mRNA_M-pyrifera_M_contig83027.19398.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83027.19398.1
Unique NamemRNA_M-pyrifera_M_contig83027.19398.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: A0A5A8EDR9_CAFRO (Cytochrome b5 heme-binding domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EDR9_CAFRO)

HSP 1 Score: 203 bits (517), Expect = 2.880e-58
Identity = 112/286 (39.16%), Postives = 168/286 (58.74%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKL-LEGVEG---------VSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEAL-WCAVNHFRQSFSNPQTVADP-SSLPPDRRSAIPPRFDKITKSMLAEHKDPEDAWLMVGNRVYDVTKFVDDHPGGEEALMAHTGKDATEAFRGIQHGENVKDMIEQYLIGAMVDD 822
            I+G RD    P + + ++  RGK V+G G N+VDFTYV NV+HGH LA ++L  E   G         +SG+AFFV++D PLPFW+ V R++ A  YP A +R+PY L   IATL   +  + +++  +    L  +P R+ I  T HWY  ++AK  LGY+  WN ++AL   A+++    +S P  V  P   +  + R    P+    +++ +A+H    DAWL+V  +V+DVT FVD HPGG +A++ + GKDA+E F G QH ENV + +    IG + D+
Sbjct:  237 IFGPRDTQAVPGICEVSSTWRGKLVLGDGNNMVDFTYVGNVVHGHILALQRLHAEATSGKPGGKDGSRISGKAFFVTNDEPLPFWSFVARVKAAMRYPAASVRIPYRLAHGIATLQEAVAGIVASMRGTKPTPLHLSPQRVAIAGTAHWYKCDRAKAALGYSPVWNMDQALALTAMSYPSLVYSGPGAVRSPIEQVDEECRPCDLPQM-AFSRAEVAQHNTDGDAWLIVDGKVHDVTYFVDTHPGGPDAVLRNAGKDASEGFHGDQHPENVVETLADLRIGWVEDE 521          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: A0A4D9CSF7_9STRA (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSF7_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.640e-51
Identity = 105/271 (38.75%), Postives = 155/271 (57.20%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHFRQSFSNPQTVADPSSLPPDRRSAIPPRFDKITKSMLAEHKDPEDAWLMVGNRVYDVTKFVDDHPGGEEALMAHTGKDATEAFRGIQHGENVKDMIEQYLIGAM 813
            I+G  D  F+P L++    G+ K+ +G G NV DFT+V NV H H LAAEKL   V GV G+AFFV++D P+PFW  + ++   FGYP   +RLP  L+  +   +  + +L   +     P  TF   R+    T H+YSIEKAKRLLGY   W+ EEAL         + +NP+    P  +   +  ++P      T   ++ H    DAW++V  +VYDVT++VD HPG ++A++   G D+++ F G QH  +V D+I +Y IGA+
Sbjct:  235 IFGPGDRQFFPVLVESARKGKTKYALGEGRNVADFTFVGNVAHAHLLAAEKLGR-VPGVDGQAFFVTNDAPVPFWDFLAQVLTGFGYPAPSVRLPAGLMTVVGGWMDGMATLLRMVGVRFQP--TFTRSRVQYLTTHHYYSIEKAKRLLGYAPAWSQEEALALCFQCMMPALANPR-APKPRRVTVKKGQSVP----IYTVQQVSRHNTRGDAWIVVDGKVYDVTEYVDVHPG-DDAILRFVGGDSSKGFHGPQHPVSVWDVIAEYEIGAV 496          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: A0A812ZSQ0_9DINO (NSDHL protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZSQ0_9DINO)

HSP 1 Score: 175 bits (443), Expect = 7.670e-48
Identity = 103/262 (39.31%), Postives = 147/262 (56.11%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVH-LLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHFRQSFSNPQTVADPSSLPPDRRSAIPPRFDKITKSMLAEHKDPEDAWLMVGNRVYDVTKFVDDHPGGEEALMAHTGKDATEAFRGIQHGENVKD 783
