mRNA_M-pyrifera_M_contig825.19281.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig825.19281.1
Unique NamemRNA_M-pyrifera_M_contig825.19281.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 6.490e-36
Identity = 64/85 (75.29%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            KVKLD  GRLSHLFWMTA Q+ALA+RYG+VLLYDDTAVKNRYRLPLGLG+VIDGEY++ IVFQ++T DTT    EW+LE F+ AR
Sbjct:  311 KVKLDENGRLSHLFWMTAEQIALASRYGSVLLYDDTAVKNRYRLPLGLGVVIDGEYFSRIVFQSLTVDTTAVTFEWVLEEFKAAR 395
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.130e-27
Identity = 48/84 (57.14%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:    7 VKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            +K+   GR++H+FWMTA QVAL+ +YG V LYDDTAVKN+YRLP+G+G VIDGEY+T + FQ I++DT  +  EW++E++ E R
Sbjct:   84 LKMGTEGRMTHIFWMTASQVALSIKYGHVRLYDDTAVKNKYRLPVGIGAVIDGEYFTRVAFQMISSDTQAETFEWMMESWMETR 167
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5K0P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 4.540e-25
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            ++K+D  GRL+H +W T  QVAL  RYG V LYDDTAVKNRYR+PLG+  VID EY T IV Q+ITADTT     W+L++  E+R
Sbjct:   21 EIKMDDSGRLTHSWWQTREQVALWNRYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESR 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5KUA5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 7.730e-24
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            ++K+D  GRL+H++W T  QVAL  RYG V LYDDTAVKNRYR+PLG+  VID EY T IV Q ITADTT  A+ W+L++  E+R
Sbjct:  220 EIKMDDSGRLTHIWWQTREQVALWNRYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQIITADTTTDALLWMLKSALESR 304
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: D8LU83_ECTSI (SWIM-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU83_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.300e-23
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            ++K+D  GRL+H++W T  QVAL  RYG V LYDDTAVKNRYR+PLG+  V+D EY T IV Q+ITADTT     W+L++  E+R
Sbjct:  171 EIKMDDSGRLTHIWWQTKEQVALWNRYGHVALYDDTAVKNRYRMPLGVLAVVDSEYRTRIVGQSITADTTTDTFLWMLKSALESR 255
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5K3E8_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.650e-23
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            ++K+D  GRL+H++W T  QV L  RYG V LYDDTAVKNRYR+PLG+  VID EY T IV Q+ITADTT     W+L++  E+R
Sbjct:   51 EIKMDDSGRLTHIWWQTREQVVLWNRYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESR 135
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5K5C5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 9.800e-23
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            ++K+D  GRL+H++W T  QV L  RYG V LYDDTAVKNRYR+PLG+  VID EY T IV Q+ITADTT     W+L++  E+R
Sbjct:   51 EIKMDDSGRLTHIWWQTREQVVLWNRYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESR 135
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.340e-22
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            ++K+D  GRL+H++W T  QVAL  R G V LYDDTAVKNRYR+PLG+  VID EY T IV Q+ITADTT     W+L++  E+R
Sbjct:  548 EIKMDDSGRLTHIWWQTREQVALWNRCGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTDTFLWMLKSALESR 632
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.680e-21
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    4 KVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR 258
            ++K+D  GRL+H++W T  QVAL  RYG V LYDDTAVKNRYR+PLG+  VID EY T IV Q ITADTT      +L++  E+R
Sbjct:  271 EIKMDDSGRLTHIWWQTREQVALWNRYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQIITADTTTDTFLSMLKSALESR 355
[Close]
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Match: A0A6H5JFD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 6.280e-19
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:   13 LDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLGIVIDGEYYTFIVFQTITADTTRKAVEW 231
            +D  GRL+H++W +  QVAL   YG V LYDDTAVKNRYR+PLG+  VID EY T IV Q+ITADTT     W
