mRNA_M-pyrifera_M_contig82611.19310.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82611.19310.1
Unique NamemRNA_M-pyrifera_M_contig82611.19310.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82611.19310.1 vs. uniprot
Match: D7G1B2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1B2_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.420e-16
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 ADVPLKLPGLVSDGSTIVTHSTLARMESTLPKHHRGYNYYLLYSTFR 141
            A+ PL+LPGLV  GSTIVTH+TLARME+  PKHHRGYN+YLLYSTFR
Sbjct:  430 AEAPLQLPGLVCGGSTIVTHTTLARMEAAQPKHHRGYNWYLLYSTFR 476
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82611.19310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1B2_ECTSI2.420e-1678.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82611contigM-pyrifera_M_contig82611:399..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue8.2e-14
Seed eggNOG ortholog2880.D7G1B2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.84301-CDS-M-pyrifera_M_contig82611:398..5421622816732.84301-CDS-M-pyrifera_M_contig82611:398..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82611 399..542 -
1692278146.158699-CDS-M-pyrifera_M_contig82611:398..5421692278146.158699-CDS-M-pyrifera_M_contig82611:398..542Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82611 399..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82611.19310.1prot_M-pyrifera_M_contig82611.19310.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82611 399..542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82611.19310.1

>prot_M-pyrifera_M_contig82611.19310.1 ID=prot_M-pyrifera_M_contig82611.19310.1|Name=mRNA_M-pyrifera_M_contig82611.19310.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
ADVPLKLPGLVSDGSTIVTHSTLARMESTLPKHHRGYNYYLLYSTFR*
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mRNA from alignment at M-pyrifera_M_contig82611:399..542-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82611.19310.1 ID=mRNA_M-pyrifera_M_contig82611.19310.1|Name=mRNA_M-pyrifera_M_contig82611.19310.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig82611:399..542- (Macrocystis pyrifera P11B4 male)
GCGGACGTGCCCCTCAAACTGCCGGGGCTCGTTTCGGACGGGAGTACAAT
AGTGACGCACTCGACGCTGGCCCGCATGGAGTCCACGCTGCCCAAGCACC
ACCGCGGGTACAACTACTACCTCCTGTACAGCACTTTCCGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82611:399..542-

>mRNA_M-pyrifera_M_contig82611.19310.1 ID=mRNA_M-pyrifera_M_contig82611.19310.1|Name=mRNA_M-pyrifera_M_contig82611.19310.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig82611:399..542- (Macrocystis pyrifera P11B4 male)
GCGGACGTGCCCCTCAAACTGCCGGGGCTCGTTTCGGACGGGAGTACAAT
AGTGACGCACTCGACGCTGGCCCGCATGGAGTCCACGCTGCCCAAGCACC
ACCGCGGGTACAACTACTACCTCCTGTACAGCACTTTCCGGTGAGCGGAC
GTGCCCCTCAAACTGCCGGGGCTCGTTTCGGACGGGAGTACAATAGTGAC
GCACTCGACGCTGGCCCGCATGGAGTCCACGCTGCCCAAGCACCACCGCG
GGTACAACTACTACCTCCTGTACAGCACTTTCCGGTGA
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