mRNA_M-pyrifera_M_contig82920.19372.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82920.19372.1
Unique NamemRNA_M-pyrifera_M_contig82920.19372.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: A0A8H7ACL3_9EURO (MMS19 nucleotide excision repair protein n=1 Tax=Endocarpon pusillum TaxID=364733 RepID=A0A8H7ACL3_9EURO)

HSP 1 Score: 68.2 bits (165), Expect = 2.660e-10
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 1
Query:   79 PHQESAARALGEVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARF-SAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMAD--HLPTLVRGLLRLSTFP 489
            P  + AA + G +LAP        GA+VR L  Q+ F T   L+ A F S+ Q EE++    L AL+ ++  +P D+++ ELP LLPLLLQ+LD    R  +A +L  LA++   +PS + +  H+P+LVR L++ ++ P
Sbjct:  835 PVNKFAASSFGGLLAPDAVLSKTNGAQVRLLTPQKVFQTLAPLISAGFKSSSQGEEKE--NYLTALSGVIASIPSDIVVPELPTLLPLLLQSLDLSDQRVKIA-TLETLAVVTARSPSALEESGHIPSLVRRLVKTASIP 971          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: U1GA82_ENDPU (MMS19 nucleotide excision repair protein n=1 Tax=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) TaxID=1263415 RepID=U1GA82_ENDPU)

HSP 1 Score: 67.4 bits (163), Expect = 4.730e-10
Identity = 56/160 (35.00%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   34 EARALITFLVDLLAS-----PHQESAARALGEVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARF-SAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMAD--HLPTLVRGLLRLSTFP 489
            +  A++  L+ LL S     P  + AA + G +LAP        GA++R L  Q+ F T   L+ A F S+ Q +E++    L AL+ ++  +P D+++ ELP LLPLLLQ+LD    R  +A +L  LA++   +PS + +  H+P+LVR L++ ++ P
Sbjct:  534 DTNAILRDLLSLLDSSKHPLPVNKFAASSFGGLLAPDAVLSKTNGAQIRLLAPQKVFQTLAPLISAGFKSSSQGDEKE--NYLTALSGVIASIPSDIVVPELPTLLPLLLQSLDLSDQRVKIA-TLETLAVVTARSPSALEESGHIPSLVRRLVKTASIP 690          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: W9Y646_9EURO (MMS19 nucleotide excision repair protein n=1 Tax=Capronia epimyces CBS 606.96 TaxID=1182542 RepID=W9Y646_9EURO)

HSP 1 Score: 65.1 bits (157), Expect = 3.110e-9
Identity = 56/154 (36.36%), Postives = 86/154 (55.84%), Query Frame = 1
Query:   49 ITFLVDLLAS---PHQESAARALG--EVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARFSAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMAD--HLPTLVRGLLRLSTFP 489
            +T LVDLL     P + S   A+G   +L+P         A++R L  QR F     L+  RF A Q+   ++   L AL+ +L  VP D+++ ELP LLPLLLQ+LD    + V  A+L  LA++  + PS + +  H+P LV+ L++++T P
Sbjct:  806 LTSLVDLLDENQHPREVSRKAAMGFATILSPDDVLSKKNAAEIRLLAPQRVFQILTPLISERFKASQSPS-EKENYLIALSGILASVPSDIVMPELPTLLPLLLQSLDI-TDQTVKVATLETLAVVISNNPSALEESGHIPALVKRLIKVATVP 957          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: A0A0D1YRB6_9EURO (MMS19 nucleotide excision repair protein n=3 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1YRB6_9EURO)

HSP 1 Score: 64.7 bits (156), Expect = 4.230e-9
Identity = 57/154 (37.01%), Postives = 85/154 (55.19%), Query Frame = 1
Query:   49 ITFLVDLLAS---PHQESAARALG--EVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARFSAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMAD--HLPTLVRGLLRLSTFP 489
            +T LVDLL     P   S   A+G   +LAP         A++R L  QR F     L+  RF A Q    ++   L +L+ +L HVP D+++ ELP LLPLLLQ+LD    +AV  A+L  LA++  + P+ + D  H+P LV+ L+ +++ P
Sbjct:  803 LTSLVDLLDENRYPRDVSRRAAMGFATLLAPDDVLSKQNAAQIRLLAPQRVFQVLTPLISERFRASQ-NPSEKEHYLISLSGVLAHVPSDIVMPELPTLLPLLLQSLDVAD-QAVKVATLETLAVVISNNPTALEDSGHIPALVKRLVAVASVP 954          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: A0A0D2X5I0_CAPO3 (MMS19 nucleotide excision repair protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X5I0_CAPO3)