            I+G RDP   P L     AGR K  IGS  N+VDFTYV NV+HGH  AAE  ++G    +G+ +F+++D PLPFW  + R+ L  GY    +RLPY  + +++ +V  +L SL + L +  A  +TF P  + I  T HWYS E AKR L Y   W+   AL   +  F       Q +A P + P        P F   T + +AEH   +D W+++   VYD+T++VD HPG ++A+  + G DA+E F G QH ++V D
Sbjct:  232 IFGPRDPALVPRLTANAKAGRTKVAIGSTDNIVDFTYVGNVVHGHMRAAEAAVKG-SPANGKTYFITNDDPLPFWEFMSRVCLGLGYQAPTLRLPYGFMLAVSYIVDGILASLNAVLGTKLA--ITFTPSVVQIAGTHHWYSCEAAKRDLKYEPVWDMYSALLVTLRSF-------QHLAAPGAKPL-------PEFKTFTAAEVAEHNSLQDLWVIIDGDVYDLTEYVDQHPG-KDAIGNNAGGDASEGFHGEQHPDHVVD 475          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: A0A1V9YKL1_9STRA (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating isoform X1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKL1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.390e-41
Identity = 94/273 (34.43%), Postives = 145/273 (53.11%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHFRQSFSNPQTVADPSSLPPDRRSAIPPRFDKITKSMLAEHKDPEDAWLMVGNRVYDVTKFVDDHPGGEEALMAHTGKDATEAFRGIQHGENVKDMIEQYLIGAMVD 819
            ++G R+  + P+L+    AG  KF +G+G+N+VD TYV NV+H   L AE+L    +  +G+A+F+++D P+  W  +G I +A GY P  I +PY L    A L               AP    +P +L +    H+YS  KAKR LGY   ++ EE L   +  F            P S    + + +   + K T++ +A H    DAW++V ++VYD+T++V+DHPGG  +++   G DAT  F G QH   V + I +YLIG + D
Sbjct:  222 MFGPREAHYMPSLLAAAKAGSMKFQVGTGSNLVDMTYVGNVVHALFLVAEQLSADAK-CAGQAYFITNDAPVSLWETIGHILMAMGYHPPSIAVPYGLCAFAAAL-------------GLAP---VSPAKLPMLGQHHYYSCAKAKRDLGYAPLYSVEEGLTLTLATFA-------AARGPHSFEQFKPAYLQREYRKYTRAEVAVHNKETDAWIIVKDKVYDITEYVEDHPGGL-SILNDAGGDATVGFYGPQHPPTVAEHILEYLIGELED 469          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: A0A067CV26_SAPPC (Cytochrome b5 heme-binding domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CV26_SAPPC)

HSP 1 Score: 155 bits (391), Expect = 2.670e-40
Identity = 94/276 (34.06%), Postives = 147/276 (53.26%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHFRQSFSNPQTVAD---PSSLPPDRRSAIPPRFDKITKSMLAEHKDPEDAWLMVGNRVYDVTKFVDDHPGGEEALMAHTGKDATEAFRGIQHGENVKDMIEQYLIGAMVD 819
            ++G R+  + P+L+    AG  K+ +G+G N VD TYV NV+H   LAA+KL  G +  +G+A+F+++D P+  W  +G I +A GY P  I +PY +    A              +  AP  T    +L +    H+YS EKAKR LGY   ++ EE L   +           T+ D   P S    + + +   + K T++ +A H    DAW++V ++V+D+T++V+DHPGG  +++   G DAT  F G QH   V + I +YLIG + D
Sbjct:  224 MFGPREAHYMPSLLAAAKAGTTKYQVGAGQNRVDLTYVGNVVHALLLAADKLSPGAKS-AGQAYFITNDAPVSLWDTIGHILMAMGYNPPSIAVPYGVCMLAAA-------------TGLAPVTTA---KLPMLGQHHFYSCEKAKRDLGYAPLYSVEEGLTLTL----------ATLTDARGPHSFEQFKPAYLTREYRKYTRAQVAMHNKEHDAWIIVKDKVFDITEYVEDHPGGL-SILNDVGGDATVGFYGPQHPPTVAEHILEYLIGEIDD 471          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: A0A1V9Y8M4_9STRA (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating isoform X1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8M4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.780e-37
