mRNA_M-pyrifera_M_contig82884.19369.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82884.19369.1
Unique NamemRNA_M-pyrifera_M_contig82884.19369.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A2D9C6B7_9BACT (3-dehydroquinate synthase n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C6B7_9BACT)

HSP 1 Score: 262 bits (669), Expect = 4.310e-83
Identity = 141/244 (57.79%), Postives = 170/244 (69.67%), Query Frame = 1
Query:    4 DGTLLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVG-----HAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCGLYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIRA 720
            DG L KN+VGAFHQP +V AD A+LDSL+ RQ R GL+EC+KHA IC +V      HAGL  W + ++  I + DR T+  LV RNVALKASVVA DE ESP+A  GGRMLLNFGHTFGHAIET+ GV +        D+P  GL+HGEAV LGM  AC  A ++G+C   +G  L  ML + GL  + EGLPGSD I+ RMGHDKKA G S+RVILP G+G C+IV DA I A+ AG+  IRA
Sbjct:  155 DGELYKNMVGAFHQPTMVVADTALLDSLDARQRRCGLAECVKHAMICQSVPDEDETHAGLLGWMQARLGAISAFDRETIDELVERNVALKASVVAGDERESPEARTGGRMLLNFGHTFGHAIETLDGVRAG-------DEP--GLFHGEAVGLGMCCACAAAVSLGLCDDSVGASLRAMLDAVGLPTRVEGLPGSDVIVERMGHDKKAAGGSLRVILPEGLGRCSIVTDADIGAIGAGVGVIRA 389          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A2A4RFP4_9BACT (3-dehydroquinate synthase n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RFP4_9BACT)

HSP 1 Score: 237 bits (605), Expect = 2.050e-73
Identity = 130/243 (53.50%), Postives = 162/243 (66.67%), Query Frame = 1
Query:    1 DDGTLLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVG--HAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCG-LYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIRA 720
            D+ T+ KNLVGAFHQP  V AD+ VL SL+ R  R+GL+EC+KH  IC T+G  H GL DW    +  I+S D   +  LVARNVALKA+V+  DEHES DA AGGRMLLNFGHTFGHAIET+AG+        + ++P+   L+HGEAVALGM+AAC  +   G C   I  +L  +L++ GL  +   LP + EI+ RM  DKK  G S+RVILP G G CTIVD     A+ AGID+IRA
Sbjct:  157 DEPTIYKNLVGAFHQPSRVIADMNVLGSLDARYRRAGLAECVKHGMICSTIGNGHEGLMDWMIAHLDGIQSFDSPIMEELVARNVALKATVIMGDEHESTDAKAGGRMLLNFGHTFGHAIETLAGLSP------DVNNPDLAPLHHGEAVALGMVAACHSSVAAGRCDASIVQELENILQTIGLPTRVADLPQTGEILERMMRDKKTAGGSLRVILPIGRGECTIVDSPKTSAIEAGIDSIRA 393          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A812Y1A1_9DINO (AroB protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Y1A1_9DINO)

HSP 1 Score: 222 bits (566), Expect = 6.560e-63
Identity = 128/236 (54.24%), Postives = 152/236 (64.41%), Query Frame = 1
Query:   13 LLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCG-LYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIR 717
            LLKNLVGAF QP LV AD+ VLDSLE R  RSGL+ECIKH  I     H  L DW    +  I + +   +  LV+RNVALKASVVA DE E    + GGRMLLNFGHTFGHAIETIA +        + D+P+   L+HGEAVALGM+AACR A++    +P +GD+LV +L   GL     GLP +D++I RMGHDKKA   SVRVI P   G C +  DA    L AG DAIR
Sbjct: 1133 LLKNLVGAFWQPDLVIADIDVLDSLEARYRRSGLAECIKHGCIAQGFNHPELMDWMIANLDQIITFEPQVVSELVSRNVALKASVVAADEREDTSKL-GGRMLLNFGHTFGHAIETIAHLSP------KKDNPSLAPLHHGEAVALGMVAACRAAESAHNLSPTVGDELVSLLDRVGLPSCVSGLPSNDDLIERMGHDKKATAGSVRVIYPIQRGKCEVFADADPSHLAAGFDAIR 1361          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A7Y5W8G6_9BACT (3-dehydroquinate synthase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5W8G6_9BACT)

