mRNA_M-pyrifera_M_contig82944.19379.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82944.19379.1
Unique NamemRNA_M-pyrifera_M_contig82944.19379.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: A0A7S2RJG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJG3_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.270e-37
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D+VMCRK  G ++GR+C +CDG+CVICDS VRP     +CDEC YG+    CVIC G   +DA  C ECCQQEKDR+GCPKI+N+G  + D +++ K  G
Sbjct:    7 DLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPATLVRICDECNYGSYEGRCVICGGPGISDAYYCRECCQQEKDRDGCPKIINLGSSKTDLFYERKKYG 106
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BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: A0A6P8C122_PUNGR (PHD finger-like domain-containing protein 5B n=2 Tax=Punica granatum TaxID=22663 RepID=A0A6P8C122_PUNGR)

HSP 1 Score: 131 bits (329), Expect = 1.470e-37
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D+VMCRK  G S+GR+C +CDG+CVICDSLVRP   AHVCDEC +G+ +  CV+C G   +DA  C EC Q EKDR+GCPKI+N+G  + D +++ K  G
Sbjct:   11 DLVMCRKQPGISIGRLCEKCDGKCVICDSLVRPCTLAHVCDECNFGSCMGRCVVCGGVGISDAYYCKECTQLEKDRDGCPKIVNLGSAKTDLFYERKKYG 110
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BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: A0A120K0Y0_9SACH (HBL093Wp n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A120K0Y0_9SACH)

HSP 1 Score: 130 bits (328), Expect = 1.650e-37
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAK 291
            D+VMC K+ G+ +GR+C RCDGRC ICDS VRP  K  +CD+C++G+  + C+IC  K T+DA  C+ECC+ EK R+GCPKILN+G  + DR+F+ +
Sbjct:    7 DLVMCLKLPGSHIGRLCERCDGRCPICDSNVRPFSKVRICDQCSFGSQANKCIICGSKGTSDAYYCWECCKLEKSRDGCPKILNVGSNKTDRHFEKR 103
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BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: L0AVK2_THEEQ (Uncharacterized protein n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L0AVK2_THEEQ)

HSP 1 Score: 130 bits (328), Expect = 1.970e-37
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D++MCRK  G ++GR+C +CDG+C ICDS VRPH+   +CDEC YG     CVIC G+  +DA  C ECCQ EKDR+GCPKI+N+G  + D +++ K  G
Sbjct:    8 DLIMCRKQPGIAIGRLCDKCDGKCPICDSYVRPHLLVRICDECNYGVNQGRCVICGGQGISDAYYCKECCQCEKDRDGCPKIVNLGSAKTDLFYERKKYG 107
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BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: A0A1U8BCD5_NELNU (PHD finger-like domain-containing protein 5B n=23 Tax=Viridiplantae TaxID=33090 RepID=A0A1U8BCD5_NELNU)

HSP 1 Score: 130 bits (327), Expect = 2.560e-37
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D++MCRK  G ++GR+C +CDG+CVICDSLVRP   A VCDEC YG+    CV+C G   +DA  C EC QQEKDR+GCPKI+N+G  R D +++ K  G
Sbjct:    7 DLIMCRKQPGIAIGRLCEKCDGKCVICDSLVRPCTLARVCDECNYGSFQGRCVVCGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSARTDLFYERKKYG 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: A0A813E2G0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E2G0_POLGL)

HSP 1 Score: 130 bits (327), Expect = 2.560e-37
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D++MCRK  G ++GR+C +CDG+CVICDS VRP   A VCDEC YG+    CVIC G   ADA  C ECCQ EKDR+GCPKI+N+G  + D +++ K  G
Sbjct:    7 DLIMCRKQCGIAIGRLCEKCDGKCVICDSYVRPSQLARVCDECNYGSYQGRCVICGGAGIADAFYCKECCQCEKDRDGCPKIVNLGSAKTDLFYERKKYG 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: A0A812T4P0_SYMPI (Hypothetical protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812T4P0_SYMPI)

HSP 1 Score: 130 bits (326), Expect = 3.630e-37
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D++MCRK  G ++GR+C +CDG+CVICDS VRP   A VCDEC YG+    CVIC G   +DA  C ECCQ EKDR+GCPKI+N+G  R D +++ K  G
Sbjct:    7 DLIMCRKQCGIAIGRLCEKCDGKCVICDSYVRPSQLARVCDECNYGSYQGRCVICGGAGISDAFYCKECCQCEKDRDGCPKIVNLGTARTDLFYERKKYG 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: A0A7S2HSQ3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HSQ3_9STRA)