Identity = 94/275 (34.18%), Postives = 148/275 (53.82%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHFRQSFSNPQTV--ADPSSLPPDRRSAIPPRFDKITKSMLAEHKDPEDAWLMVGNRVYDVTKFVDDHPGGEEALMAHTGKDATEAFRGIQHGENVKDMIEQYLIGAMVD 819
            ++G R+  + P L+    AG  K+ +GSG+N+ D TYV NV+HG  LAAE+L+   +   G+A+F+++D PL  W  VG I +  GY P  I +P +L  S+A+ + L                + +P +L   +  H YS  KAKR  GY   ++  E L   +  +  S   P T   A P+ L  + R        K T++ +A+H   +DAW++V  +V+D++++V+DHPGG  +++   G DAT  F G QH   V + I +YLIG + D
Sbjct:  226 MFGPREVYYMPELLAAAKAGSMKYQVGSGSNMTDMTYVGNVVHGLFLAAEQLIPASK-TCGQAYFITNDSPLLLWDTVGDILMTMGYNPPSIAVPVALC-SLASSLGL---------------TSLSPSKLLQLSQNHSYSCAKAKRDFGYAPLYSVAEGLSLTLPSYSSS-RGPHTFGHAKPAYLEREYR--------KYTRAEVAKHCTEQDAWIIVKGKVFDISEYVEDHPGGL-SILNDVGGDATVGFYGPQHPPTVAEHILEYLIGEVED 473          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: A0A7M7NHX7_STRPU (3Beta_HSD domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NHX7_STRPU)

HSP 1 Score: 141 bits (355), Expect = 3.410e-36
Identity = 72/168 (42.86%), Postives = 107/168 (63.69%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHF 504
            I+G  D    PTL++   AG+ KF+IG+GAN+VDFTYV NV+HGH LAAEKL+   + V G+AFF+++D P+PFW+ + R  +  GY      LPY L++ I+ ++  + +L    T+     +TF P ++ I  T H+YS E+AK+LLGY    + +EA+   V HF
Sbjct:  166 IFGPGDVHMVPTLVQTARAGKTKFMIGNGANLVDFTYVDNVVHGHVLAAEKLVSDPDNVGGKAFFITNDEPVPFWSVLTRFLVGLGYDAPKYHLPYLLIYFISLIIEFICTLLKPFTNI---NVTFTPMKVAIAGTYHYYSCERAKKLLGYKPIVSLDEAIQRTVEHF 330          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: G5C714_HETGA (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating n=2 Tax=Heterocephalus glaber TaxID=10181 RepID=G5C714_HETGA)

HSP 1 Score: 133 bits (335), Expect = 4.110e-33
Identity = 71/168 (42.26%), Postives = 106/168 (63.10%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHF 504
            I+G RDP   PTL++    G+ KF+IG G N+VDFT+V+NV+HGH LAAE L +    +SG+AF +++D P+PFW+ + RI +   Y P    LPY +++ +A L+ LL+++ S L        TF P R+ +  T H+YS EKAK+L+GY    + +EA+   V  F
Sbjct:  185 IFGPRDPQLVPTLVEAARKGKMKFIIGDGKNLVDFTFVENVVHGHILAAEHLSQDA-ALSGKAFHITNDEPIPFWSFLSRILIGLNYEPPKYHLPYWVVYYLALLLSLLVTMISPLVQIQP---TFTPMRVALAGTFHYYSCEKAKKLMGYQPLVSMDEAVEKTVRSF 348          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: UPI001BB22F49 (sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB22F49)

HSP 1 Score: 130 bits (327), Expect = 4.200e-32
Identity = 68/168 (40.48%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGYTAHWNYEEALWCAVNHF 504
