mRNA_M-pyrifera_M_contig82694.19326.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82694.19326.1
Unique NamemRNA_M-pyrifera_M_contig82694.19326.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82694.19326.1 vs. uniprot
Match: A0A8H7VQF9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VQF9_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 5.840e-6
Identity = 35/144 (24.31%), Postives = 70/144 (48.61%), Query Frame = 1 
Query:   25 EGDAVTEVELSTVEPMEDDLGMSTKFSRRPVLG-KALLSASLFEEAAAEVVSVPNDVKVFSLQLMPVMPYLRLNVESTGGSVTVDFHGGLDSFESFDCKKELSFTYHMESFRQAVQGLGFAKDTLLRVNEIGSFALTHRLRDAH 453
            E D  T   L T+EP  ++L +S   +  P L  +A++ +S  +EA +++       +  ++   P  P   L  E   G+  +++    +SF SF C +E +++YH        + L  + +  LRV+  G  ++  R++++H
Sbjct:  124 ENDVSTHCRLVTLEPDSENLELS--LNDEPNLSQRAIMKSSWLKEAMSDL---DKSCEKINMTFSPTDPCFSLTGEGNNGTFEMEYPEHSESFISFHCNEEATYSYHFSHIVYCNKALDQSDEVSLRVSRDGVLSMLFRIQESH 262
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82694.19326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8H7VQF9_9FUNG5.840e-624.31Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82694contigM-pyrifera_M_contig82694:244..732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816733.6109068-CDS-M-pyrifera_M_contig82694:243..7321622816733.6109068-CDS-M-pyrifera_M_contig82694:243..732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82694 244..732 -
1692278146.5471542-CDS-M-pyrifera_M_contig82694:243..7321692278146.5471542-CDS-M-pyrifera_M_contig82694:243..732Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82694 244..732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82694.19326.1prot_M-pyrifera_M_contig82694.19326.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82694 244..732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82694.19326.1

>prot_M-pyrifera_M_contig82694.19326.1 ID=prot_M-pyrifera_M_contig82694.19326.1|Name=mRNA_M-pyrifera_M_contig82694.19326.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
SLLKLIVAEGDAVTEVELSTVEPMEDDLGMSTKFSRRPVLGKALLSASLF
EEAAAEVVSVPNDVKVFSLQLMPVMPYLRLNVESTGGSVTVDFHGGLDSF
ESFDCKKELSFTYHMESFRQAVQGLGFAKDTLLRVNEIGSFALTHRLRDA
HGSAALVSFFLSP
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mRNA from alignment at M-pyrifera_M_contig82694:244..732-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82694.19326.1 ID=mRNA_M-pyrifera_M_contig82694.19326.1|Name=mRNA_M-pyrifera_M_contig82694.19326.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig82694:244..732- (Macrocystis pyrifera P11B4 male)
AGTTTGTTGAAGTTGATTGTGGCTGAAGGAGATGCTGTGACTGAAGTGGA
GTTGAGTACAGTGGAGCCAATGGAAGATGATTTGGGAATGTCAACAAAGT
TTTCTCGAAGACCTGTTTTGGGAAAAGCACTCTTGTCTGCGTCTTTGTTT
GAAGAAGCAGCTGCTGAAGTTGTGTCGGTGCCAAATGATGTGAAAGTATT
TTCTTTGCAGTTGATGCCTGTAATGCCATACTTGAGGCTGAATGTGGAAT
CGACAGGTGGAAGTGTGACAGTGGATTTCCATGGTGGTCTTGATAGTTTT
GAGTCTTTTGATTGCAAGAAGGAGCTCTCGTTCACATATCATATGGAGTC
TTTTCGGCAAGCTGTGCAAGGGCTTGGTTTTGCAAAGGATACACTGCTAC
GAGTGAACGAAATTGGATCGTTTGCACTCACTCATCGTCTACGAGATGCG
CATGGTTCTGCCGCTTTGGTATCGTTCTTCCTTTCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82694:244..732-

>mRNA_M-pyrifera_M_contig82694.19326.1 ID=mRNA_M-pyrifera_M_contig82694.19326.1|Name=mRNA_M-pyrifera_M_contig82694.19326.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig82694:244..732- (Macrocystis pyrifera P11B4 male)
AGTTTGTTGAAGTTGATTGTGGCTGAAGGAGATGCTGTGACTGAAGTGGA
GTTGAGTACAGTGGAGCCAATGGAAGATGATTTGGGAATGTCAACAAAGT
TTTCTCGAAGACCTGTTTTGGGAAAAGCACTCTTGTCTGCGTCTTTGTTT
GAAGAAGCAGCTGCTGAAGTTGTGTCGGTGCCAAATGATGTGAAAGTATT
TTCTTTGCAGTTGATGCCTGTAATGCCATACTTGAGGCTGAATGTGGAAT
CGACAGGTGGAAGTGTGACAGTGGATTTCCATGGTGGTCTTGATAGTTTT
GAGTCTTTTGATTGCAAGAAGGAGCTCTCGTTCACATATCATATGGAGTC
TTTTCGGCAAGCTGTGCAAGGGCTTGGTTTTGCAAAGGATACACTGCTAC
GAGTGAACGAAATTGGATCGTTTGCACTCACTCATCGTCTACGAGATGCG
CATGGTTCTGCCGCTTTGGTATCGTTCTTCCTTTCTCCTAGTTTGTTGAA
GTTGATTGTGGCTGAAGGAGATGCTGTGACTGAAGTGGAGTTGAGTACAG
TGGAGCCAATGGAAGATGATTTGGGAATGTCAACAAAGTTTTCTCGAAGA
CCTGTTTTGGGAAAAGCACTCTTGTCTGCGTCTTTGTTTGAAGAAGCAGC
TGCTGAAGTTGTGTCGGTGCCAAATGATGTGAAAGTATTTTCTTTGCAGT
TGATGCCTGTAATGCCATACTTGAGGCTGAATGTGGAATCGACAGGTGGA
AGTGTGACAGTGGATTTCCATGGTGGTCTTGATAGTTTTGAGTCTTTTGA
TTGCAAGAAGGAGCTCTCGTTCACATATCATATGGAGTCTTTTCGGCAAG
CTGTGCAAGGGCTTGGTTTTGCAAAGGATACACTGCTACGAGTGAACGAA
ATTGGATCGTTTGCACTCACTCATCGTCTACGAGATGCGCATGGTTCTGC
CGCTTTGGTATCGTTCTTCCTTTCTCCT
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