HSP 1 Score: 63.9 bits (154), Expect = 7.820e-9
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  154 AKVRRLYRQRYFCTTKALLLARFSAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMADHLPTLVRGLLRLSTFP 489
            A  R +Y+QR F +  AL++  ++A   E +Q    L AL+ +L +VP  +LL ELP LLPLL Q+L       +  +++  + LL   AP+ +A H PTL++ ++ LST P
Sbjct:  879 ANFRIMYKQRLFTSKSALIVQGYAATDDEHKQ--FYLTALSHMLQNVPKQVLLTELPSLLPLLFQSLSHANV-GLRLSTINSVYLLLFDAPALLASHTPTLIKHMMALSTSP 987          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: A0A8J8VYZ6_9EURO (MMS19 nucleotide excision repair protein n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8VYZ6_9EURO)

HSP 1 Score: 61.6 bits (148), Expect = 4.930e-8
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   46 LITFLVDLLASPHQE---SAARALGEVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARF---------SAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALD--GGQSRAVVAASLGCLALLARSAPSTMAD---HLPTLVRGLLR 474
            ++T L+ LL+SP  +   S AR    +L       A  GA +R L +QR F T   ++ AR            P   +  +   LAALA +L  +P DL+L ELP LLPLLLQ+LD    +S AV +A+L  LA++ R       D   H+ +LV  LLR
Sbjct:  804 VLTSLLRLLSSPDVQTSVSTARGFSILLGEDDVLSAANGASIRLLSKQRVFTTVVPIIAARIREVNVAGSEGLPTTADHIKPAHLAALAGILSTIPTDLVLTELPTLLPLLLQSLDLQNSESVAVRSATLDTLAVIIRDNGVAAIDKCGHVHSLVTRLLR 963          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: A0A0D2CIC3_9EURO (MMS19 nucleotide excision repair protein n=2 Tax=Phialophora americana TaxID=5601 RepID=A0A0D2CIC3_9EURO)

HSP 1 Score: 61.6 bits (148), Expect = 4.930e-8
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 1
Query:   58 LVDLLASPHQ------ESAARALGEVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARFSAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMAD--HLPTLVRGLLRLST 483
            LV+LL SP Q      + AA     +L+P        GA++R L  QR F T   L+  +F    A   ++   L AL+ +L  VP ++++ ELP LLPLLLQ+LD    + V  A+L  LA++  S PS + D  H+P LV+ L+ ++T
Sbjct:  813 LVELL-SPSQYPRSVSQKAALGFATILSPDDILSKENGAQIRLLVPQRVFQTLTPLIAEKFRTSNAP-LEKENYLIALSGILASVPSEIVMPELPTLLPLLLQSLDI-TDQTVKVATLETLAVVISSNPSALVDSGHIPALVKRLITVAT 959          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: A0A0D1ZBW8_EXOME (MMS19 nucleotide excision repair protein n=2 Tax=Exophiala mesophila TaxID=212818 RepID=A0A0D1ZBW8_EXOME)

HSP 1 Score: 61.2 bits (147), Expect = 6.700e-8
Identity = 59/152 (38.82%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   58 LVDLLAS---PHQESAARALG--EVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARF-SAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMAD--HLPTLVRGLLRLSTFP 489
            LVDLL     P   S   A+G   +LAP         A++R L  QR F T   L+  RF S+  A E++    L AL+ +L +VP D+++ ELP LLPLLLQ+LD    + V  A+L  LA++  S P  + +  H+P LV+ LL ++T P
Sbjct:  811 LVDLLDQSTYPVDVSKKAAMGFVSILAPDDVLSKTNDAQIRLLAPQRVFQTLTPLIAERFRSSSSAAEKE--NYLVALSGILTNVPSDIVMPELPTLLPLLLQSLDI-TDQMVKIATLETLAVVISSNPKALEESGHIPALVKRLLAVATVP 959          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: W9X205_9EURO (MMS19 nucleotide excision repair protein n=2 Tax=Cladophialophora TaxID=82105 RepID=W9X205_9EURO)