            I+G  D    PTL++   AG+ K +IG+G N+VDFTYV NV+HGH LAAEKLL   + V G++FF+++D P+PFW+ + R  +  GY      LP+ L++ I+ ++  + +L     +     +TF P ++ I  T H+YS E+AK+LLGY    + +EA+   V HF
Sbjct:  166 IFGPGDVHMVPTLVQTAKAGKTKCMIGNGENLVDFTYVDNVVHGHILAAEKLLLHPDSVGGKSFFITNDEPVPFWSVMTRFLVGLGYDAPKYHLPFWLIYYISLIIQFICTLLKPFINI---NVTFTPMKVAIAGTYHYYSCERAKKLLGYRPIVSLDEAIQRTVEHF 330          
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Match: UPI0014555B0B (sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI0014555B0B)

HSP 1 Score: 130 bits (327), Expect = 6.080e-32
Identity = 68/152 (44.74%), Postives = 101/152 (66.45%), Query Frame = 1
Query:    1 IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAEKLLEGVEGV-SGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLWSIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLGY 453
            I+G RDP   PTL++   AG+ KF+IG G+N+VDFTYVKNV+HGH LAAEKL  G E V  G+++ +++D P+PFW  +  I +   Y P    LPY+L++ +A  + LL+ + S L +    ++TF P R+ +  T H+YS E+AK+ +GY
Sbjct:  185 IFGPRDPQLVPTLVETAKAGKMKFMIGDGSNLVDFTYVKNVVHGHILAAEKL--GKESVVCGKSYHITNDDPIPFWDFMSLILIGLNYQPPKYHLPYALIYYLAVFLQLLVWILSPLVTL---KMTFTPMRVALAGTYHYYSSERAKKDMGY 331          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83027.19398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EDR9_CAFRO2.880e-5839.16Cytochrome b5 heme-binding domain-containing prote... [more]
A0A4D9CSF7_9STRA2.640e-5138.75Cytochrome b5 heme-binding domain-containing prote... [more]
A0A812ZSQ0_9DINO7.670e-4839.31NSDHL protein (Fragment) n=1 Tax=Symbiodinium sp. ... [more]
A0A1V9YKL1_9STRA2.390e-4134.43Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
A0A067CV26_SAPPC2.670e-4034.06Cytochrome b5 heme-binding domain-containing prote... [more]
A0A1V9Y8M4_9STRA2.780e-3734.18Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
A0A7M7NHX7_STRPU3.410e-3642.863Beta_HSD domain-containing protein n=1 Tax=Strong... [more]
G5C714_HETGA4.110e-3342.26Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
UPI001BB22F494.200e-3240.48sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
UPI0014555B0B6.080e-3244.74sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83027contigM-pyrifera_M_contig83027:51..899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog112098.XP_008617183.1
Preferred nameNSDHL
KEGG rclassRC01163
KEGG koko:K07748
KEGG ReactionR07494
KEGG Pathwayko00100,ko01100,ko01130,map00100,map01100,map01130
