z@35493,4JGC1@91835,KOG1947@1,KOG1947@2759
COG Functional cat.Q
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons2
Model size819
Cds size819
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816738.1019566-CDS-M-pyrifera_M_contig83126:5..6851622816738.1019566-CDS-M-pyrifera_M_contig83126:5..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83126 6..685 -
1692278149.1233985-CDS-M-pyrifera_M_contig83126:5..6851692278149.1233985-CDS-M-pyrifera_M_contig83126:5..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83126 6..685 -
1622816738.1161857-CDS-M-pyrifera_M_contig83126:760..8991622816738.1161857-CDS-M-pyrifera_M_contig83126:760..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83126 761..899 -
1692278149.1342807-CDS-M-pyrifera_M_contig83126:760..8991692278149.1342807-CDS-M-pyrifera_M_contig83126:760..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83126 761..899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83126.19415.1prot_M-pyrifera_M_contig83126.19415.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83126 6..899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83126.19415.1

>prot_M-pyrifera_M_contig83126.19415.1 ID=prot_M-pyrifera_M_contig83126.19415.1|Name=mRNA_M-pyrifera_M_contig83126.19415.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=273bp
DGLQKLVQNCTALEELVLSSCRVTNDHVAVLSGCTTLTSLSLAYCTHTDA
VIATAVQHTPLLESLIVSNCKKLTDFGIQHAVKLLAMGRLQRLEFDNCFR
VTDDAMDALAASDEVANLRHLSIAHNVGLHEPAIRGLLSRLPRALFLNVS
KCNVTGDTLNALPPRESAEAGDDSVALEELVASQCAGVTSVEDLMVRAKD
LSRVDLRKTGLTDASVKAMSDHCRGLRQVNISDCGSISDDGAITLATLPL
EDLNVSSCPHITDELIQYLVQYC
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mRNA from alignment at M-pyrifera_M_contig83126:6..899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83126.19415.1 ID=mRNA_M-pyrifera_M_contig83126.19415.1|Name=mRNA_M-pyrifera_M_contig83126.19415.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig83126:6..899- (Macrocystis pyrifera P11B4 male)
GATGGCCTCCAGAAGCTCGTGCAGAACTGCACTGCATTGGAGGAGCTGGT
GCTCAGCTCTTGTAGGGTCACCAACGACCATGTGGCTGTGCTGTCTGGCT
GCACCACCCTCACCTCACTGAGCCTTGCCTACTGCACCCGTGCGGAGGTG
CTGACTCCCTGGCTGGAGAGGTTGCCTAGGCTGAGGTTTTTGGACGCATC
CAATGCTTACAGAGACACCGATGCTGTGATTGCCACTGCTGTCCAGCACA
CTCCTCTCCTGGAGAGCCTCATTGTGAGCAACTGCAAGAAGCTCACCGAC
TTCGGCATCCAGCACGCCGTCAAGCTCTTGGCAATGGGAAGACTGCAGAG
GCTCGAGTTTGACAACTGTTTCAGAGTGACTGACGACGCTATGGATGCTC
TCGCGGCCTCTGATGAAGTTGCCAACCTCAGGCACCTCTCAATTGCTCAC
AACGTGGGCCTCCACGAACCTGCGATCAGAGGGCTCCTCTCGAGGCTGCC