HSP 1 Score: 130 bits (326), Expect = 3.630e-37
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D+VMCRK  G ++GR+C +CDG+CVICDS VRP+V   +CDEC YG+    CVIC G   +DA  C EC QQEKDR+GCPKI+N+G  + D +++ K  G
Sbjct:    7 DLVMCRKQPGIAIGRLCEKCDGKCVICDSYVRPNVLVRICDECNYGSYEGRCVICGGPGISDAYFCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYG 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: B9PQW9_TOXGV (Pre-mRNA-splicing factor, putative n=44 Tax=Eukaryota TaxID=2759 RepID=B9PQW9_TOXGV)

HSP 1 Score: 130 bits (326), Expect = 3.860e-37
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG 300
            D++MCRK  G ++GR+C +CDG+C ICDS VRPH    +CDEC YG+    CVIC G   +DA  C ECCQ EKDR+GCPKI+N+G  + D +++ K  G
Sbjct:    8 DLIMCRKQPGIAIGRLCEKCDGKCPICDSYVRPHTLVRICDECNYGSYQGRCVICGGPGISDAYYCKECCQMEKDRDGCPKIVNLGSAKTDLFYERKKYG 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Match: J3P943_GAET3 (PHD finger-like domain-containing protein 5A n=171 Tax=Pezizomycotina TaxID=147538 RepID=J3P943_GAET3)

HSP 1 Score: 129 bits (324), Expect = 6.890e-37
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 DMVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDSCVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKT 294
            D+VMCRK AG S+GR+C +CDG+C +CDS VRP     +CDEC++G   + CV+C G+  +DA  C+EC + EKDR+GCPKI+N+G  R D ++Q KT
Sbjct:    7 DLVMCRKQAGVSIGRLCDKCDGKCPVCDSYVRPTTLVRICDECSFGNYQNKCVVCGGEGISDAFYCFECTRLEKDRDGCPKIINLGSSRTDLFYQKKT 104
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82944.19379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2RJG3_9STRA1.270e-3755.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6P8C122_PUNGR1.470e-3756.00PHD finger-like domain-containing protein 5B n=2 T... [more]
A0A120K0Y0_9SACH1.650e-3753.61HBL093Wp n=1 Tax=Eremothecium sinecaudum TaxID=452... [more]
L0AVK2_THEEQ1.970e-3753.00Uncharacterized protein n=1 Tax=Theileria equi str... [more]
A0A1U8BCD5_NELNU2.560e-3756.00PHD finger-like domain-containing protein 5B n=23 ... [more]
A0A813E2G0_POLGL2.560e-3756.00Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812T4P0_SYMPI3.630e-3756.00Hypothetical protein n=3 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S2HSQ3_9STRA3.630e-3755.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B9PQW9_TOXGV3.860e-3753.00Pre-mRNA-splicing factor, putative n=44 Tax=Eukary... [more]
J3P943_GAET36.890e-3753.06PHD finger-like domain-containing protein 5A n=171... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82944contigM-pyrifera_M_contig82944:1..682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeApicomplexa
Seed ortholog score129.8
Seed ortholog evalue7e-28
Seed eggNOG ortholog5872.XP_004828717.1
KEGG koko:K12834
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PHF5-like protein
EggNOG OGs3KCCU@422676,3YAFG@5794,3Z5Q2@5863,KOG1705@1,KOG1705@2759
COG Functional cat.S
Best tax levelPiroplasmida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons3
Model size300
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82944.19379.1prot_M-pyrifera_M_contig82944.19379.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82944 1..679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.201596-CDS-M-pyrifera_M_contig82944:0..1061622816736.201596-CDS-M-pyrifera_M_contig82944:0..106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82944 1..106 -
1692278147.9939973-CDS-M-pyrifera_M_contig82944:0..1061692278147.9939973-CDS-M-pyrifera_M_contig82944:0..106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82944 1..106 -
1622816736.2156134-CDS-M-pyrifera_M_contig82944:347..5071622816736.2156134-CDS-M-pyrifera_M_contig82944:347..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82944 348..507 -
1692278148.0096614-CDS-M-pyrifera_M_contig82944:347..5071692278148.0096614-CDS-M-pyrifera_M_contig82944:347..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82944 348..507 -
1622816736.2280579-CDS-M-pyrifera_M_contig82944:648..6791622816736.2280579-CDS-M-pyrifera_M_contig82944:648..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82944 649..679 -
1692278148.020746-CDS-M-pyrifera_M_contig82944:648..6791692278148.020746-CDS-M-pyrifera_M_contig82944:648..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82944 649..679 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.2401497-UTR-M-pyrifera_M_contig82944:679..6821622816736.2401497-UTR-M-pyrifera_M_contig82944:679..682Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82944 680..682 -
1692278148.0322382-UTR-M-pyrifera_M_contig82944:679..6821692278148.0322382-UTR-M-pyrifera_M_contig82944:679..682Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82944 680..682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82944.19379.1