HSP 1 Score: 61.2 bits (147), Expect = 6.700e-8
Identity = 54/152 (35.53%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   49 ITFLVDLLAS---PHQES--AARALGEVLAPGGGCLAGAGAKVRRLYRQRYFCTTKALLLARFSAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMAD--HLPTLVRGLLRLST 483
            +T LV+LL S   P+Q S  AAR    +LA         GA++R L  QR F T   ++  +F   Q+   ++   L A++ ++  VP ++++ ELP LLPLLLQ+LD    + V  A+LG LA++  + PS + +  H+P LV+ L+ ++T
Sbjct:  810 LTNLVELLDSRQYPYQVSQRAARGFATILASDDILSKENGAQIRLLAPQRVFQTLTPMISDKFKTSQSPF-EKENFLVAMSGIMGSVPSEIVMPELPTLLPLLLQSLDIAD-QTVKLATLGTLAVVISNNPSALEESGHIPALVKRLIAVAT 959          
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Match: UPI000A2A5EC9 (MMS19 nucleotide excision repair protein homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A5EC9)

HSP 1 Score: 60.8 bits (146), Expect = 9.080e-8
Identity = 44/112 (39.29%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  154 AKVRRLYRQRYFCTTKALLLARF-SAPQAEERQRSGVLAALAQLLLHVPHDLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMADHLPTLVRGLLRLSTF 486
            A +R +YRQR+F  T  LLLA F SAP   +      L AL+ LL  +P  +L+ E+P+L+PLL+Q+L   Q+ +++ +SL  L  L   AP  +   + ++V  LLRL  F
Sbjct:  850 ANIRIMYRQRFFMETLPLLLAGFQSAPTVHKH---NYLTALSHLLRWIPKQVLMSEIPNLMPLLIQSLSHDQA-SLLLSSLQTLYSLVFDAPEAVTRQITSIVPNLLRLVKF 957          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82920.19372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7ACL3_9EURO2.660e-1037.86MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
U1GA82_ENDPU4.730e-1035.00MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
W9Y646_9EURO3.110e-936.36MMS19 nucleotide excision repair protein n=1 Tax=C... [more]
A0A0D1YRB6_9EURO4.230e-937.01MMS19 nucleotide excision repair protein n=3 Tax=E... [more]
A0A0D2X5I0_CAPO37.820e-937.50MMS19 nucleotide excision repair protein n=1 Tax=C... [more]
A0A8J8VYZ6_9EURO4.930e-836.88MMS19 nucleotide excision repair protein n=1 Tax=P... [more]
A0A0D2CIC3_9EURO4.930e-836.67MMS19 nucleotide excision repair protein n=2 Tax=P... [more]
A0A0D1ZBW8_EXOME6.700e-838.82MMS19 nucleotide excision repair protein n=2 Tax=E... [more]
W9X205_9EURO6.700e-835.53MMS19 nucleotide excision repair protein n=2 Tax=C... [more]
UPI000A2A5EC99.080e-839.29MMS19 nucleotide excision repair protein homolog n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82920contigM-pyrifera_M_contig82920:164..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score68.2
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog364733.XP_007805812.1
KEGG koko:K15075
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0006807,GO:0008150,GO:0008152,GO:0010467,GO:0019538,GO:0031618,GO:0031974,GO:0031981,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051604,GO:0070013,GO:0071704,GO:0097428,GO:0098687,GO:0106035,GO:1901564
EggNOG free text desc.Dos2-interacting transcription regulator of RNA-Pol-II
EggNOG OGs20B1T@147545,38FX1@33154,3MQHA@451870,3NU16@4751,3QQ7Y@4890,KOG1967@1,KOG1967@2759
COG Functional cat.KL
Best tax levelChaetothyriomycetidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.903258-CDS-M-pyrifera_M_contig82920:163..6521622816735.903258-CDS-M-pyrifera_M_contig82920:163..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82920 164..652 -
1692278147.8242428-CDS-M-pyrifera_M_contig82920:163..6521692278147.8242428-CDS-M-pyrifera_M_contig82920:163..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82920 164..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82920.19372.1prot_M-pyrifera_M_contig82920.19372.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82920 164..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82920.19372.1

