mRNA_M-pyrifera_M_contig83013.19391.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83013.19391.1
Unique NamemRNA_M-pyrifera_M_contig83013.19391.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A359F6I7_9ACTN (Alpha/beta hydrolase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A359F6I7_9ACTN)

HSP 1 Score: 130 bits (328), Expect = 2.370e-35
Identity = 73/129 (56.59%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    7 GAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWFSPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQARDRYAK 393
            G  TVVGRGVGAYI LM   ARPE VRG+VL DGPGL+GG   PGS     P    G++PDPFA+ EL+ D+RPPDYA+ FVR  ++RS + +PITV A V P WLAAV  EPGVV+     A   Y +
Sbjct:  100 GEVTVVGRGVGAYIALMLIGARPESVRGVVLCDGPGLSGGGIQPGSPFVVCPQFGLGRAPDPFAMVELARDIRPPDYAVNFVRFAMERSQVPDPITVAAVVRPEWLAAVAREPGVVQRGVTTALAGYGR 228          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A7K0WST5_9ACTN (Alpha/beta hydrolase n=3 Tax=root TaxID=1 RepID=A0A7K0WST5_9ACTN)

HSP 1 Score: 123 bits (308), Expect = 2.340e-32
Identity = 70/131 (53.44%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 DVGAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWFSPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQARDRYAK 393
             +GA TV+GRG+GAYIGL+ AAARP+ V G+V++DGPGL GG   PGS +   P       PDPFAL ELS DVRPPDYA  +VR +L+ S L   + V A   P WLAAV  EPGV   T ++A   YA+
Sbjct:   97 QLGAVTVLGRGLGAYIGLLIAAARPKQVLGVVMSDGPGLVGGGIHPGSPSVAFPAPWSSSVPDPFALLELSRDVRPPDYAQTYVRFVLESSSLDRALMVCAVARPEWLAAVAAEPGVGHGTVDEALQFYAQ 227          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A6L6DXY1_9ACTN (Alpha/beta fold hydrolase n=2 Tax=root TaxID=1 RepID=A0A6L6DXY1_9ACTN)

HSP 1 Score: 121 bits (303), Expect = 9.950e-32
Identity = 73/131 (55.73%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    4 VGAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWF-SPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRE-TNEQARDRYA 390
            VG ATVVGRG+GAYI  + A ARP LVRG VL DGPGLAGGS    S T   S G   GQ+PDP+AL ELS D RPP Y   F RL +  S + +PI V  KV+PPW+ A+  EPGV+ + T + A D YA
Sbjct:   85 VGEATVVGRGLGAYIAFLIAGARPTLVRGAVLLDGPGLAGGSIHATSNTEITSAGTRTGQTPDPWALIELSRDARPPSYTTTFARLAVSGSGIADPIAVACKVAPPWVEAIRAEPGVMVDITLQDALDIYA 215          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A6I3C988_9ACTN (Alpha/beta hydrolase n=2 Tax=root TaxID=1 RepID=A0A6I3C988_9ACTN)

HSP 1 Score: 120 bits (302), Expect = 1.240e-31
Identity = 71/131 (54.20%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    7 GAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWFSPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQARDRYAKGP 399
            G  TVVGRG+GAYI L  A AR   VRG VLADGPGLAGG+  P S T F   +     PDP+ LFE+S D+RPPDYA  FVR+ ++ SD+  PITV A V PPWLAAV +E GV + +  +A   Y++ P
Sbjct:   83 GEVTVVGRGLGAYIALQLAGARAASVRGAVLADGPGLAGGAVQPTS-TSFLALEPRATPPDPYVLFEMSRDLRPPDYATLFVRMAVEGSDIDEPITVAAVVRPPWLAAVADEVGVAQSSVREALAVYSQVP 212          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A7W0KPN3_9ACTN (Alpha/beta hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KPN3_9ACTN)

HSP 1 Score: 120 bits (302), Expect = 1.560e-31
Identity = 72/130 (55.38%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    7 GAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWFSP--GDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQARDRYA 390
            G ATVVGRG+GAYI L+ A ARP  V G +L DGPGLAGG   P S     P  G + G++PDP+AL EL+ D+RP DYA  FVR  L  S L  P+ V   V PPWLAAV +EPGVV  +  QA  RYA
Sbjct:   85 GEATVVGRGLGAYIALLLAGARPGSVIGTILTDGPGLAGGGPSPQSPVSLRPAGGASLGRTPDPYALIELARDIRPADYATRFVRQALQFSGLETPVAVAGVVRPPWLAAVADEPGVVAVSLPQALARYA 214          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: UPI001C62FDD6 (alpha/beta hydrolase n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62FDD6)