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000252,GO:0001568,GO:0001701,GO:0001890,GO:0001892,GO:0001942,GO:0001944,GO:0003006,GO:0003674,GO:0003824,GO:0003854,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0005886,GO:0005911,GO:0006066,GO:0006629,GO:0006694,GO:0006695,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008544,GO:0008610,GO:0009058,GO:0009506,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0022404,GO:0022405,GO:0022414,GO:0023052,GO:0030054,GO:0031984,GO:0032501,GO:0032502,GO:0033764,GO:0042175,GO:0042303,GO:0042633,GO:0043009,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043588,GO:0044238,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0047012,GO:0048513,GO:0048568,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0055114,GO:0060429,GO:0060674,GO:0060711,GO:0060716,GO:0061458,GO:0065007,GO:0071704,GO:0071944,GO:0072358,GO:0072359,GO:0098773,GO:0098827,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653
EggNOG free text desc.heme binding
EggNOG OGsCOG0451@1,COG5274@1,KOG0537@2759,KOG1430@2759
EC1.1.1.170
COG Functional cat.C
BiGG ReactioniRC1080.CRv4_Au5_s12_g3440_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size849
Cds size849
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.4134598-CDS-M-pyrifera_M_contig83027:50..8991622816737.4134598-CDS-M-pyrifera_M_contig83027:50..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83027 51..899 -
1692278148.8257675-CDS-M-pyrifera_M_contig83027:50..8991692278148.8257675-CDS-M-pyrifera_M_contig83027:50..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83027 51..899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83027.19398.1prot_M-pyrifera_M_contig83027.19398.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83027 51..899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83027.19398.1

>prot_M-pyrifera_M_contig83027.19398.1 ID=prot_M-pyrifera_M_contig83027.19398.1|Name=mRNA_M-pyrifera_M_contig83027.19398.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=283bp
IYGDRDPLFWPTLMKQTAAGRGKFVIGSGANVVDFTYVKNVIHGHCLAAE
KLLEGVEGVSGEAFFVSDDCPLPFWTQVGRIQLAFGYPPAWIRLPYSLLW
SIATLVHLLLSLYSTLTSSPAPRLTFAPHRLTITATGHWYSIEKAKRLLG
YTAHWNYEEALWCAVNHFRQSFSNPQTVADPSSLPPDRRSAIPPRFDKIT
KSMLAEHKDPEDAWLMVGNRVYDVTKFVDDHPGGEEALMAHTGKDATEAF
RGIQHGENVKDMIEQYLIGAMVDDKGEWIPQF*
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mRNA from alignment at M-pyrifera_M_contig83027:51..899-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83027.19398.1 ID=mRNA_M-pyrifera_M_contig83027.19398.1|Name=mRNA_M-pyrifera_M_contig83027.19398.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=849bp|location=Sequence derived from alignment at M-pyrifera_M_contig83027:51..899- (Macrocystis pyrifera P11B4 male)
