mRNA_M-pyrifera_M_contig8261.19309.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8261.19309.1
Unique NamemRNA_M-pyrifera_M_contig8261.19309.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8261.19309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8261contigM-pyrifera_M_contig8261:2420..2883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size464
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8261.19309.1prot_M-pyrifera_M_contig8261.19309.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8261 2482..2835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.7828016-UTR-M-pyrifera_M_contig8261:2419..24811622816732.7828016-UTR-M-pyrifera_M_contig8261:2419..2481Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8261 2420..2481 +
1692278146.1198163-UTR-M-pyrifera_M_contig8261:2419..24811692278146.1198163-UTR-M-pyrifera_M_contig8261:2419..2481Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8261 2420..2481 +
1622816732.8080063-UTR-M-pyrifera_M_contig8261:2835..28831622816732.8080063-UTR-M-pyrifera_M_contig8261:2835..2883Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8261 2836..2883 +
1692278146.1479728-UTR-M-pyrifera_M_contig8261:2835..28831692278146.1479728-UTR-M-pyrifera_M_contig8261:2835..2883Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8261 2836..2883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816732.7944236-CDS-M-pyrifera_M_contig8261:2481..28351622816732.7944236-CDS-M-pyrifera_M_contig8261:2481..2835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8261 2482..2835 +
1692278146.1341193-CDS-M-pyrifera_M_contig8261:2481..28351692278146.1341193-CDS-M-pyrifera_M_contig8261:2481..2835Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8261 2482..2835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8261.19309.1

>prot_M-pyrifera_M_contig8261.19309.1 ID=prot_M-pyrifera_M_contig8261.19309.1|Name=mRNA_M-pyrifera_M_contig8261.19309.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
MKVAVSALLFYPPRLLVKKGRSKGGGVLGGWRFCFCLRPSNESVRFCSVM
CACVHVCAFSFSCSLVCLFCLFFFHLIFFRRGVIVLGCCCDCCSVFPSSD
PEAPPVVVARFCCCRLV*
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mRNA from alignment at M-pyrifera_M_contig8261:2420..2883+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8261.19309.1 ID=mRNA_M-pyrifera_M_contig8261.19309.1|Name=mRNA_M-pyrifera_M_contig8261.19309.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=464bp|location=Sequence derived from alignment at M-pyrifera_M_contig8261:2420..2883+ (Macrocystis pyrifera P11B4 male)
GCAAAAAAGCGAATTTCGAGTTTTGATCTATTTTGCTGCGTGTTTTGGAC
TCATTGTTGTGAATGAAGGTTGCGGTGTCTGCTTTGCTGTTTTACCCCCC
GCGCTTGCTGGTGAAGAAAGGGCGGAGTAAGGGAGGGGGTGTGTTGGGCG
GCTGGAGATTTTGTTTCTGCCTGAGGCCTTCTAATGAGTCGGTCCGGTTT
TGTAGCGTGATGTGTGCATGTGTGCATGTTTGTGCGTTTTCGTTTTCTTG
TTCACTTGTTTGTTTGTTTTGTTTGTTTTTTTTCCATCTTATTTTTTTTA
GGCGAGGGGTGATCGTTTTAGGGTGTTGTTGTGACTGCTGTAGTGTTTTC
CCGAGTAGCGACCCCGAGGCCCCACCAGTCGTTGTTGCACGATTTTGTTG
TTGTCGCTTGGTTTGATGCGGTGGTAAACTAGTGTCGGTAGGAGAGCAGA
GCACGCACGCCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8261:2420..2883+

>mRNA_M-pyrifera_M_contig8261.19309.1 ID=mRNA_M-pyrifera_M_contig8261.19309.1|Name=mRNA_M-pyrifera_M_contig8261.19309.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig8261:2420..2883+ (Macrocystis pyrifera P11B4 male)
ATGAAGGTTGCGGTGTCTGCTTTGCTGTTTTACCCCCCGCGCTTGCTGGT
GAAGAAAGGGCGGAGTAAGGGAGGGGGTGTGTTGGGCGGCTGGAGATTTT
GTTTCTGCCTGAGGCCTTCTAATGAGTCGGTCCGGTTTTGTAGCGTGATG
TGTGCATGTGTGCATGTTTGTGCGTTTTCGTTTTCTTGTTCACTTGTTTG
TTTGTTTTGTTTGTTTTTTTTCCATCTTATTTTTTTTAGGCGAGGGGTGA
TCGTTTTAGGGTGTTGTTGTGACTGCTGTAGTGTTTTCCCGAGTAGCGAC
CCCGAGGCCCCACCAGTCGTTGTTGCACGATTTTGTTGTTGTCGCTTGGT
TTGAATGAAGGTTGCGGTGTCTGCTTTGCTGTTTTACCCCCCGCGCTTGC
TGGTGAAGAAAGGGCGGAGTAAGGGAGGGGGTGTGTTGGGCGGCTGGAGA
TTTTGTTTCTGCCTGAGGCCTTCTAATGAGTCGGTCCGGTTTTGTAGCGT
GATGTGTGCATGTGTGCATGTTTGTGCGTTTTCGTTTTCTTGTTCACTTG
TTTGTTTGTTTTGTTTGTTTTTTTTCCATCTTATTTTTTTTAGGCGAGGG
GTGATCGTTTTAGGGTGTTGTTGTGACTGCTGTAGTGTTTTCCCGAGTAG
CGACCCCGAGGCCCCACCAGTCGTTGTTGCACGATTTTGTTGTTGTCGCT
TGGTTTGA
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