HSP 1 Score: 120 bits (302), Expect = 1.560e-31
Identity = 68/128 (53.12%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    7 GAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWFSPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQARDRYA 390
            G ATVVGRG+GAY+ L+ A A PE VRG +L DGPGLAGG   PGS    +        PDPFAL EL+ DVRPPDYAM +V   ++ SDL  P+ V A V PPWL AV   PGV   T ++A   Y+
Sbjct:   92 GTATVVGRGLGAYVALLVAGACPEQVRGAILLDGPGLAGGGPAPGSPMVVAGAVLPDGPPDPFALVELTRDVRPPDYAMSWVHQAIEGSDLETPLAVAATVRPPWLLAVAGSPGVADVTLDEALALYS 219          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A7X9Q0B5_9ACTN (Alpha/beta hydrolase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9Q0B5_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 1.790e-31
Identity = 73/130 (56.15%), Postives = 87/130 (66.92%), Query Frame = 1
Query:    1 DVGAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWFSPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQARDRYA 390
             +G AT+VGRG+GAY+ LM A ARP LVRG VL DGPGL GG+ GP S T F   D    +PDP AL +LS D+RPPDYA  FVR+ L+ S L  PI VT  V PPWLAAV +E GV+  +  +A   YA
Sbjct:   83 QLGPATLVGRGLGAYVALMVAGARPLLVRGAVLCDGPGLWGGATGPTS-TSFHSVDPPYGAPDPNALIDLSRDLRPPDYAGLFVRMALEHSGLAEPIAVTGIVRPPWLAAVVDEVGVLTCSLAEAIATYA 211          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A094RS60_9ACTN (AB hydrolase-1 domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A094RS60_9ACTN)

HSP 1 Score: 120 bits (301), Expect = 1.990e-31
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    4 VGAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWF-SPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRE-TNEQARDRYA 390
            +G ATVVGRG+GAYI  + A ARP LVRG VL DGPGLAGG+    S T   S G+  G +PDP+AL ELS D RPP Y   F RL +  S + +PI VT KVSPPW+ A+  EPGV+ + T + A D YA
Sbjct:   85 IGEATVVGRGLGAYIAFLIAGARPTLVRGAVLLDGPGLAGGAIHATSNTEITSGGNRTGTTPDPWALIELSRDARPPTYTTTFARLAVSGSGIADPIAVTCKVSPPWVEAIRAEPGVMIDITLQDALDIYA 215          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A7X6SJG8_9ACTN (Alpha/beta fold hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6SJG8_9ACTN)

HSP 1 Score: 120 bits (300), Expect = 4.100e-31
Identity = 66/123 (53.66%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    7 GAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTWFSPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQA 375
            G A++VGRG+G YI L+ A ARP  V G V+ DGPGLAGG   P S T+  P  A   +PDPFAL EL+ D+RPPDYA+ F R  L+RS +  PI V+A++ P WL AV  EPGVV    E A
Sbjct:  104 GEASIVGRGLGGYIALLAAGARPLAVHGAVIDDGPGLAGGGPLPLSPTFVVPPTASSTTPDPFALLELARDIRPPDYAVSFSRFALERSPIVEPIVVSARIRPDWLEAVVAEPGVVSRPLEAA 226          
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Match: A0A431IDW7_9ACTN (Alpha/beta hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A431IDW7_9ACTN)

HSP 1 Score: 119 bits (299), Expect = 5.240e-31
Identity = 73/137 (53.28%), Postives = 90/137 (65.69%), Query Frame = 1
Query:    1 DVGAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGTW-FSP------GDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVTAKVSPPWLAAVTNEPGVVRETNEQARDRYA 390
            ++G+ TV+ RG+G+YI ++ AAARPELVRG VLADGPGL GG   PGS T  + P      G+A   SPDPFAL EL+ D RPPDY   FVR +L+ SDL  P+ V A V P WLAAV +EPG+ + T       YA
Sbjct:   90 ELGSVTVLARGLGSYIAVLAAAARPELVRGAVLADGPGLVGGGVHPGSPTVPYVPEERVPSGEAP-SSPDPFALAELARDPRPPDYVQTFVRFVLEGSDLDRPLWVAAVVRPEWLAAVADEPGIGQGTIGDGLAHYA 225          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83013.19391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A359F6I7_9ACTN2.370e-3556.59Alpha/beta hydrolase n=1 Tax=Acidimicrobiaceae bac... [more]
A0A7K0WST5_9ACTN2.340e-3253.44Alpha/beta hydrolase n=3 Tax=root TaxID=1 RepID=A0... [more]
A0A6L6DXY1_9ACTN9.950e-3255.73Alpha/beta fold hydrolase n=2 Tax=root TaxID=1 Rep... [more]
A0A6I3C988_9ACTN1.240e-3154.20Alpha/beta hydrolase n=2 Tax=root TaxID=1 RepID=A0... [more]
A0A7W0KPN3_9ACTN1.560e-3155.38Alpha/beta hydrolase n=1 Tax=Acidimicrobiia bacter... [more]
UPI001C62FDD61.560e-3153.13alpha/beta hydrolase n=1 Tax=Iamia sp. SCSIO 61187... [more]
A0A7X9Q0B5_9ACTN1.790e-3156.15Alpha/beta hydrolase n=2 Tax=Actinobacteria TaxID=... [more]
A0A094RS60_9ACTN1.990e-3154.96AB hydrolase-1 domain-containing protein n=4 Tax=r... [more]
A0A7X6SJG8_9ACTN4.100e-3153.66Alpha/beta fold hydrolase n=1 Tax=Actinomycetia ba... [more]
A0A431IDW7_9ACTN5.240e-3153.28Alpha/beta hydrolase n=1 Tax=Acidimicrobiia bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83013contigM-pyrifera_M_contig83013:487..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score120.6
Seed ortholog evalue6e-25
Seed eggNOG ortholog1313172.YM304_38760
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsCOG2267@1,COG2267@2
COG Functional cat.I
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.1650915-CDS-M-pyrifera_M_contig83013:486..9001622816737.1650915-CDS-M-pyrifera_M_contig83013:486..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83013 487..900 -
1692278148.729284-CDS-M-pyrifera_M_contig83013:486..9001692278148.729284-CDS-M-pyrifera_M_contig83013:486..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83013 487..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83013.19391.1prot_M-pyrifera_M_contig83013.19391.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83013 487..900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83013.19391.1

