mRNA_M-pyrifera_M_contig82860.19360.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82860.19360.1
Unique NamemRNA_M-pyrifera_M_contig82860.19360.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82860.19360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82860contigM-pyrifera_M_contig82860:3..896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size894
Cds size894
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816735.4542267-CDS-M-pyrifera_M_contig82860:2..8961622816735.4542267-CDS-M-pyrifera_M_contig82860:2..896Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82860 3..896 +
1692278147.6248627-CDS-M-pyrifera_M_contig82860:2..8961692278147.6248627-CDS-M-pyrifera_M_contig82860:2..896Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82860 3..896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82860.19360.1prot_M-pyrifera_M_contig82860.19360.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82860 3..896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82860.19360.1

>prot_M-pyrifera_M_contig82860.19360.1 ID=prot_M-pyrifera_M_contig82860.19360.1|Name=mRNA_M-pyrifera_M_contig82860.19360.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=298bp
IETNRWVSKKNYFDLKKTFFFLMILSAFLAIVTYSLSGYLVFYIEDVELK
ANAILYLQSISSSIIPITGLFVLTGISRGISKPKIALVFTVLIIILNAVL
DYLFIKIMANPIVAVGRATVFSDAIGVALYYSYILKYFSTQSFKHQQIYT
FTTRSLKLGFEKVISSGFLSIGLSTTVALLPIAFSGFYYGLERYLLPLFL
FGYALFEWRLHQKSAKKNKENSVIYVFVCVASAIYTFFILIFMESQNNWL
YGLLYLSLIFLFWNERLSVADLFSAKKENAAIKIVTCYKVSTVLSLFL
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mRNA from alignment at M-pyrifera_M_contig82860:3..896+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82860.19360.1 ID=mRNA_M-pyrifera_M_contig82860.19360.1|Name=mRNA_M-pyrifera_M_contig82860.19360.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig82860:3..896+ (Macrocystis pyrifera P11B4 male)
ATAGAAACAAACCGTTGGGTAAGCAAAAAAAACTATTTTGACTTAAAGAA
AACATTTTTCTTCTTGATGATTTTAAGCGCCTTTTTAGCAATTGTTACTT
ACAGCTTATCTGGTTATTTAGTTTTTTACATCGAAGATGTTGAGTTAAAA
GCGAATGCCATTTTGTATTTGCAAAGTATTTCATCATCGATTATACCAAT
AACAGGGCTGTTTGTGTTGACGGGTATTTCAAGAGGTATATCTAAACCAA
AAATTGCATTAGTTTTTACAGTTTTAATTATTATTCTCAATGCAGTACTT
GACTATTTGTTCATTAAAATCATGGCCAACCCCATTGTTGCGGTAGGAAG
AGCAACTGTGTTTTCAGATGCCATCGGTGTTGCACTGTATTACAGTTATA
TCTTAAAGTATTTTTCAACTCAAAGTTTCAAGCACCAGCAAATATACACC
TTCACTACCCGATCACTAAAGCTGGGCTTTGAAAAAGTTATATCTAGTGG
TTTTTTAAGTATTGGTCTGTCTACCACAGTCGCACTACTTCCTATTGCCT
TCTCTGGTTTTTATTACGGATTAGAGAGGTATTTATTGCCATTGTTTTTA
TTTGGATATGCATTGTTTGAGTGGCGACTACATCAAAAATCAGCAAAGAA
