mRNA_M-pyrifera_M_contig8288.19367.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8288.19367.1
Unique NamemRNA_M-pyrifera_M_contig8288.19367.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: D7FT36_ECTSI (Aspartyl protease family A01A, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT36_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.120e-35
Identity = 60/71 (84.51%), Postives = 68/71 (95.77%), Query Frame = 1
Query:    4 GKVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQV 216
            GKV+V+ELL+FIFPKSLQ PLSTGRLYAF +YGPLDSN++LR+G+NGQRVVS WEIDTMCLQFEREDILQV
Sbjct:   15 GKVNVQELLEFIFPKSLQHPLSTGRLYAFALYGPLDSNSELRSGYNGQRVVSTWEIDTMCLQFEREDILQV 85          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: A0A7S2B712_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B712_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.580e-25
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1
Query:   16 VEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQV 216
            +E +  F+FP++LQ P+STGRL+AFG YGPLD++A+LR+GH GQ VV  WE+DTMC QFEREDILQ+
Sbjct:    1 LEAVKRFVFPQNLQHPMSTGRLFAFGFYGPLDADARLRSGHKGQHVVGNWELDTMCRQFEREDILQI 67          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: A0A7S3Y154_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y154_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 9.700e-23
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    7 KVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQV 216
            +V +E L+ F+FP  LQ PLSTGRL+AFG+YGPLD N++LR+GH GQ +V  +E+D MC +FERE ILQV
Sbjct:   41 QVSLESLMVFLFPPGLQHPLSTGRLFAFGLYGPLDENSQLRSGHKGQHIVQRFELDAMCQRFEREIILQV 110          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: A0A7S4A522_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A522_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.210e-22
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   10 VDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQV 216
            V +++L+ F+FP  L  PLSTGRLYAFG YGPLD   +LR+G  GQ V+  WE+D MC QFERED LQV
Sbjct:   78 VSIDDLISFVFPADLYHPLSTGRLYAFGFYGPLDRQQQLRSGPKGQHVLGRWELDAMCHQFEREDCLQV 146          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: W4FQS8_9STRA (NDK domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQS8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.950e-19
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 KGKVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQVRG 222
            K  V ++ L+DF+FP ++Q P STGRL+ F +YGPLD+ ++LR+G  G  VV+  E++TMC+  EREDIL V G
Sbjct:  237 KAMVHLDALMDFLFPPNVQHPNSTGRLFVFSLYGPLDAKSRLRSGEKGMHVVTDIELNTMCVSIEREDILSVYG 310          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: A0A3R7GTJ3_9STRA (NDK domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GTJ3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.090e-19
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    4 GKVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQVRG 222
            G +D+++LL+F+FPK LQ P S GRL+ FG+YGPLDS+++LR+G  G  VV+  E+ TM  + EREDIL V G
Sbjct:  238 GAMDLDQLLNFLFPKHLQHPNSAGRLFVFGLYGPLDSHSRLRSGERGLHVVTDRELTTMSTRIEREDILAVYG 310          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: A0A5D6Y3J0_9STRA (NDK domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3J0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.330e-19
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 GKVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQV 216
             +VD+E+LLDF+FP+ LQ P S GRL+ FG+YGPLD+ A+LR+G  G  VV+  E+ TM  + EREDIL V
Sbjct:  206 AEVDLEQLLDFLFPRHLQHPNSAGRLFVFGLYGPLDAKARLRSGEKGLHVVTDLELTTMSKRMEREDILSV 276          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: W4FPA7_9STRA (NDK domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPA7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 9.740e-19
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 KGKVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQVRG 222
            K  V ++ L+DF+FP ++Q P STGRL+ F +YGPLD+ ++LR+G  G  VV+  E++TMC+  EREDIL V G
Sbjct:  237 KAMVHLDALMDFLFPPNVQHPNSTGRLFVFSLYGPLDAKSRLRSGEKGMHVVTDIELNTMCVSIEREDILSVYG 310          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: A0A6A5AZ06_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AZ06_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.070e-18