HSP 1 Score: 209 bits (531), Expect = 2.450e-62
Identity = 121/240 (50.42%), Postives = 149/240 (62.08%), Query Frame = 1
Query:    7 GTLLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCG--LYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIRA 720
            GT+LKN++G FHQP  V ADV  L SL+ R+ R+GL EC+KHA I    G AGL  W  + M  I   D STL+ LVARNVALKA +V  D +E+  + AGGR LLN GHTFGHAIET+ GV  +G          CG  + HGEAVALG+IAA   A +MG   P + D +   +R+AGL D+A GL    ++I RMGHDKK  G  +RV+LP   G   +V     EAL AG  AIRA
Sbjct:  164 GTILKNMIGTFHQPAAVVADVRALASLDDREFRAGLGECLKHAMIGADAGDAGLGAWMNNAMEQIAQRDESTLVELVARNVALKARIVEADPYET--SAAGGRALLNLGHTFGHAIETLGGVGVIG----------CGPGILHGEAVALGLIAATATAASMGRVPPAMIDAVRERVRAAGLADRATGLGSDQDLIDRMGHDKKVRGGVLRVVLPGDEGRAGVVAGPTHEALAAGWAAIRA 391          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A3M2CQN4_9BACT (3-dehydroquinate synthase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CQN4_9BACT)

HSP 1 Score: 208 bits (530), Expect = 3.560e-62
Identity = 116/241 (48.13%), Postives = 147/241 (61.00%), Query Frame = 1
Query:   13 LLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPN------CGLYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIR 717
            LLKN VGAFHQP  V AD  VL SL  R  R+GL+EC+KHA I   +  A L   TR  M  + +G+      L+ R+VALK  VV +DE ES   + G RMLLN GHTFGHAIETI  +            PN        L+HGEAV LG++AACRCA+ +GMC P +GD+++G+L   GL      LP +DE+ +RMG DKKA G  +R++LP G G C +V +    A+ AGIDAIR
Sbjct:  162 LLKNFVGAFHQPLTVAADTRVLMSLPDRHRRAGLAECVKHAMIALGITGADLMSETRAAMPGVLAGEEDAYGRLIERSVALKGEVVRRDERESIAGLGGVRMLLNLGHTFGHAIETIPNL-----------SPNPAYPELAPLHHGEAVGLGLLAACRCAERLGMCEPGVGDEVLGILDMIGLPSTVRDLPDTDEVRSRMGADKKAAGGKLRLVLPEGRGRCRVVTNPDETAVAAGIDAIR 391          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: UPI001ACEEF65 (3-dehydroquinate synthase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001ACEEF65)

HSP 1 Score: 207 bits (526), Expect = 1.740e-61
Identity = 115/237 (48.52%), Postives = 148/237 (62.45%), Query Frame = 1
Query:   13 LLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVG--HAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCGLYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIR 717
            L KNLVGAFHQP+LV  D + L SL PR   +GL+ECIKHA IC +V     GL DWTR  +   RS D+  L  L+ARNVALKA VV +DE E     AGGR  LN GHTF HA+ET+ G+    G  ++       L HGEAVALG+++A R A+ +G+C  ++ + +  ML +AGL     GLP +  ++ RM HDKKA G   R++LP G+G   IV D P  A+ AG DA+R
Sbjct:  170 LAKNLVGAFHQPRLVVIDTSTLRSLSPRHLSAGLAECIKHAMICGSVPGPDPGLTDWTRANVGPARSLDQGVLGELIARNVALKARVVERDEREEAADEAGGRAFLNLGHTFAHAVETLGGLGLPDGRPLD-------LLHGEAVALGLVSAARTARVLGLCDLEVEERVRQMLEAAGLPSAVVGLPEARALLTRMSHDKKARGGVRRLVLPVGVGRVRIVADPPEGAVEAGWDAVR 399          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A2E2NBU1_9BACT (3-dehydroquinate synthase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2NBU1_9BACT)

HSP 1 Score: 204 bits (520), Expect = 2.560e-60
Identity = 118/237 (49.79%), Postives = 144/237 (60.76%), Query Frame = 1
Query:   13 LLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHES-PDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCGLYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIRA 720
            L+KN +GAFHQP  V ADV  L+SL  R  R GL+EC KHA +    G   L  WTR Q   I   D  TL ALVAR+VALKA VVA DE E+ PD   GGR  LN GHTF HAIETI G+   G      D  N  L HGEAVA+G++AA   A   G+C P + D +   L +  L     GLP    ++  M HDKKA+G++ R+ILPT +GS  +VD AP+EA+ AG DA+RA
Sbjct:  197 LMKNAIGAFHQPAAVFADVETLESLTDRDFRCGLAECYKHAMLASDWGDPDLLAWTRSQRAAIMGRDAETLAALVARSVALKARVVADDERETRPD---GGRATLNLGHTFAHAIETIPGLTPDG------DPQNAPLRHGEAVAIGLVAATATAVRAGLCDPVVLDHVRADLNAFELPTSVGGLPDHATLLQTMSHDKKAVGAAPRLILPTSLGSVRVVDTAPVEAIAAGWDAVRA 424          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A7Y5S7I6_9BACT (3-dehydroquinate synthase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5S7I6_9BACT)

