mRNA_M-pyrifera_M_contig83006.19390.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig83006.19390.1
Unique NamemRNA_M-pyrifera_M_contig83006.19390.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig83006.19390.1 vs. uniprot
Match: A0A6H5KLX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.150e-23
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    7 DEYGDGWAGALPGRVDTWSITQALSASDLTSPVGDGSLSSGHYSAVNSLCLEDGYYTFTSTANSAWSSEASWTVCGVQGGSGGTLEFE 270
            DEYGDGW G LP R +TW++T A S+S     V +G+L   H+S +  LCL+DG Y+F +TA++AWSSE++W VC V GG GG+L+FE
Sbjct:  221 DEYGDGWVGGLPDRSNTWTLTDASSSS----VVAEGTLHDWHFSGMTKLCLQDGDYSFETTADAAWSSESAWNVCEVDGGMGGSLDFE 304
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BLAST of mRNA_M-pyrifera_M_contig83006.19390.1 vs. uniprot
Match: D7G003_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G003_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.990e-23
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:    7 DEYGDGWAGALPGRVDTWSITQALSASDLTSPVGDGSLSSGHYSAVNSLCLEDGYYTFTSTANSAWSSEASWTVCGVQGGSGGTLEFE 270
            DEYGDGW G LP R +TW++T A S+S     V +G+L   H+S +  LCL+DG Y+F +TA +AWSS+++W VC V GG GG+LEFE
Sbjct:  123 DEYGDGWVGGLPDRSNTWALTDAASSS----VVAEGTLHDWHFSGMTKLCLQDGDYSFETTAYTAWSSDSAWNVCEVDGGMGGSLEFE 206
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig83006.19390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLX8_9PHAE2.150e-2353.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G003_ECTSI3.990e-2353.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig83006contigM-pyrifera_M_contig83006:476..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816737.12417-CDS-M-pyrifera_M_contig83006:475..7481622816737.12417-CDS-M-pyrifera_M_contig83006:475..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83006 476..748 -
1692278148.7144902-CDS-M-pyrifera_M_contig83006:475..7481692278148.7144902-CDS-M-pyrifera_M_contig83006:475..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig83006 476..748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig83006.19390.1prot_M-pyrifera_M_contig83006.19390.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig83006 476..748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig83006.19390.1

>prot_M-pyrifera_M_contig83006.19390.1 ID=prot_M-pyrifera_M_contig83006.19390.1|Name=mRNA_M-pyrifera_M_contig83006.19390.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MEDEYGDGWAGALPGRVDTWSITQALSASDLTSPVGDGSLSSGHYSAVNS
LCLEDGYYTFTSTANSAWSSEASWTVCGVQGGSGGTLEFEA
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mRNA from alignment at M-pyrifera_M_contig83006:476..748-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig83006.19390.1 ID=mRNA_M-pyrifera_M_contig83006.19390.1|Name=mRNA_M-pyrifera_M_contig83006.19390.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig83006:476..748- (Macrocystis pyrifera P11B4 male)
ATGGAGGACGAGTACGGCGACGGCTGGGCCGGAGCCCTTCCCGGGCGGGT
TGACACCTGGAGCATCACGCAGGCCCTATCCGCATCGGACCTAACTTCCC
CAGTGGGTGATGGGTCCTTGTCATCTGGTCACTACTCGGCGGTGAACAGC
CTATGCCTTGAAGATGGCTACTACACGTTCACATCCACTGCTAACTCGGC
GTGGAGTTCGGAGGCGTCGTGGACTGTTTGCGGCGTGCAGGGAGGGTCGG
GCGGAACGCTGGAGTTCGAGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig83006:476..748-

>mRNA_M-pyrifera_M_contig83006.19390.1 ID=mRNA_M-pyrifera_M_contig83006.19390.1|Name=mRNA_M-pyrifera_M_contig83006.19390.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig83006:476..748- (Macrocystis pyrifera P11B4 male)
ATGGAGGACGAGTACGGCGACGGCTGGGCCGGAGCCCTTCCCGGGCGGGT
TGACACCTGGAGCATCACGCAGGCCCTATCCGCATCGGACCTAACTTCCC
CAGTGGGTGATGGGTCCTTGTCATCTGGTCACTACTCGGCGGTGAACAGC
CTATGCCTTGAAGATGGCTACTACACGTTCACATCCACTGCTAACTCGGC
GTGGAGTTCGGAGGCGTCGTGGACTGTTTGCGGCGTGCAGGGAGGGTCGG
GCGGAACGCTGGAGTTCGAGGCAATGGAGGACGAGTACGGCGACGGCTGG
GCCGGAGCCCTTCCCGGGCGGGTTGACACCTGGAGCATCACGCAGGCCCT
ATCCGCATCGGACCTAACTTCCCCAGTGGGTGATGGGTCCTTGTCATCTG
GTCACTACTCGGCGGTGAACAGCCTATGCCTTGAAGATGGCTACTACACG
TTCACATCCACTGCTAACTCGGCGTGGAGTTCGGAGGCGTCGTGGACTGT
TTGCGGCGTGCAGGGAGGGTCGGGCGGAACGCTGGAGTTCGAGGCA
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