mRNA_M-pyrifera_M_contig82932.19376.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82932.19376.1
Unique NamemRNA_M-pyrifera_M_contig82932.19376.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82932.19376.1 vs. uniprot
Match: A0A2E8D5B2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D5B2_9PLAN)

HSP 1 Score: 61.2 bits (147), Expect = 6.810e-10
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 DELAEIAKHEGWVTSMAFSPDGATLATAGGSSLLYRPG 114
            D+  +IAKHE WVTS+A+SPDGA LATAGG SL YRPG
Sbjct:   29 DQADKIAKHERWVTSLAYSPDGAMLATAGGQSLQYRPG 66
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BLAST of mRNA_M-pyrifera_M_contig82932.19376.1 vs. uniprot
Match: A0A3A0DSR5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0DSR5_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.600e-7
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   16 IAKHEGWVTSMAFSPDGATLATAGGSSLLYRPG 114
            IA H  WVT++AF+PDGATL T GG SLLYRPG
Sbjct:   40 IATHARWVTAVAFTPDGATLVTTGGESLLYRPG 72
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82932.19376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E8D5B2_9PLAN6.810e-1073.68Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A3A0DSR5_9BACT2.600e-772.73Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82932contigM-pyrifera_M_contig82932:790..903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816736.1063578-CDS-M-pyrifera_M_contig82932:789..9031622816736.1063578-CDS-M-pyrifera_M_contig82932:789..903Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82932 790..903 +
1692278147.940019-CDS-M-pyrifera_M_contig82932:789..9031692278147.940019-CDS-M-pyrifera_M_contig82932:789..903Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82932 790..903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82932.19376.1prot_M-pyrifera_M_contig82932.19376.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82932 790..903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82932.19376.1

>prot_M-pyrifera_M_contig82932.19376.1 ID=prot_M-pyrifera_M_contig82932.19376.1|Name=mRNA_M-pyrifera_M_contig82932.19376.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
DELAEIAKHEGWVTSMAFSPDGATLATAGGSSLLYRPG
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mRNA from alignment at M-pyrifera_M_contig82932:790..903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82932.19376.1 ID=mRNA_M-pyrifera_M_contig82932.19376.1|Name=mRNA_M-pyrifera_M_contig82932.19376.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig82932:790..903+ (Macrocystis pyrifera P11B4 male)
GACGAGCTGGCGGAGATCGCCAAGCACGAGGGTTGGGTCACCTCCATGGC
GTTCTCTCCCGACGGAGCAACGTTGGCCACCGCCGGCGGTTCGAGCCTGC
TCTATCGTCCCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82932:790..903+

>mRNA_M-pyrifera_M_contig82932.19376.1 ID=mRNA_M-pyrifera_M_contig82932.19376.1|Name=mRNA_M-pyrifera_M_contig82932.19376.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig82932:790..903+ (Macrocystis pyrifera P11B4 male)
GACGAGCTGGCGGAGATCGCCAAGCACGAGGGTTGGGTCACCTCCATGGC
GTTCTCTCCCGACGGAGCAACGTTGGCCACCGCCGGCGGTTCGAGCCTGC
TCTATCGTCCCGGCGACGAGCTGGCGGAGATCGCCAAGCACGAGGGTTGG
GTCACCTCCATGGCGTTCTCTCCCGACGGAGCAACGTTGGCCACCGCCGG
CGGTTCGAGCCTGCTCTATCGTCCCGGC
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