HSP 1 Score: 200 bits (508), Expect = 6.250e-59
Identity = 109/239 (45.61%), Postives = 148/239 (61.92%), Query Frame = 1
Query:    4 DGTLLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCGLYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIRA 720
            DG+L KNLVGAFHQP+LV AD ++L SL  RQ R+GL+EC+KHA +    G   L  W       I + + ++L  LVARNVA+KA VVA DE E  ++ AGGR LLN GHTFGHAIET+  +   GG     D P   L+HGEAVA+G +AA   A  + + +  +   +  +L   GL  K +GLP  + ++  MGHDKK  G  +R++LP   G+C +VD+     ++A ID+IRA
Sbjct:  156 DGSLKKNLVGAFHQPRLVVADASLLSSLPDRQLRAGLAECVKHALLSSEFGDPSLLGWVETNASAILAREDASLTELVARNVAIKARVVAGDEREEAESAAGGRALLNLGHTFGHAIETLPELSPAGGAG---DAP---LHHGEAVAIGTMAALDAAARLKLASAALRGRVGALLSRLGLPTKVKGLPSGERVLELMGHDKKVQGGVLRLVLPCDGGTCKVVDNPDRAVVLAAIDSIRA 388          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A7C5SIM6_9BACT (3-dehydroquinate synthase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5SIM6_9BACT)

HSP 1 Score: 199 bits (506), Expect = 1.490e-58
Identity = 115/239 (48.12%), Postives = 142/239 (59.41%), Query Frame = 1
Query:    4 DGTLLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCGLYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIRA 720
            DG+LLKN+ GAFHQP  V ADV+ L SL+ R  R+GL+ECIKH  I      AGL DWTRD M  I +     L+ L+ARNVA+KA VVA D  E  D   GGR LLN GHT+ HAIETI G+   GG           L HGEAVALG++AA  C+++MG         + G++   GL  +  GLP    +  RM HDKK  G  +R+ L  G+G   +V D PIEA+ AG  AIRA
Sbjct:  169 DGSLLKNMAGAFHQPAAVLADVSALVSLDERTFRAGLAECIKHGMIAADWSDAGLLDWTRDSMDRILARQPGVLVDLIARNVAVKARVVAADVREQSDT--GGRALLNLGHTYAHAIETIDGLAPDGGP----------LLHGEAVALGLVAAAECSRSMGRLGASDVLAVRGIVEQCGLPSRISGLPDDGTLRDRMMHDKKTAGGRLRLTLFRGLGRAELVSDPPIEAVGAGWSAIRA 395          
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Match: A0A3M2BIM7_9BACT (3-dehydroquinate synthase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BIM7_9BACT)