Identity = 37/71 (52.11%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   10 VDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQVRG 222
            V ++ L+DF+FP ++Q P STGRL+ F +YGPLD+ ++LR+G  G  VV+  E++TMC+  EREDIL V G
Sbjct:   30 VHLDALMDFLFPPNVQHPNSTGRLFVFSLYGPLDAKSRLRSGEKGMHVVTDIELNTMCVSIEREDILSVYG 100          
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Match: A0A3R7K4N4_9STRA (NDK domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K4N4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.260e-18
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    4 GKVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQRVVSAWEIDTMCLQFEREDILQV 216
            G +D+++LL+F+FPK LQ P S GRL+ FG+YGPLDS+++LR+G  G  VV+  E+ TM  + EREDIL V
Sbjct:  209 GAMDLDQLLNFLFPKHLQHPNSAGRLFVFGLYGPLDSHSRLRSGERGLHVVTDRELTTMSTRIEREDILAV 279          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8288.19367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT36_ECTSI3.120e-3584.51Aspartyl protease family A01A, putative n=1 Tax=Ec... [more]
A0A7S2B712_9STRA2.580e-2565.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3Y154_HETAK9.700e-2361.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4A522_9STRA4.210e-2260.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W4FQS8_9STRA5.950e-1951.35NDK domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A3R7GTJ3_9STRA8.090e-1954.79NDK domain-containing protein n=4 Tax=Phytophthora... [more]
A0A5D6Y3J0_9STRA9.330e-1956.34NDK domain-containing protein n=1 Tax=Pythium bras... [more]
W4FPA7_9STRA9.740e-1951.35NDK domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A6A5AZ06_9STRA1.070e-1852.11Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7K4N4_9STRA3.260e-1854.93NDK domain-containing protein n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8288contigM-pyrifera_M_contig8288:433..657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue5.3e-28
Seed eggNOG ortholog2880.D7FT36
Hectar predicted targeting categoryother localisation
EggNOG OGs2CN2N@1,2QTJA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.707743-CDS-M-pyrifera_M_contig8288:432..6571622816735.707743-CDS-M-pyrifera_M_contig8288:432..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8288 433..657 -
1692278147.7241006-CDS-M-pyrifera_M_contig8288:432..6571692278147.7241006-CDS-M-pyrifera_M_contig8288:432..657Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8288 433..657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8288.19367.1prot_M-pyrifera_M_contig8288.19367.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8288 433..657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8288.19367.1

>prot_M-pyrifera_M_contig8288.19367.1 ID=prot_M-pyrifera_M_contig8288.19367.1|Name=mRNA_M-pyrifera_M_contig8288.19367.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
KGKVDVEELLDFIFPKSLQQPLSTGRLYAFGMYGPLDSNAKLRAGHNGQR
VVSAWEIDTMCLQFEREDILQVRG*
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mRNA from alignment at M-pyrifera_M_contig8288:433..657-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8288.19367.1 ID=mRNA_M-pyrifera_M_contig8288.19367.1|Name=mRNA_M-pyrifera_M_contig8288.19367.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig8288:433..657- (Macrocystis pyrifera P11B4 male)
AAGGGGAAGGTCGACGTGGAAGAGCTGCTTGATTTCATTTTTCCGAAGTC GCTTCAGCAGCCGCTCTCCACCGGTAGGTTGTACGCGTTCGGCATGTACG GTCCTCTGGATTCGAACGCGAAGCTGCGGGCTGGGCACAACGGCCAGCGG GTTGTGAGTGCGTGGGAAATCGACACCATGTGCCTGCAGTTCGAGCGCGA GGATATTCTGCAGGTGCGTGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8288:433..657-

>mRNA_M-pyrifera_M_contig8288.19367.1 ID=mRNA_M-pyrifera_M_contig8288.19367.1|Name=mRNA_M-pyrifera_M_contig8288.19367.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig8288:433..657- (Macrocystis pyrifera P11B4 male)
AAGGGGAAGGTCGACGTGGAAGAGCTGCTTGATTTCATTTTTCCGAAGTC
GCTTCAGCAGCCGCTCTCCACCGGTAGGTTGTACGCGTTCGGCATGTACG
GTCCTCTGGATTCGAACGCGAAGCTGCGGGCTGGGCACAACGGCCAGCGG
GTTGTGAGTGCGTGGGAAATCGACACCATGTGCCTGCAGTTCGAGCGCGA
GGATATTCTGCAGGTGCGTGGGTGAAAGGGGAAGGTCGACGTGGAAGAGC
TGCTTGATTTCATTTTTCCGAAGTCGCTTCAGCAGCCGCTCTCCACCGGT
AGGTTGTACGCGTTCGGCATGTACGGTCCTCTGGATTCGAACGCGAAGCT
GCGGGCTGGGCACAACGGCCAGCGGGTTGTGAGTGCGTGGGAAATCGACA
CCATGTGCCTGCAGTTCGAGCGCGAGGATATTCTGCAGGTGCGTGGGTGA
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