mRNA_M-pyrifera_M_contig82927.19374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82927.19374.1
Unique NamemRNA_M-pyrifera_M_contig82927.19374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: F0WUD0_9STRA (Uncharacterized protein AlNc14C270G9951 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WUD0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.840e-12
Identity = 28/48 (58.33%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            ECSN G CD  TGLC+C +GF G  C RT+CPNRC+GHG  ++ R +G
Sbjct:  106 ECSNKGICDRTTGLCKCFDGFEGSACQRTSCPNRCNGHGTCESIRELG 153
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: V9M5M6_9STRA (OCM1 (Fragment) n=1 Tax=Pythium anandrum TaxID=289606 RepID=V9M5M6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.550e-12
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            ECSN G CD  TG+C C +G+ G+ C RTTCPN+CSGHG  ++ R +G
Sbjct:   68 ECSNKGICDRTTGICTCFDGYEGNACQRTTCPNKCSGHGTCESIRELG 115
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: V9M541_PYTIN (OCM1 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=V9M541_PYTIN)

HSP 1 Score: 68.2 bits (165), Expect = 8.980e-12
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            EC N G CD  TGLC+C +G+ G  C RTTCPN+CSGHG  ++ R +G
Sbjct:   63 ECGNKGICDRTTGLCQCFDGYEGAGCRRTTCPNKCSGHGTCESLRELG 110
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: V9M556_9STRA (OCM1 (Fragment) n=1 Tax=Pythium prolatum TaxID=104971 RepID=V9M556_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.220e-11
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            ECSN G CD  TGLC C +G+ G  C RTTCPN+CSGHG  ++ R +G
Sbjct:   68 ECSNKGICDRTTGLCTCFDGYEGIACQRTTCPNKCSGHGTCESIRELG 115
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: A0A024G0I5_9STRA (Uncharacterized protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024G0I5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.240e-11
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            ECSN G CD  TGLC+C +GF G  C RT+CPN+C+GHG  ++ R +G
Sbjct:  158 ECSNKGICDRSTGLCKCFDGFEGSACQRTSCPNKCNGHGTCESLRELG 205
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: V9M548_9STRA (OCM1 (Fragment) n=1 Tax=Calycofera operculata TaxID=1971756 RepID=V9M548_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.140e-11
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            EC N G CD  +GLCEC +G+ G+ C RTTCPN+CSGHG   + + +G
Sbjct:   66 ECGNKGICDRTSGLCECFDGYEGNGCMRTTCPNKCSGHGVCQSIQQLG 113
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: V9M3Y0_9STRA (OCM1 (Fragment) n=1 Tax=Phytopythium sindhum TaxID=795340 RepID=V9M3Y0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.140e-11
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            EC+N G CD  +GLC C +G+ G+ CARTTCPN+C+GHG   + R +G
Sbjct:   60 ECANKGICDRASGLCTCFDGYEGNGCARTTCPNKCNGHGVCHSIRQLG 107
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: V9M5J8_PHYVE (OCM1 (Fragment) n=1 Tax=Phytopythium vexans TaxID=907947 RepID=V9M5J8_PHYVE)

