mRNA_M-pyrifera_M_contig83090.19412.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83090.19412.1
Unique NamemRNA_M-pyrifera_M_contig83090.19412.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83090.19412.1 vs. uniprot
Match: A0A2D9CKA2_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9CKA2_9BACT)

HSP 1 Score: 125 bits (314), Expect = 6.900e-31
Identity = 85/202 (42.08%), Postives = 111/202 (54.95%), Query Frame = 1 
Query:   22 ALADLIYSENFEQETS-LIQFWNSTTMTGYADPFGNFLGRFGNTTVRLEIDS--AVTGGSGSNP-NTQDNHVTPTDAHFEFNR-PLPD-----GGNIMPHEGGTTGNTFPGLDLSE----SGNSID----DGLYHAGTYALTFDLYLFDSWDWSYEGFGPDGVAVAVNGVTLFDELFDVHYLPNNFRMPDELPGASAANTNW 573
            A+A  IY   FE         W+         P+ N LGRFGN +V L +++  A T G G++  N Q  ++T  +   +  R P+ D     GG I P    T   + P LDL      SG  ID    + L+ AG Y+LTFDL +FDSWD +YEGFGPD  +V +NG TLFDEL ++H+LPNNFRMPDELP  +    NW
Sbjct:  126 AVAGPIYGIGFENPGGDSAGVWSQDVRAELGGPYTNVLGRFGNESVSLTLNATEANTAGLGTDQGNGQTYNITRREYSADRERVPMLDSSGGGGGVIQPPFPSTY--SGPKLDLGNAVKNSGGVIDPPSTEPLFTAGIYSLTFDLMIFDSWDGNYEGFGPDHFSVDINGQTLFDELIEIHWLPNNFRMPDELPELNVYKQNW 325
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83090.19412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D9CKA2_9BACT6.900e-3142.08Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83090contigM-pyrifera_M_contig83090:329..901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.968596-CDS-M-pyrifera_M_contig83090:328..9011622816737.968596-CDS-M-pyrifera_M_contig83090:328..901Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83090 329..901 +
1692278149.078051-CDS-M-pyrifera_M_contig83090:328..9011692278149.078051-CDS-M-pyrifera_M_contig83090:328..901Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83090 329..901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83090.19412.1prot_M-pyrifera_M_contig83090.19412.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83090 329..901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83090.19412.1

>prot_M-pyrifera_M_contig83090.19412.1 ID=prot_M-pyrifera_M_contig83090.19412.1|Name=mRNA_M-pyrifera_M_contig83090.19412.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MLLASSPALADLIYSENFEQETSLIQFWNSTTMTGYADPFGNFLGRFGNT
TVRLEIDSAVTGGSGSNPNTQDNHVTPTDAHFEFNRPLPDGGNIMPHEGG
TTGNTFPGLDLSESGNSIDDGLYHAGTYALTFDLYLFDSWDWSYEGFGPD
GVAVAVNGVTLFDELFDVHYLPNNFRMPDELPGASAANTNW
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mRNA from alignment at M-pyrifera_M_contig83090:329..901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83090.19412.1 ID=mRNA_M-pyrifera_M_contig83090.19412.1|Name=mRNA_M-pyrifera_M_contig83090.19412.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig83090:329..901+ (Macrocystis pyrifera P11B4 male)
ATGCTGCTCGCATCCTCTCCCGCGCTCGCTGATCTAATCTACAGCGAGAA
CTTCGAGCAGGAAACATCGCTCATCCAGTTCTGGAACAGCACGACGATGA
CAGGCTACGCAGATCCCTTTGGCAACTTTCTTGGACGATTCGGGAACACG
ACTGTTCGGCTCGAGATCGACTCAGCTGTCACGGGGGGAAGCGGGAGCAA
CCCCAACACACAGGATAATCATGTCACTCCCACTGACGCGCACTTCGAGT
TCAATCGTCCACTCCCGGATGGAGGAAACATCATGCCGCACGAGGGAGGC
ACGACGGGCAACACTTTTCCTGGACTCGATCTCTCTGAATCGGGGAACTC
GATCGATGACGGGCTCTATCACGCTGGGACATATGCGCTGACTTTCGATC
TCTATCTCTTCGATTCGTGGGACTGGTCATACGAAGGCTTCGGTCCTGAC
GGCGTCGCGGTCGCGGTCAACGGCGTGACCCTCTTCGACGAGCTCTTCGA
TGTGCATTATCTCCCCAACAACTTCAGGATGCCCGATGAGCTCCCCGGCG
CATCAGCGGCAAACACGAACTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83090:329..901+

>mRNA_M-pyrifera_M_contig83090.19412.1 ID=mRNA_M-pyrifera_M_contig83090.19412.1|Name=mRNA_M-pyrifera_M_contig83090.19412.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig83090:329..901+ (Macrocystis pyrifera P11B4 male)
ATGCTGCTCGCATCCTCTCCCGCGCTCGCTGATCTAATCTACAGCGAGAA
CTTCGAGCAGGAAACATCGCTCATCCAGTTCTGGAACAGCACGACGATGA
CAGGCTACGCAGATCCCTTTGGCAACTTTCTTGGACGATTCGGGAACACG
ACTGTTCGGCTCGAGATCGACTCAGCTGTCACGGGGGGAAGCGGGAGCAA
CCCCAACACACAGGATAATCATGTCACTCCCACTGACGCGCACTTCGAGT
TCAATCGTCCACTCCCGGATGGAGGAAACATCATGCCGCACGAGGGAGGC
ACGACGGGCAACACTTTTCCTGGACTCGATCTCTCTGAATCGGGGAACTC
GATCGATGACGGGCTCTATCACGCTGGGACATATGCGCTGACTTTCGATC
TCTATCTCTTCGATTCGTGGGACTGGTCATACGAAGGCTTCGGTCCTGAC
GGCGTCGCGGTCGCGGTCAACGGCGTGACCCTCTTCGACGAGCTCTTCGA
TGTGCATTATCTCCCCAACAACTTCAGGATGCCCGATGAGCTCCCCGGCG
CATCAGCGGCAAACACGAACTGGATGCTGCTCGCATCCTCTCCCGCGCTC
GCTGATCTAATCTACAGCGAGAACTTCGAGCAGGAAACATCGCTCATCCA
GTTCTGGAACAGCACGACGATGACAGGCTACGCAGATCCCTTTGGCAACT
TTCTTGGACGATTCGGGAACACGACTGTTCGGCTCGAGATCGACTCAGCT
GTCACGGGGGGAAGCGGGAGCAACCCCAACACACAGGATAATCATGTCAC
TCCCACTGACGCGCACTTCGAGTTCAATCGTCCACTCCCGGATGGAGGAA
ACATCATGCCGCACGAGGGAGGCACGACGGGCAACACTTTTCCTGGACTC
GATCTCTCTGAATCGGGGAACTCGATCGATGACGGGCTCTATCACGCTGG
GACATATGCGCTGACTTTCGATCTCTATCTCTTCGATTCGTGGGACTGGT
CATACGAAGGCTTCGGTCCTGACGGCGTCGCGGTCGCGGTCAACGGCGTG
ACCCTCTTCGACGAGCTCTTCGATGTGCATTATCTCCCCAACAACTTCAG
GATGCCCGATGAGCTCCCCGGCGCATCAGCGGCAAACACGAACTGG
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