Sbjct:    1 MDDSGRLTHIWWQSREQVALWNGYGHVTLYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQSITADTTTNTFVW 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig825.19281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JJG6_9PHAE6.490e-3675.29SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JWW3_9PHAE2.130e-2757.14MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K0P6_9PHAE4.540e-2558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA5_9PHAE7.730e-2460.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LU83_ECTSI4.300e-2357.65SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3E8_9PHAE8.650e-2357.65SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K5C5_9PHAE9.800e-2357.65MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LMZ3_9PHAE5.340e-2257.65SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUZ2_9PHAE4.680e-2157.65SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFD7_9PHAE6.280e-1960.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig825contigM-pyrifera_M_contig825:5676..6145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue2.3e-19
Seed eggNOG ortholog2880.D8LU83
Preferred nameFHY3
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.MULE transposase domain
EggNOG OGs2CMBY@1,2QPXR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.533145-CDS-M-pyrifera_M_contig825:5675..57381622816731.533145-CDS-M-pyrifera_M_contig825:5675..5738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig825 5676..5738 +
1692278145.4710288-CDS-M-pyrifera_M_contig825:5675..57381692278145.4710288-CDS-M-pyrifera_M_contig825:5675..5738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig825 5676..5738 +
1622816731.543439-CDS-M-pyrifera_M_contig825:5949..61441622816731.543439-CDS-M-pyrifera_M_contig825:5949..6144Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig825 5950..6144 +
1692278145.4824681-CDS-M-pyrifera_M_contig825:5949..61441692278145.4824681-CDS-M-pyrifera_M_contig825:5949..6144Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig825 5950..6144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig825.19281.1prot_M-pyrifera_M_contig825.19281.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig825 5676..6144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig825.19281.1

>prot_M-pyrifera_M_contig825.19281.1 ID=prot_M-pyrifera_M_contig825.19281.1|Name=mRNA_M-pyrifera_M_contig825.19281.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
SKVKLDYRGRLSHLFWMTAGQVALAARYGAVLLYDDTAVKNRYRLPLGLG
IVIDGEYYTFIVFQTITADTTRKAVEWILEAFQEAR
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mRNA from alignment at M-pyrifera_M_contig825:5676..6145+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig825.19281.1 ID=mRNA_M-pyrifera_M_contig825.19281.1|Name=mRNA_M-pyrifera_M_contig825.19281.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=470bp|location=Sequence derived from alignment at M-pyrifera_M_contig825:5676..6145+ (Macrocystis pyrifera P11B4 male)
TCGAAGGTCAAGCTTGACTACCGCGGAAGGCTTTCGCACTTGTTTTGGAT
GACGGCCGGACAGGTGGGTCAGGAGTTTTGTGGAAGGGATCAGTGGTGTA
GTCTTGGTGCCAGAAAGTGAACTGGCGTAGTCTTTGTGTCTGAATCGATA
TTGTTGAGTTTTGACGTCTTGTCCGCGTTGTACGCGATATTGTGCCTTCT
GGTCCGGCTAGGCTGGCATCTGACCACTTGCCTCGCACCCCACTCGACGA
CGTACGCACGCATCATGCCCACAGGTCGCGCTCGCAGCCCGGTATGGGGC
GGTGCTTCTTTACGACGACACCGCGGTGAAGAACCGGTATCGCCTTCCGC
TCGGCCTTGGGATTGTGATCGATGGAGAGTACTACACGTTCATTGTCTTC
CAGACCATCACGGCCGACACAACAAGGAAGGCCGTCGAGTGGATTCTGGA
GGCATTTCAAGAGGCAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig825:5676..6145+

>mRNA_M-pyrifera_M_contig825.19281.1 ID=mRNA_M-pyrifera_M_contig825.19281.1|Name=mRNA_M-pyrifera_M_contig825.19281.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig825:5676..6145+ (Macrocystis pyrifera P11B4 male)
TCGAAGGTCAAGCTTGACTACCGCGGAAGGCTTTCGCACTTGTTTTGGAT
GACGGCCGGACAGTCGAAGGTCAAGCTTGACTACCGCGGAAGGCTTTCGC
ACTTGTTTTGGATGACGGCCGGACAGGTCGCGCTCGCAGCCCGGTATGGG
GCGGTGCTTCTTTACGACGACACCGCGGTGAAGAACCGGTATCGCCTTCC
GCTCGGCCTTGGGATTGTGATCGATGGAGAGTACTACACGTTCATTGTCT
TCCAGACCATCACGGCCGACACAACAAGGAAGGCCGTCGAGTGGATTCTG
GAGGCATTTCAAGAGGCAAGAGTCGCGCTCGCAGCCCGGTATGGGGCGGT
GCTTCTTTACGACGACACCGCGGTGAAGAACCGGTATCGCCTTCCGCTCG
GCCTTGGGATTGTGATCGATGGAGAGTACTACACGTTCATTGTCTTCCAG
ACCATCACGGCCGACACAACAAGGAAGGCCGTCGAGTGGATTCTGGAGGC
ATTTCAAGAGGCAAGA
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