>prot_M-pyrifera_M_contig82920.19372.1 ID=prot_M-pyrifera_M_contig82920.19372.1|Name=mRNA_M-pyrifera_M_contig82920.19372.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
LAQALSAAGRAEARALITFLVDLLASPHQESAARALGEVLAPGGGCLAGA
GAKVRRLYRQRYFCTTKALLLARFSAPQAEERQRSGVLAALAQLLLHVPH
DLLLMELPDLLPLLLQALDGGQSRAVVAASLGCLALLARSAPSTMADHLP
TLVRGLLRLSTFP
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mRNA from alignment at M-pyrifera_M_contig82920:164..652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82920.19372.1 ID=mRNA_M-pyrifera_M_contig82920.19372.1|Name=mRNA_M-pyrifera_M_contig82920.19372.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig82920:164..652- (Macrocystis pyrifera P11B4 male)
CTCGCACAAGCACTCTCCGCCGCAGGCAGAGCAGAGGCTCGAGCACTCAT CACCTTTCTCGTCGACCTCTTGGCCTCTCCCCACCAGGAGTCTGCAGCGC GAGCTCTGGGCGAGGTTCTCGCGCCAGGGGGAGGATGTCTGGCAGGCGCA GGCGCTAAGGTTCGCCGTCTCTATCGCCAGCGTTACTTCTGCACCACAAA GGCTCTTCTCCTCGCACGATTCTCTGCGCCACAAGCAGAAGAGCGCCAGC GGTCTGGCGTGCTGGCGGCCCTTGCACAGCTGCTGCTGCATGTGCCACAC GACCTGCTGCTTATGGAGCTGCCTGACCTCCTTCCTCTCTTGCTCCAGGC CCTCGACGGTGGCCAGAGCCGCGCGGTGGTCGCCGCCAGCCTCGGATGTC TGGCGCTGCTCGCGCGCTCTGCGCCGTCCACCATGGCAGACCATCTGCCC ACCCTTGTGCGTGGACTTCTTCGCCTTTCCACCTTCCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82920:164..652-

>mRNA_M-pyrifera_M_contig82920.19372.1 ID=mRNA_M-pyrifera_M_contig82920.19372.1|Name=mRNA_M-pyrifera_M_contig82920.19372.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig82920:164..652- (Macrocystis pyrifera P11B4 male)
CTCGCACAAGCACTCTCCGCCGCAGGCAGAGCAGAGGCTCGAGCACTCAT
CACCTTTCTCGTCGACCTCTTGGCCTCTCCCCACCAGGAGTCTGCAGCGC
GAGCTCTGGGCGAGGTTCTCGCGCCAGGGGGAGGATGTCTGGCAGGCGCA
GGCGCTAAGGTTCGCCGTCTCTATCGCCAGCGTTACTTCTGCACCACAAA
GGCTCTTCTCCTCGCACGATTCTCTGCGCCACAAGCAGAAGAGCGCCAGC
GGTCTGGCGTGCTGGCGGCCCTTGCACAGCTGCTGCTGCATGTGCCACAC
GACCTGCTGCTTATGGAGCTGCCTGACCTCCTTCCTCTCTTGCTCCAGGC
CCTCGACGGTGGCCAGAGCCGCGCGGTGGTCGCCGCCAGCCTCGGATGTC
TGGCGCTGCTCGCGCGCTCTGCGCCGTCCACCATGGCAGACCATCTGCCC
ACCCTTGTGCGTGGACTTCTTCGCCTTTCCACCTTCCCTCTCGCACAAGC
ACTCTCCGCCGCAGGCAGAGCAGAGGCTCGAGCACTCATCACCTTTCTCG
TCGACCTCTTGGCCTCTCCCCACCAGGAGTCTGCAGCGCGAGCTCTGGGC
GAGGTTCTCGCGCCAGGGGGAGGATGTCTGGCAGGCGCAGGCGCTAAGGT
TCGCCGTCTCTATCGCCAGCGTTACTTCTGCACCACAAAGGCTCTTCTCC
TCGCACGATTCTCTGCGCCACAAGCAGAAGAGCGCCAGCGGTCTGGCGTG
CTGGCGGCCCTTGCACAGCTGCTGCTGCATGTGCCACACGACCTGCTGCT
TATGGAGCTGCCTGACCTCCTTCCTCTCTTGCTCCAGGCCCTCGACGGTG
GCCAGAGCCGCGCGGTGGTCGCCGCCAGCCTCGGATGTCTGGCGCTGCTC
GCGCGCTCTGCGCCGTCCACCATGGCAGACCATCTGCCCACCCTTGTGCG
TGGACTTCTTCGCCTTTCCACCTTCCCT
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