HSP 1 Score: 65.1 bits (157), Expect = 1.090e-10
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG 150
            EC+N G CD  TGLC C +G+ G  C RTTCPN+CSGHG     R  G
Sbjct:   76 ECANKGVCDRATGLCSCFDGYEGAGCMRTTCPNKCSGHGVCQNIRQFG 123
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: V9M512_9STRA (OCM1 (Fragment) n=1 Tax=Phytopythium helicoides TaxID=126844 RepID=V9M512_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-10
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHG 123
            EC+N G CD  +GLC C +G+ G+ CARTTCPN+C+GHG
Sbjct:   65 ECANKGICDRASGLCTCFDGYEGNGCARTTCPNKCNGHG 103
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BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Match: A0A6H5K8W7_9PHAE (EGF-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8W7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.380e-9
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    7 ECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGR 126
            EC+N G CD  TG C C EG+ G  CAR +CPN CSGHGR
Sbjct:   91 ECANKGTCDRTTGECVCFEGYEGKGCARMSCPNDCSGHGR 130
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82927.19374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
F0WUD0_9STRA4.840e-1258.33Uncharacterized protein AlNc14C270G9951 n=1 Tax=Al... [more]
V9M5M6_9STRA6.550e-1256.25OCM1 (Fragment) n=1 Tax=Pythium anandrum TaxID=289... [more]
V9M541_PYTIN8.980e-1256.25OCM1 (Fragment) n=1 Tax=Pythium insidiosum TaxID=1... [more]
V9M556_9STRA1.220e-1158.33OCM1 (Fragment) n=1 Tax=Pythium prolatum TaxID=104... [more]
A0A024G0I5_9STRA1.240e-1156.25Uncharacterized protein n=3 Tax=Albugo candida Tax... [more]
V9M548_9STRA3.140e-1154.17OCM1 (Fragment) n=1 Tax=Calycofera operculata TaxI... [more]
V9M3Y0_9STRA3.140e-1154.17OCM1 (Fragment) n=1 Tax=Phytopythium sindhum TaxID... [more]
V9M5J8_PHYVE1.090e-1056.25OCM1 (Fragment) n=1 Tax=Phytopythium vexans TaxID=... [more]
V9M512_9STRA1.500e-1061.54OCM1 (Fragment) n=1 Tax=Phytopythium helicoides Ta... [more]
A0A6H5K8W7_9PHAE3.380e-962.50EGF-like domain-containing protein n=2 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82927contigM-pyrifera_M_contig82927:624..899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1e-09
Seed eggNOG ortholog653948.CCA25008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.9786386-CDS-M-pyrifera_M_contig82927:623..7031622816735.9786386-CDS-M-pyrifera_M_contig82927:623..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82927 624..703 -
1692278147.8605866-CDS-M-pyrifera_M_contig82927:623..7031692278147.8605866-CDS-M-pyrifera_M_contig82927:623..703Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82927 624..703 -
1622816735.9935045-CDS-M-pyrifera_M_contig82927:775..8991622816735.9935045-CDS-M-pyrifera_M_contig82927:775..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82927 776..899 -
1692278147.8720982-CDS-M-pyrifera_M_contig82927:775..8991692278147.8720982-CDS-M-pyrifera_M_contig82927:775..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82927 776..899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82927.19374.1prot_M-pyrifera_M_contig82927.19374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82927 624..899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82927.19374.1

>prot_M-pyrifera_M_contig82927.19374.1 ID=prot_M-pyrifera_M_contig82927.19374.1|Name=mRNA_M-pyrifera_M_contig82927.19374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
PTECSNSGYCDEHTGLCECTEGFTGHNCARTTCPNRCSGHGRWDADRLIG
CVCDVGWTGQDCSKRECP
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mRNA from alignment at M-pyrifera_M_contig82927:624..899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82927.19374.1 ID=mRNA_M-pyrifera_M_contig82927.19374.1|Name=mRNA_M-pyrifera_M_contig82927.19374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig82927:624..899- (Macrocystis pyrifera P11B4 male)
CCAACTGAATGTAGCAATTCTGGATACTGTGATGAGCATACTGGACTTTG
TGAATGCACAGAAGGCTTCACGGGACACAATTGTGCTCGAACCACCTGCC
CGAATCGATGCAGTGGTCATGGCCGTTGCATGACAATGAGGGAGGCCGCG
AATCGCAGAGACTACAAGCGATTGGTGTATGAAGCAAGGTATGAAGGATG
GGACGCTGATCGATTGATTGGATGTGTGTGTGATGTTGGATGGACAGGTC
AGGATTGTTCCAAACGAGAGTGTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82927:624..899-

>mRNA_M-pyrifera_M_contig82927.19374.1 ID=mRNA_M-pyrifera_M_contig82927.19374.1|Name=mRNA_M-pyrifera_M_contig82927.19374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig82927:624..899- (Macrocystis pyrifera P11B4 male)
CCAACTGAATGTAGCAATTCTGGATACTGTGATGAGCATACTGGACTTTG
TGAATGCACAGAAGGCTTCACGGGACACAATTGTGCTCGAACCACCTGCC
CGAATCGATGCAGTGGTCATGGCCCCAACTGAATGTAGCAATTCTGGATA
CTGTGATGAGCATACTGGACTTTGTGAATGCACAGAAGGCTTCACGGGAC
ACAATTGTGCTCGAACCACCTGCCCGAATCGATGCAGTGGTCATGGCCGA
TGGGACGCTGATCGATTGATTGGATGTGTGTGTGATGTTGGATGGACAGG
TCAGGATTGTTCCAAACGAGAGTGTCCAGATGGGACGCTGATCGATTGAT
TGGATGTGTGTGTGATGTTGGATGGACAGGTCAGGATTGTTCCAAACGAG
AGTGTCCA
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