>prot_M-pyrifera_M_contig83013.19391.1 ID=prot_M-pyrifera_M_contig83013.19391.1|Name=mRNA_M-pyrifera_M_contig83013.19391.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
DVGAATVVGRGVGAYIGLMTAAARPELVRGLVLADGPGLAGGSAGPGSGT
WFSPGDADGQSPDPFALFELSTDVRPPDYAMGFVRLMLDRSDLTNPITVT
AKVSPPWLAAVTNEPGVVRETNEQARDRYAKGPKINA*
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mRNA from alignment at M-pyrifera_M_contig83013:487..900-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83013.19391.1 ID=mRNA_M-pyrifera_M_contig83013.19391.1|Name=mRNA_M-pyrifera_M_contig83013.19391.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig83013:487..900- (Macrocystis pyrifera P11B4 male)
GACGTCGGCGCGGCCACGGTCGTCGGGCGTGGCGTCGGCGCGTATATCGG TCTCATGACCGCGGCGGCACGGCCGGAACTCGTCAGAGGGCTCGTGCTGG CCGACGGCCCCGGTCTCGCCGGTGGTTCGGCCGGTCCGGGGTCGGGCACC TGGTTCAGTCCGGGCGATGCCGACGGGCAGAGTCCCGATCCGTTCGCTCT GTTCGAACTGTCGACCGATGTGCGGCCACCCGACTACGCCATGGGCTTCG TTCGGTTGATGCTCGATCGCTCTGACCTGACCAATCCGATCACCGTGACG GCGAAGGTGTCGCCACCGTGGCTTGCCGCGGTCACGAACGAGCCTGGAGT CGTGCGGGAGACCAACGAGCAGGCTCGTGATCGTTATGCCAAGGGTCCCA AGATCAACGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83013:487..900-

>mRNA_M-pyrifera_M_contig83013.19391.1 ID=mRNA_M-pyrifera_M_contig83013.19391.1|Name=mRNA_M-pyrifera_M_contig83013.19391.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig83013:487..900- (Macrocystis pyrifera P11B4 male)
GACGTCGGCGCGGCCACGGTCGTCGGGCGTGGCGTCGGCGCGTATATCGG
TCTCATGACCGCGGCGGCACGGCCGGAACTCGTCAGAGGGCTCGTGCTGG
CCGACGGCCCCGGTCTCGCCGGTGGTTCGGCCGGTCCGGGGTCGGGCACC
TGGTTCAGTCCGGGCGATGCCGACGGGCAGAGTCCCGATCCGTTCGCTCT
GTTCGAACTGTCGACCGATGTGCGGCCACCCGACTACGCCATGGGCTTCG
TTCGGTTGATGCTCGATCGCTCTGACCTGACCAATCCGATCACCGTGACG
GCGAAGGTGTCGCCACCGTGGCTTGCCGCGGTCACGAACGAGCCTGGAGT
CGTGCGGGAGACCAACGAGCAGGCTCGTGATCGTTATGCCAAGGGTCCCA
AGATCAACGCCTGAGACGTCGGCGCGGCCACGGTCGTCGGGCGTGGCGTC
GGCGCGTATATCGGTCTCATGACCGCGGCGGCACGGCCGGAACTCGTCAG
AGGGCTCGTGCTGGCCGACGGCCCCGGTCTCGCCGGTGGTTCGGCCGGTC
CGGGGTCGGGCACCTGGTTCAGTCCGGGCGATGCCGACGGGCAGAGTCCC
GATCCGTTCGCTCTGTTCGAACTGTCGACCGATGTGCGGCCACCCGACTA
CGCCATGGGCTTCGTTCGGTTGATGCTCGATCGCTCTGACCTGACCAATC
CGATCACCGTGACGGCGAAGGTGTCGCCACCGTGGCTTGCCGCGGTCACG
AACGAGCCTGGAGTCGTGCGGGAGACCAACGAGCAGGCTCGTGATCGTTA
TGCCAAGGGTCCCAAGATCAACGCCTGA
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