mRNA_M-pyrifera_M_contig82984.19385.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82984.19385.1
Unique NamemRNA_M-pyrifera_M_contig82984.19385.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: UPI000B3E0F47 (integrin alpha-4 isoform X2 n=2 Tax=Galliformes TaxID=8976 RepID=UPI000B3E0F47)

HSP 1 Score: 53.9 bits (128), Expect = 1.780e-6
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P ES  R    VY+ ++S  +     +G  L+  +S  ARFG SIA LGD++ DG   +VA+GAP
Sbjct:  306 DLNSDGLSDLLVGAPMESTIREEGRVYVYINSGSEAKMVELGIELSGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 383          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7K7B0Y3_9AVES (ITA4 protein (Fragment) n=3 Tax=Nothoprocta TaxID=8806 RepID=A0A7K7B0Y3_9AVES)

HSP 1 Score: 53.9 bits (128), Expect = 1.840e-6
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P +S  R    VY+ ++S  +     + T L+  +S  ARFG SIA LGD++ DG + +VA+GAP
Sbjct:  316 DLNSDGLSDLLVGAPMQSTIREEGRVYVYINSGSEAKMAELDTELSGSDSYAARFGESIANLGDIDNDG-YEDVAIGAP 393          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7M4F477_CROPO (Integrin subunit alpha 4 n=1 Tax=Crocodylus porosus TaxID=8502 RepID=A0A7M4F477_CROPO)

HSP 1 Score: 53.5 bits (127), Expect = 2.500e-6
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P +S  R    VY+ ++S  K     +   LA  +S  ARFG SIA LGD++ DG   +VA+GAP
Sbjct:  299 DLNADGLSDLLVGAPMQSKVREEGRVYVYINSGSKAAMEELELELAGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 376          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A3M1VKJ6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M1VKJ6_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.360e-6
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 VGDWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIF--PRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            +GD++GDGK E+ +G+P  + A G + +Y   SSS K+IF  P+  T+ A         GAS++  GDLN DG   ++  GAP
Sbjct:   41 IGDFNGDGKPEIAIGVPRTNIAGGEVRIY---SSSGKKIFTLPKTATTTA------DGLGASVSPAGDLNQDGFD-DIIAGAP 113          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A1U7SC12_ALLSI (integrin alpha-4 n=1 Tax=Alligator sinensis TaxID=38654 RepID=A0A1U7SC12_ALLSI)

HSP 1 Score: 53.1 bits (126), Expect = 3.380e-6
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P +S  R    VY+ ++S  K     +   LA  +S  ARFG SIA LGD++ DG  ++VA+GAP
Sbjct:  295 DLNADGFSDLLVGAPMQSKVREEGRVYVYINSGSKAEMKELELELAGSDSYAARFGESIANLGDIDNDG-FKDVAIGAP 372          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A151LZP9_ALLMI (Integrin alpha-4 n=6 Tax=Crocodylia TaxID=1294634 RepID=A0A151LZP9_ALLMI)

HSP 1 Score: 53.1 bits (126), Expect = 3.430e-6
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P +S  R    VY+ ++S  K     +   LA  +S  ARFG SIA LGD++ DG  ++VA+GAP
Sbjct:  309 DLNADGFSDLLVGAPMQSKVREEGRVYVYINSGSKAEMKELELELAGSDSYAARFGESIANLGDIDNDG-FKDVAIGAP 386          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: UPI001CF7C16F (integrin alpha-4 isoform X1 n=3 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7C16F)

HSP 1 Score: 53.1 bits (126), Expect = 3.430e-6
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFAR--GSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D +GDG  +++VG P +S  R  G ++VY+   S  K I   + T+LA  +   ARFG SIA LGD++ DG   +VA+GAP
Sbjct:  341 DLNGDGFSDLLVGAPMDSKVREEGRVYVYINSGSEAKMI--ELETALAGSDLYAARFGESIANLGDIDNDG-FEDVAIGAP 418          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: UPI0005206A69 (LOW QUALITY PROTEIN: integrin alpha-4-like n=1 Tax=Gavia stellata TaxID=37040 RepID=UPI0005206A69)

HSP 1 Score: 52.8 bits (125), Expect = 4.660e-6
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P +S  R    VY+ ++S  +     + T L+  +S  ARFG SIA LGD++ DG   +VA+GAP
Sbjct:  281 DLNSDGLSDLLVGAPMQSTIREEGRVYVYINSGSEAKMVELNTELSGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 358          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7L3N616_9AVES (ITA4 protein (Fragment) n=3 Tax=Trochilidae TaxID=9242 RepID=A0A7L3N616_9AVES)

HSP 1 Score: 52.8 bits (125), Expect = 4.670e-6
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P +S  R    VY+ ++S  +     + T+L+  +S  ARFG SIA LGD++ DG   +VA+GAP
Sbjct:  208 DLNADGLSDLLVGAPMQSTIREEGRVYVYINSGSEAKMVELDTALSGSDSYAARFGESIANLGDIDNDG-FEDVAIGAP 285          
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Match: A0A7K8XQD5_9PICI (ITA4 protein (Fragment) n=1 Tax=Eubucco bourcierii TaxID=91767 RepID=A0A7K8XQD5_9PICI)