HSP 1 Score: 195 bits (496), Expect = 3.680e-57
Identity = 115/237 (48.52%), Postives = 144/237 (60.76%), Query Frame = 1
Query:    4 DGTLLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDTVGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDAVAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCGLYHGEAVALGMIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGHDKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAI 714
            DG LLKN  GAFHQP+LV A +  LDSL  RQ R+GL+ECIKHA I    G   L +WT  ++ +I   +  TL  LVARNVA+KA +V  DE E+    +GGR LLN GHTF HAIET+ GV   G      D     L HGEAVALG+IAA   A         I D +  ++  AGL     GLP + EI+ RM  DKKAI  ++R+ILP  +G   +V+  PI+A++AGIDAI
Sbjct:  155 DGALLKNYSGAFHQPELVVASMDTLDSLPQRQFRAGLAECIKHAMISADWGDGDLWEWTEARLDSILDREPETLTELVARNVAVKARLVEADERET--LASGGRSLLNLGHTFAHAIETLPGVFPDG------DAGRTSLLHGEAVALGLIAASEAAVFAKFADRSILDRVRSVVSRAGLPTTVRGLPPAKEILTRMAQDKKAIAGTMRLILPVELGRSRVVESPPIDAVLAGIDAI 383          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82884.19369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9C6B7_9BACT4.310e-8357.793-dehydroquinate synthase n=2 Tax=Phycisphaerae Ta... [more]
A0A2A4RFP4_9BACT2.050e-7353.503-dehydroquinate synthase n=1 Tax=bacterium TaxID=... [more]
A0A812Y1A1_9DINO6.560e-6354.24AroB protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A7Y5W8G6_9BACT2.450e-6250.423-dehydroquinate synthase n=1 Tax=Phycisphaerales ... [more]
A0A3M2CQN4_9BACT3.560e-6248.133-dehydroquinate synthase n=1 Tax=Planctomycetes b... [more]
UPI001ACEEF651.740e-6148.523-dehydroquinate synthase n=1 Tax=Phycisphaerales ... [more]
A0A2E2NBU1_9BACT2.560e-6049.793-dehydroquinate synthase n=1 Tax=Phycisphaerae ba... [more]
A0A7Y5S7I6_9BACT6.250e-5945.613-dehydroquinate synthase n=1 Tax=Phycisphaerales ... [more]
A0A7C5SIM6_9BACT1.490e-5848.123-dehydroquinate synthase n=1 Tax=Phycisphaerales ... [more]
A0A3M2BIM7_9BACT3.680e-5748.523-dehydroquinate synthase n=1 Tax=Planctomycetes b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82884contigM-pyrifera_M_contig82884:5..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score142.9
Seed ortholog evalue2e-31
Seed eggNOG ortholog391600.ABRU01000047_gene2339
Preferred namearoB
KEGG rclassRC00002,RC00078,RC00847
KEGG koko:K01735,ko:K13829
KEGG ReactionR02412,R03083
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003856,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009423,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016838,GO:0019438,GO:0019752,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046417,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0051287,GO:0070403,GO:0071704,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
EggNOG OGs1MUBK@1224,2KFPW@204458,2TRDA@28211,COG0337@1,COG0337@2
EC2.7.1.71,4.2.3.4
COG Functional cat.E
BiGG ReactioniAF1260.b3389,iBWG_1329.BWG_3080,iECDH10B_1368.ECDH10B_3564,iECDH1ME8569_1439.ECDH1ME8569_3268,iECNA114_1301.ECNA114_3486,iEcDH1_1363.EcDH1_0324,iIT341.HP0283,iJO1366.b3389,iJR904.b3389,iY75_1357.Y75_RS20275
Best tax levelCaulobacterales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size723
Cds size723
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.777802-CDS-M-pyrifera_M_contig82884:4..7271622816735.777802-CDS-M-pyrifera_M_contig82884:4..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82884 5..727 +
1692278147.754687-CDS-M-pyrifera_M_contig82884:4..7271692278147.754687-CDS-M-pyrifera_M_contig82884:4..727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82884 5..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82884.19369.1prot_M-pyrifera_M_contig82884.19369.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82884 5..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82884.19369.1

>prot_M-pyrifera_M_contig82884.19369.1 ID=prot_M-pyrifera_M_contig82884.19369.1|Name=mRNA_M-pyrifera_M_contig82884.19369.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=241bp
DDGTLLKNLVGAFHQPKLVCADVAVLDSLEPRQTRSGLSECIKHAQICDT
VGHAGLADWTRDQMHTIRSGDRSTLIALVARNVALKASVVAKDEHESPDA
VAGGRMLLNFGHTFGHAIETIAGVCSVGGEQIEYDDPNCGLYHGEAVALG
MIAACRCAQTMGMCAPQIGDDLVGMLRSAGLGDKAEGLPGSDEIIARMGH
DKKAIGSSVRVILPTGIGSCTIVDDAPIEALIAGIDAIRA*
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mRNA from alignment at M-pyrifera_M_contig82884:5..727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82884.19369.1 ID=mRNA_M-pyrifera_M_contig82884.19369.1|Name=mRNA_M-pyrifera_M_contig82884.19369.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=723bp|location=Sequence derived from alignment at M-pyrifera_M_contig82884:5..727+ (Macrocystis pyrifera P11B4 male)
GACGATGGCACGCTCTTGAAGAATCTCGTCGGCGCGTTCCATCAACCCAA GCTTGTCTGCGCCGATGTCGCGGTGCTCGACTCGCTTGAGCCGCGCCAGA CGCGATCTGGACTCAGCGAGTGCATCAAGCACGCACAGATCTGCGACACT GTGGGACACGCTGGACTCGCAGACTGGACACGCGATCAGATGCACACGAT TCGCAGCGGGGATCGCTCGACACTCATCGCGCTCGTCGCTCGCAATGTGG CGCTCAAAGCTTCTGTCGTCGCGAAAGACGAGCACGAGAGTCCCGATGCA GTCGCTGGGGGTCGCATGCTGCTGAACTTCGGACACACCTTCGGTCACGC GATCGAGACAATCGCAGGCGTGTGCAGCGTAGGGGGGGAGCAAATCGAGT ATGACGATCCCAACTGCGGTCTCTATCACGGCGAAGCAGTGGCGCTTGGG ATGATTGCCGCGTGTCGATGCGCACAGACGATGGGGATGTGCGCCCCACA AATCGGGGATGATCTCGTCGGGATGCTGCGTTCAGCGGGACTGGGCGACA AAGCCGAAGGCTTGCCGGGATCTGATGAGATCATCGCTCGGATGGGTCAC GACAAGAAAGCGATCGGGTCTTCTGTGCGTGTGATTTTGCCGACAGGGAT CGGCTCGTGCACGATTGTCGATGATGCGCCGATCGAGGCGCTGATTGCTG GGATCGATGCGATTCGCGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82884:5..727+