>prot_M-pyrifera_M_contig82944.19379.1 ID=prot_M-pyrifera_M_contig82944.19379.1|Name=mRNA_M-pyrifera_M_contig82944.19379.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MVMCRKIAGTSVGRVCSRCDGRCVICDSLVRPHVKAHVCDECAYGTGIDS
CVICHGKATADATICYECCQQEKDREGCPKILNMGKRRADRYFQAKTLG
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mRNA from alignment at M-pyrifera_M_contig82944:1..682-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82944.19379.1 ID=mRNA_M-pyrifera_M_contig82944.19379.1|Name=mRNA_M-pyrifera_M_contig82944.19379.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=682bp|location=Sequence derived from alignment at M-pyrifera_M_contig82944:1..682- (Macrocystis pyrifera P11B4 male)
GATATGGTCATGTGTAGGAAGATAGCAGGAACGAGTAAGAGGATTGTTCA
GGGGATGTTTTGGGTTGCTTGGGTGTTGGTGAGGGGATTTGGGTTCTTTG
TAGAGAAGAGTGCAAGTTATGATACCCAACATCCTCCCCAACGCTCCACC
TACACCCTATTTATCTCACTTGCAGGTGTTGGTAGGGTGTGTTCTCGATG
TGATGGAAGGTGCGTAATTTGTGATTCGTTGGTTCGGCCTCATGTCAAAG
CACATGTATGTGATGAATGTGCGTATGGAACTGGAATTGATTCTTGCGTC
ATCTGCCATGGAAAGGCAACTGCTGACGCGACTATGTAAGGGAGAACGAG
AGAGAGATTGAAATATCGCGAAGAAATGGGGGATGAGGGTTGAGGGATTG
GGGGTGAGAGGGAGGAGGATGGTGTTGGAGGATGGTGTTGGAATATGGGA
TTGATTGAAGTGGGGAAATCGGTTCATGGAGTTCCCTTCTTTTGCTGTTG
CCGACTTTTTTCCCTGCAAACCCTCTCTATTCCCATTCTCTCCTTCACTC
CAACCCATGTTTCCTTACCTCTGCAGTTGTTATGAGTGTTGTCAGCAAGA
AAAGGATAGAGAGGGTTGTCCAAAGATCCTAAATATGGGCAAGAGGAGAG
CAGACCGATACTTCCAAGCGAAGACGTTAGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82944:1..682-

>mRNA_M-pyrifera_M_contig82944.19379.1 ID=mRNA_M-pyrifera_M_contig82944.19379.1|Name=mRNA_M-pyrifera_M_contig82944.19379.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig82944:1..682- (Macrocystis pyrifera P11B4 male)
ATGGTCATGTGTAGGAAGATAGCAGGAACGAATGGTCATGTGTAGGAAGA
TAGCAGGAACGAGTGTTGGTAGGGTGTGTTCTCGATGTGATGGAAGGTGC
GTAATTTGTGATTCGTTGGTTCGGCCTCATGTCAAAGCACATGTATGTGA
TGAATGTGCGTATGGAACTGGAATTGATTCTTGCGTCATCTGCCATGGAA
AGGCAACTGCTGACGCGACTATGTGTTGGTAGGGTGTGTTCTCGATGTGA
TGGAAGGTGCGTAATTTGTGATTCGTTGGTTCGGCCTCATGTCAAAGCAC
ATGTATGTGATGAATGTGCGTATGGAACTGGAATTGATTCTTGCGTCATC
TGCCATGGAAAGGCAACTGCTGACGCGACTATTTGTTATGAGTGTTGTCA
GCAAGAAAAGGATAGAGAGGGTTGTCCAAAGATCCTAAATATGGGCAAGA
GGAGAGCAGACCGATACTTCCAAGCGAAGACGTTAGGATTGTTATGAGTG
TTGTCAGCAAGAAAAGGATAGAGAGGGTTGTCCAAAGATCCTAAATATGG
GCAAGAGGAGAGCAGACCGATACTTCCAAGCGAAGACGTTAGGA
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