mRNA_M-pyrifera_M_contig8249.19280.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8249.19280.1
Unique NamemRNA_M-pyrifera_M_contig8249.19280.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8249.19280.1 vs. uniprot
Match: D8LQT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT9_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.050e-51
Identity = 117/205 (57.07%), Postives = 136/205 (66.34%), Query Frame = 1 
Query:    1 RYETEDMARATRIGRRGDPPAPIMAVGLPREEAVGPRGERPPAAAAESERQEMDGGEGGALVLDARDDATTRVRR-IPGGVLQSAPRWVEDQHGAPHDKIPLDIDPEAGKDQVGARRDKGHRYLRFETQAGRGEDTPPARPSAGSGANDFM---FGFGLEDGSVAAEGDVLVLDSRSAAADGVSGAGGGVPQLGKQAPRWPDERG 603
            RYETED+AR TR GR GD P P+MAVG+ R+EAVGPRGERP  AA E +R++ +G EGG LVLD  DD TTR RR +PGGVL  APRW  ++ GA  D   LDI PEAG+D VG RRDKGHRYLRFETQAGRG       P+A  G +  +   FGFG+   +VAAEGDVLVL  R  A      A      L KQ PRW + +G
Sbjct: 1435 RYETEDLARTTRTGRLGDAPVPVMAVGVARKEAVGPRGERPEVAA-EMDRED-EGEEGGVLVLDVPDDVTTRGRRHVPGGVLSYAPRWTSEKEGAKWDGEVLDIKPEAGRDVVGPRRDKGHRYLRFETQAGRGGGDGSITPTAAGGLSPGVANGFGFGV---AVAAEGDVLVLSPRDPADVRPKVA----VNLDKQVPRWSEGQG 1630
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8249.19280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQT9_ECTSI1.050e-5157.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8249contigM-pyrifera_M_contig8249:6677..10680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-24_002260.1
Exons4
Model size603
Cds size585
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8249.19280.1prot_M-pyrifera_M_contig8249.19280.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8249 6677..10662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.4461017-CDS-M-pyrifera_M_contig8249:6676..68951622816731.4461017-CDS-M-pyrifera_M_contig8249:6676..6895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 6677..6895 -
1692278145.421673-CDS-M-pyrifera_M_contig8249:6676..68951692278145.421673-CDS-M-pyrifera_M_contig8249:6676..6895Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 6677..6895 -
1622816731.461903-CDS-M-pyrifera_M_contig8249:7991..80771622816731.461903-CDS-M-pyrifera_M_contig8249:7991..8077Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 7992..8077 -
1692278145.4339848-CDS-M-pyrifera_M_contig8249:7991..80771692278145.4339848-CDS-M-pyrifera_M_contig8249:7991..8077Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 7992..8077 -
1622816731.4776053-CDS-M-pyrifera_M_contig8249:8635..87681622816731.4776053-CDS-M-pyrifera_M_contig8249:8635..8768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 8636..8768 -
1692278145.4453373-CDS-M-pyrifera_M_contig8249:8635..87681692278145.4453373-CDS-M-pyrifera_M_contig8249:8635..8768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 8636..8768 -
1622816731.4909656-CDS-M-pyrifera_M_contig8249:10515..106621622816731.4909656-CDS-M-pyrifera_M_contig8249:10515..10662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 10516..10662 -