>mRNA_M-pyrifera_M_contig82884.19369.1 ID=mRNA_M-pyrifera_M_contig82884.19369.1|Name=mRNA_M-pyrifera_M_contig82884.19369.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1446bp|location=Sequence derived from alignment at M-pyrifera_M_contig82884:5..727+ (Macrocystis pyrifera P11B4 male)
GACGATGGCACGCTCTTGAAGAATCTCGTCGGCGCGTTCCATCAACCCAA
GCTTGTCTGCGCCGATGTCGCGGTGCTCGACTCGCTTGAGCCGCGCCAGA
CGCGATCTGGACTCAGCGAGTGCATCAAGCACGCACAGATCTGCGACACT
GTGGGACACGCTGGACTCGCAGACTGGACACGCGATCAGATGCACACGAT
TCGCAGCGGGGATCGCTCGACACTCATCGCGCTCGTCGCTCGCAATGTGG
CGCTCAAAGCTTCTGTCGTCGCGAAAGACGAGCACGAGAGTCCCGATGCA
GTCGCTGGGGGTCGCATGCTGCTGAACTTCGGACACACCTTCGGTCACGC
GATCGAGACAATCGCAGGCGTGTGCAGCGTAGGGGGGGAGCAAATCGAGT
ATGACGATCCCAACTGCGGTCTCTATCACGGCGAAGCAGTGGCGCTTGGG
ATGATTGCCGCGTGTCGATGCGCACAGACGATGGGGATGTGCGCCCCACA
AATCGGGGATGATCTCGTCGGGATGCTGCGTTCAGCGGGACTGGGCGACA
AAGCCGAAGGCTTGCCGGGATCTGATGAGATCATCGCTCGGATGGGTCAC
GACAAGAAAGCGATCGGGTCTTCTGTGCGTGTGATTTTGCCGACAGGGAT
CGGCTCGTGCACGATTGTCGATGATGCGCCGATCGAGGCGCTGATTGCTG
GGATCGATGCGATTCGCGCGTGAGACGATGGCACGCTCTTGAAGAATCTC
GTCGGCGCGTTCCATCAACCCAAGCTTGTCTGCGCCGATGTCGCGGTGCT
CGACTCGCTTGAGCCGCGCCAGACGCGATCTGGACTCAGCGAGTGCATCA
AGCACGCACAGATCTGCGACACTGTGGGACACGCTGGACTCGCAGACTGG
ACACGCGATCAGATGCACACGATTCGCAGCGGGGATCGCTCGACACTCAT
CGCGCTCGTCGCTCGCAATGTGGCGCTCAAAGCTTCTGTCGTCGCGAAAG
ACGAGCACGAGAGTCCCGATGCAGTCGCTGGGGGTCGCATGCTGCTGAAC
TTCGGACACACCTTCGGTCACGCGATCGAGACAATCGCAGGCGTGTGCAG
CGTAGGGGGGGAGCAAATCGAGTATGACGATCCCAACTGCGGTCTCTATC
ACGGCGAAGCAGTGGCGCTTGGGATGATTGCCGCGTGTCGATGCGCACAG
ACGATGGGGATGTGCGCCCCACAAATCGGGGATGATCTCGTCGGGATGCT
GCGTTCAGCGGGACTGGGCGACAAAGCCGAAGGCTTGCCGGGATCTGATG
AGATCATCGCTCGGATGGGTCACGACAAGAAAGCGATCGGGTCTTCTGTG
CGTGTGATTTTGCCGACAGGGATCGGCTCGTGCACGATTGTCGATGATGC
GCCGATCGAGGCGCTGATTGCTGGGATCGATGCGATTCGCGCGTGA
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