GAGGGCACTGTTTTTGAATGTGAGCAAATGCAACGTCACTGGCGACACTC
TCAATGCCCTCCCTCCACGAGAGAGTGCGGAGGCAGGAGACGACAGTGTT
GCGCTGGAGGAATTGGTCGCCTCGCAATGTGCTGGCGTCACCTCAGTTGA
GGATCTCATGGTGAGGGCAAAGGACCTCTCCAGAGTGGACCTGAGGAAGA
CTGGCCTCACCGACGCTTCCGTCAAGGCAATGAGTGACCATTGCAGAGGT
CTTCGCCAGGTGAACATCAGCGACTGTGGCTCCATCAGCGACGACGGAGC
AATTACGCTGGCGACCCTTCCTCTGGAGGACTTGAACGTCTCCTCCTGCC
CCCACATCACAGACGAGCTCATCCAGTATCTGGTGCAGTACTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83126:6..899-

>mRNA_M-pyrifera_M_contig83126.19415.1 ID=mRNA_M-pyrifera_M_contig83126.19415.1|Name=mRNA_M-pyrifera_M_contig83126.19415.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1638bp|location=Sequence derived from alignment at M-pyrifera_M_contig83126:6..899- (Macrocystis pyrifera P11B4 male)
GATGGCCTCCAGAAGCTCGTGCAGAACTGCACTGCATTGGAGGAGCTGGT
GCTCAGCTCTTGTAGGGTCACCAACGACCATGTGGCTGTGCTGTCTGGCT
GCACCACCCTCACCTCACTGAGCCTTGCCTACTGCACCCGATGGCCTCCA
GAAGCTCGTGCAGAACTGCACTGCATTGGAGGAGCTGGTGCTCAGCTCTT
GTAGGGTCACCAACGACCATGTGGCTGTGCTGTCTGGCTGCACCACCCTC
ACCTCACTGAGCCTTGCCTACTGCACCCACACCGATGCTGTGATTGCCAC
TGCTGTCCAGCACACTCCTCTCCTGGAGAGCCTCATTGTGAGCAACTGCA
AGAAGCTCACCGACTTCGGCATCCAGCACGCCGTCAAGCTCTTGGCAATG
GGAAGACTGCAGAGGCTCGAGTTTGACAACTGTTTCAGAGTGACTGACGA
CGCTATGGATGCTCTCGCGGCCTCTGATGAAGTTGCCAACCTCAGGCACC
TCTCAATTGCTCACAACGTGGGCCTCCACGAACCTGCGATCAGAGGGCTC
CTCTCGAGGCTGCCGAGGGCACTGTTTTTGAATGTGAGCAAATGCAACGT
CACTGGCGACACTCTCAATGCCCTCCCTCCACGAGAGAGTGCGGAGGCAG
GAGACGACAGTGTTGCGCTGGAGGAATTGGTCGCCTCGCAATGTGCTGGC
GTCACCTCAGTTGAGGATCTCATGGTGAGGGCAAAGGACCTCTCCAGAGT
GGACCTGAGGAAGACTGGCCTCACCGACGCTTCCGTCAAGGCAATGAGTG
ACCATTGCAGAGGTCTTCGCCAGGTGAACATCAGCGACTGTGGCTCCATC
AGCGACGACGGAGCAATTACGCTGGCGACCCTTCCTCTGGAGGACTTGAA
CGTCTCCTCCTGCCCCCACATCACAGACGAGCTCATCCAGTATCTGGTGC
AGTACTGCACACCGATGCTGTGATTGCCACTGCTGTCCAGCACACTCCTC
TCCTGGAGAGCCTCATTGTGAGCAACTGCAAGAAGCTCACCGACTTCGGC
ATCCAGCACGCCGTCAAGCTCTTGGCAATGGGAAGACTGCAGAGGCTCGA
GTTTGACAACTGTTTCAGAGTGACTGACGACGCTATGGATGCTCTCGCGG
CCTCTGATGAAGTTGCCAACCTCAGGCACCTCTCAATTGCTCACAACGTG
GGCCTCCACGAACCTGCGATCAGAGGGCTCCTCTCGAGGCTGCCGAGGGC
ACTGTTTTTGAATGTGAGCAAATGCAACGTCACTGGCGACACTCTCAATG
CCCTCCCTCCACGAGAGAGTGCGGAGGCAGGAGACGACAGTGTTGCGCTG
GAGGAATTGGTCGCCTCGCAATGTGCTGGCGTCACCTCAGTTGAGGATCT
CATGGTGAGGGCAAAGGACCTCTCCAGAGTGGACCTGAGGAAGACTGGCC
TCACCGACGCTTCCGTCAAGGCAATGAGTGACCATTGCAGAGGTCTTCGC
CAGGTGAACATCAGCGACTGTGGCTCCATCAGCGACGACGGAGCAATTAC
GCTGGCGACCCTTCCTCTGGAGGACTTGAACGTCTCCTCCTGCCCCCACA
TCACAGACGAGCTCATCCAGTATCTGGTGCAGTACTGC
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