ATTTACGGAGATCGCGACCCCCTCTTCTGGCCCACGCTGATGAAGCAGAC TGCTGCGGGCCGAGGCAAGTTTGTGATTGGCAGCGGGGCCAATGTGGTGG ACTTCACCTATGTGAAAAACGTCATCCATGGACACTGTCTTGCGGCCGAA AAATTGCTCGAGGGTGTGGAAGGCGTGTCGGGAGAAGCCTTTTTCGTCTC CGATGATTGCCCATTGCCATTTTGGACGCAAGTGGGTCGCATTCAACTGG CTTTCGGGTACCCACCTGCTTGGATTCGATTGCCGTATTCTCTGCTGTGG AGCATCGCCACTCTCGTCCACCTCCTCCTCTCCCTCTACTCCACCCTCAC TTCCTCCCCAGCTCCCCGGCTCACCTTTGCGCCTCACCGCCTCACCATCA CGGCCACTGGACATTGGTACTCGATCGAGAAGGCCAAGCGATTGTTGGGC TACACTGCACACTGGAACTATGAAGAGGCGTTGTGGTGTGCCGTGAACCA TTTCCGCCAATCCTTTTCCAACCCCCAAACCGTCGCTGACCCTTCCTCCC TACCCCCCGACCGACGATCTGCCATCCCTCCACGCTTCGACAAAATCACG AAATCCATGCTTGCAGAACACAAGGATCCCGAAGACGCTTGGCTCATGGT CGGAAACAGAGTGTACGACGTGACGAAATTCGTCGACGACCACCCAGGAG GAGAAGAAGCCCTCATGGCACACACGGGCAAGGACGCAACAGAGGCATTT CGGGGCATCCAACACGGAGAAAACGTCAAGGACATGATCGAACAGTACCT CATCGGAGCAATGGTCGATGACAAGGGAGAATGGATTCCGCAGTTTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83027:51..899-

>mRNA_M-pyrifera_M_contig83027.19398.1 ID=mRNA_M-pyrifera_M_contig83027.19398.1|Name=mRNA_M-pyrifera_M_contig83027.19398.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1698bp|location=Sequence derived from alignment at M-pyrifera_M_contig83027:51..899- (Macrocystis pyrifera P11B4 male)
ATTTACGGAGATCGCGACCCCCTCTTCTGGCCCACGCTGATGAAGCAGAC
TGCTGCGGGCCGAGGCAAGTTTGTGATTGGCAGCGGGGCCAATGTGGTGG
ACTTCACCTATGTGAAAAACGTCATCCATGGACACTGTCTTGCGGCCGAA
AAATTGCTCGAGGGTGTGGAAGGCGTGTCGGGAGAAGCCTTTTTCGTCTC
CGATGATTGCCCATTGCCATTTTGGACGCAAGTGGGTCGCATTCAACTGG
CTTTCGGGTACCCACCTGCTTGGATTCGATTGCCGTATTCTCTGCTGTGG
AGCATCGCCACTCTCGTCCACCTCCTCCTCTCCCTCTACTCCACCCTCAC
TTCCTCCCCAGCTCCCCGGCTCACCTTTGCGCCTCACCGCCTCACCATCA
CGGCCACTGGACATTGGTACTCGATCGAGAAGGCCAAGCGATTGTTGGGC
TACACTGCACACTGGAACTATGAAGAGGCGTTGTGGTGTGCCGTGAACCA
TTTCCGCCAATCCTTTTCCAACCCCCAAACCGTCGCTGACCCTTCCTCCC
TACCCCCCGACCGACGATCTGCCATCCCTCCACGCTTCGACAAAATCACG
AAATCCATGCTTGCAGAACACAAGGATCCCGAAGACGCTTGGCTCATGGT
CGGAAACAGAGTGTACGACGTGACGAAATTCGTCGACGACCACCCAGGAG
GAGAAGAAGCCCTCATGGCACACACGGGCAAGGACGCAACAGAGGCATTT
CGGGGCATCCAACACGGAGAAAACGTCAAGGACATGATCGAACAGTACCT
CATCGGAGCAATGGTCGATGACAAGGGAGAATGGATTCCGCAGTTTTAGA
TTTACGGAGATCGCGACCCCCTCTTCTGGCCCACGCTGATGAAGCAGACT
GCTGCGGGCCGAGGCAAGTTTGTGATTGGCAGCGGGGCCAATGTGGTGGA
CTTCACCTATGTGAAAAACGTCATCCATGGACACTGTCTTGCGGCCGAAA
AATTGCTCGAGGGTGTGGAAGGCGTGTCGGGAGAAGCCTTTTTCGTCTCC
GATGATTGCCCATTGCCATTTTGGACGCAAGTGGGTCGCATTCAACTGGC
TTTCGGGTACCCACCTGCTTGGATTCGATTGCCGTATTCTCTGCTGTGGA
GCATCGCCACTCTCGTCCACCTCCTCCTCTCCCTCTACTCCACCCTCACT
TCCTCCCCAGCTCCCCGGCTCACCTTTGCGCCTCACCGCCTCACCATCAC
GGCCACTGGACATTGGTACTCGATCGAGAAGGCCAAGCGATTGTTGGGCT
ACACTGCACACTGGAACTATGAAGAGGCGTTGTGGTGTGCCGTGAACCAT
TTCCGCCAATCCTTTTCCAACCCCCAAACCGTCGCTGACCCTTCCTCCCT
ACCCCCCGACCGACGATCTGCCATCCCTCCACGCTTCGACAAAATCACGA
AATCCATGCTTGCAGAACACAAGGATCCCGAAGACGCTTGGCTCATGGTC
GGAAACAGAGTGTACGACGTGACGAAATTCGTCGACGACCACCCAGGAGG
AGAAGAAGCCCTCATGGCACACACGGGCAAGGACGCAACAGAGGCATTTC
GGGGCATCCAACACGGAGAAAACGTCAAGGACATGATCGAACAGTACCTC
ATCGGAGCAATGGTCGATGACAAGGGAGAATGGATTCCGCAGTTTTAG
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