HSP 1 Score: 52.8 bits (125), Expect = 4.690e-6
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    7 DWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIFESPGARFGASIALLGDLNTDGSHREVAVGAP 243
            D + DG  +++VG P +S  R    VY+ ++S  K     +   L+  +S  ARFG SIA LGD++ DG   +VA+GAP
Sbjct:  313 DLNSDGLSDLLVGAPMQSTVREEGRVYVYINSGSKAKMVELNIELSGSDSHAARFGESIANLGDIDNDG-FEDVAIGAP 390          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82984.19385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B3E0F471.780e-640.51integrin alpha-4 isoform X2 n=2 Tax=Galliformes Ta... [more]
A0A7K7B0Y3_9AVES1.840e-639.24ITA4 protein (Fragment) n=3 Tax=Nothoprocta TaxID=... [more]
A0A7M4F477_CROPO2.500e-640.51Integrin subunit alpha 4 n=1 Tax=Crocodylus porosu... [more]
A0A3M1VKJ6_9BACT3.360e-639.76Uncharacterized protein n=1 Tax=Candidatus Dadabac... [more]
A0A1U7SC12_ALLSI3.380e-640.51integrin alpha-4 n=1 Tax=Alligator sinensis TaxID=... [more]
A0A151LZP9_ALLMI3.430e-640.51Integrin alpha-4 n=6 Tax=Crocodylia TaxID=1294634 ... [more]
UPI001CF7C16F3.430e-643.21integrin alpha-4 isoform X1 n=3 Tax=Varanus komodo... [more]
UPI0005206A694.660e-639.24LOW QUALITY PROTEIN: integrin alpha-4-like n=1 Tax... [more]
A0A7L3N616_9AVES4.670e-639.24ITA4 protein (Fragment) n=3 Tax=Trochilidae TaxID=... [more]
A0A7K8XQD5_9PICI4.690e-639.24ITA4 protein (Fragment) n=1 Tax=Eubucco bourcierii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82984contigM-pyrifera_M_contig82984:10..261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.6347892-CDS-M-pyrifera_M_contig82984:9..2611622816736.6347892-CDS-M-pyrifera_M_contig82984:9..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82984 10..261 -
1692278148.294286-CDS-M-pyrifera_M_contig82984:9..2611692278148.294286-CDS-M-pyrifera_M_contig82984:9..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82984 10..261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82984.19385.1prot_M-pyrifera_M_contig82984.19385.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82984 10..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82984.19385.1

>prot_M-pyrifera_M_contig82984.19385.1 ID=prot_M-pyrifera_M_contig82984.19385.1|Name=mRNA_M-pyrifera_M_contig82984.19385.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
VGDWDGDGKEEVIVGLPEESFARGSIHVYLTLSSSPKEIFPRVGTSLAIF
ESPGARFGASIALLGDLNTDGSHREVAVGAPGIE
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mRNA from alignment at M-pyrifera_M_contig82984:10..261-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82984.19385.1 ID=mRNA_M-pyrifera_M_contig82984.19385.1|Name=mRNA_M-pyrifera_M_contig82984.19385.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig82984:10..261- (Macrocystis pyrifera P11B4 male)
GTAGGGGATTGGGATGGAGATGGCAAGGAAGAGGTGATTGTAGGGTTGCC TGAAGAGTCTTTTGCACGCGGGAGCATCCATGTGTATCTCACATTATCTT CATCGCCAAAGGAAATTTTCCCAAGAGTAGGAACGTCATTAGCAATTTTC GAATCTCCAGGTGCCAGGTTTGGTGCATCCATTGCCCTCCTTGGAGACCT CAATACAGATGGATCACATCGAGAAGTTGCAGTTGGTGCTCCTGGGATTG AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82984:10..261-

>mRNA_M-pyrifera_M_contig82984.19385.1 ID=mRNA_M-pyrifera_M_contig82984.19385.1|Name=mRNA_M-pyrifera_M_contig82984.19385.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig82984:10..261- (Macrocystis pyrifera P11B4 male)
GTAGGGGATTGGGATGGAGATGGCAAGGAAGAGGTGATTGTAGGGTTGCC
TGAAGAGTCTTTTGCACGCGGGAGCATCCATGTGTATCTCACATTATCTT
CATCGCCAAAGGAAATTTTCCCAAGAGTAGGAACGTCATTAGCAATTTTC
GAATCTCCAGGTGCCAGGTTTGGTGCATCCATTGCCCTCCTTGGAGACCT
CAATACAGATGGATCACATCGAGAAGTTGCAGTTGGTGCTCCTGGGATTG
AAGTAGGGGATTGGGATGGAGATGGCAAGGAAGAGGTGATTGTAGGGTTG
CCTGAAGAGTCTTTTGCACGCGGGAGCATCCATGTGTATCTCACATTATC
TTCATCGCCAAAGGAAATTTTCCCAAGAGTAGGAACGTCATTAGCAATTT
TCGAATCTCCAGGTGCCAGGTTTGGTGCATCCATTGCCCTCCTTGGAGAC
CTCAATACAGATGGATCACATCGAGAAGTTGCAGTTGGTGCTCCTGGGAT
TGAA
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