AAACAAAGAAAATTCTGTCATATACGTATTTGTGTGTGTGGCCTCAGCTA
TATATACTTTTTTTATCCTAATTTTTATGGAATCACAAAATAATTGGCTA
TATGGATTGTTATATTTGTCCTTGATATTTTTATTTTGGAACGAAAGGCT
ATCAGTAGCTGATTTGTTTTCAGCAAAAAAAGAGAATGCCGCTATAAAAA
TAGTAACTTGTTATAAAGTCAGCACAGTTTTAAGTCTGTTTTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82860:3..896+

>mRNA_M-pyrifera_M_contig82860.19360.1 ID=mRNA_M-pyrifera_M_contig82860.19360.1|Name=mRNA_M-pyrifera_M_contig82860.19360.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1788bp|location=Sequence derived from alignment at M-pyrifera_M_contig82860:3..896+ (Macrocystis pyrifera P11B4 male)
ATAGAAACAAACCGTTGGGTAAGCAAAAAAAACTATTTTGACTTAAAGAA
AACATTTTTCTTCTTGATGATTTTAAGCGCCTTTTTAGCAATTGTTACTT
ACAGCTTATCTGGTTATTTAGTTTTTTACATCGAAGATGTTGAGTTAAAA
GCGAATGCCATTTTGTATTTGCAAAGTATTTCATCATCGATTATACCAAT
AACAGGGCTGTTTGTGTTGACGGGTATTTCAAGAGGTATATCTAAACCAA
AAATTGCATTAGTTTTTACAGTTTTAATTATTATTCTCAATGCAGTACTT
GACTATTTGTTCATTAAAATCATGGCCAACCCCATTGTTGCGGTAGGAAG
AGCAACTGTGTTTTCAGATGCCATCGGTGTTGCACTGTATTACAGTTATA
TCTTAAAGTATTTTTCAACTCAAAGTTTCAAGCACCAGCAAATATACACC
TTCACTACCCGATCACTAAAGCTGGGCTTTGAAAAAGTTATATCTAGTGG
TTTTTTAAGTATTGGTCTGTCTACCACAGTCGCACTACTTCCTATTGCCT
TCTCTGGTTTTTATTACGGATTAGAGAGGTATTTATTGCCATTGTTTTTA
TTTGGATATGCATTGTTTGAGTGGCGACTACATCAAAAATCAGCAAAGAA
AAACAAAGAAAATTCTGTCATATACGTATTTGTGTGTGTGGCCTCAGCTA
TATATACTTTTTTTATCCTAATTTTTATGGAATCACAAAATAATTGGCTA
TATGGATTGTTATATTTGTCCTTGATATTTTTATTTTGGAACGAAAGGCT
ATCAGTAGCTGATTTGTTTTCAGCAAAAAAAGAGAATGCCGCTATAAAAA
TAGTAACTTGTTATAAAGTCAGCACAGTTTTAAGTCTGTTTTTAATAGAA
ACAAACCGTTGGGTAAGCAAAAAAAACTATTTTGACTTAAAGAAAACATT
TTTCTTCTTGATGATTTTAAGCGCCTTTTTAGCAATTGTTACTTACAGCT
TATCTGGTTATTTAGTTTTTTACATCGAAGATGTTGAGTTAAAAGCGAAT
GCCATTTTGTATTTGCAAAGTATTTCATCATCGATTATACCAATAACAGG
GCTGTTTGTGTTGACGGGTATTTCAAGAGGTATATCTAAACCAAAAATTG
CATTAGTTTTTACAGTTTTAATTATTATTCTCAATGCAGTACTTGACTAT
TTGTTCATTAAAATCATGGCCAACCCCATTGTTGCGGTAGGAAGAGCAAC
TGTGTTTTCAGATGCCATCGGTGTTGCACTGTATTACAGTTATATCTTAA
AGTATTTTTCAACTCAAAGTTTCAAGCACCAGCAAATATACACCTTCACT
ACCCGATCACTAAAGCTGGGCTTTGAAAAAGTTATATCTAGTGGTTTTTT
AAGTATTGGTCTGTCTACCACAGTCGCACTACTTCCTATTGCCTTCTCTG
GTTTTTATTACGGATTAGAGAGGTATTTATTGCCATTGTTTTTATTTGGA
TATGCATTGTTTGAGTGGCGACTACATCAAAAATCAGCAAAGAAAAACAA
AGAAAATTCTGTCATATACGTATTTGTGTGTGTGGCCTCAGCTATATATA
CTTTTTTTATCCTAATTTTTATGGAATCACAAAATAATTGGCTATATGGA
TTGTTATATTTGTCCTTGATATTTTTATTTTGGAACGAAAGGCTATCAGT
AGCTGATTTGTTTTCAGCAAAAAAAGAGAATGCCGCTATAAAAATAGTAA
CTTGTTATAAAGTCAGCACAGTTTTAAGTCTGTTTTTA
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