1692278145.4536765-CDS-M-pyrifera_M_contig8249:10515..106621692278145.4536765-CDS-M-pyrifera_M_contig8249:10515..10662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8249 10516..10662 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.5029051-UTR-M-pyrifera_M_contig8249:10662..106801622816731.5029051-UTR-M-pyrifera_M_contig8249:10662..10680Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8249 10663..10680 -
1692278145.4621692-UTR-M-pyrifera_M_contig8249:10662..106801692278145.4621692-UTR-M-pyrifera_M_contig8249:10662..10680Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8249 10663..10680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8249.19280.1

>prot_M-pyrifera_M_contig8249.19280.1 ID=prot_M-pyrifera_M_contig8249.19280.1|Name=mRNA_M-pyrifera_M_contig8249.19280.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MARATRIGRRGDPPAPIMAVGLPREEAVGPRGERPPAAAAESERQEMDGG
EGGALVLDARDDATTRVRRIPGGVLQSAPRWVEDQHGAPHDKIPLDIDPE
AGKDQVGARRDKGHRYLRFETQAGRGEDTPPARPSAGSGANDFMFGFGLE
DGSVAAEGDVLVLDSRSAAADGVSGAGGGVPQLGKQAPRWPDERG
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mRNA from alignment at M-pyrifera_M_contig8249:6677..10680-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8249.19280.1 ID=mRNA_M-pyrifera_M_contig8249.19280.1|Name=mRNA_M-pyrifera_M_contig8249.19280.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4004bp|location=Sequence derived from alignment at M-pyrifera_M_contig8249:6677..10680- (Macrocystis pyrifera P11B4 male)
AGGTACGAGACGGAAGACATGGCTCGGGCAACGCGAATCGGACGGAGGGG
CGACCCTCCAGCTCCCATTATGGCCGTGGGTTTGCCGCGAGAGGAGGCCG
TAGGTCCCAGGGGAGAGAGGCCGCCGGCGGCGGCGGCTGAATCGGAACGG
CAAGAAATGGACGGGGTGAGGAGAGATGAACGGAACTTCAAAAAATGGGT
TGGTGTGGTGTGACGGACTGGGTGAGGTTAATTAATTAATAGATTAACCA
ACTAGCAATAAGTTAATGGCTGGAGTTAGCACGGTGTTCGCGAACAATTT
GTATTACGCGGGACCATAGTAAATAGGACCAAATATAGTTAGTAAAAATA
GGTAAATACACAGTTTTTTTGTATACCATAGGTCCTATTAACTATGGACC
CCCGTAATAGTCTGTTTTCCTACCAGGTACCACTCTGTCCCTGTATATAA
GGACCCTTTTCATTATATTATGTAGTCCAAACGTTTCTTGTTTTTAGGTA
CGGATTGGTACAGAACAGAAAATCCTATCCCACGAAAAAAAGCATTGCCG
TGGGAAAAAAGTGACCAAAATGACGTTTTTAACCTACAGGACTCTCGGGT
CGGATACAAATCCGTGGGACGGTTAGCAAAACAGGTGCAACCCCCGATTG
GCTGCATGGCGGTTTTGGATTTACTTGTTCAACCAACCAATCAGCTCCTC
GTGCTCGTCGGTTTCAAATGTTTTTACATCCCAACCGAATTGGATTGTAG
CCAACACCCTACGTACGCACTGTAGTGCAACAACAATATTTGTTTTTTTT
CAAAGGCGATAGACCCTACATCTTCGCTTCACGATCTCCGTTTCAGATTT
AAATGCGTACACGGTGGTATGAGGTCTTACTCCAGACGGAAACCTATGCG
TAAACTCTTAGGAATACCGGGGTGGCAAACTTCAAGATACGGTTCGAAGA
CACTAGTTTATCTCAACCACAGGCACACGATATAGAAGAACAAGTGACAT
TAATTAGTGCCATTACCTAGCATGGTATCGGGAATACGACGGTGCTTTCC
TTTTATTCAGCTTGTTTTCGCGCTTCTCCCGTTTTGTTATCACTACGAAG
TCATCAAGAATGGGTGCGGTAACGTCACAAAATTGGCTGGTCGCGGCATG
TGTTTCTCTTGTTTCCATGGTCATCATTAATAGGTACGGTACGTCGCCAA
GGCTTGGAAGGTGAGTTTTAGCGTTTATCTTGATTTCGTGGTCATCCCTA
GTAAGAGCGGCGGGTCATTAAGTCAGTGTGCAAGTTATTCGCAGGACAGA
ATATGTGTGCGAAAGCGTACGTCGTTTCGACTCTCGGTGTCTAACCAAGC
AGGGCAAGTGCACGTGAAAATCGAGGAGAACTCAAACAACACGAGAGTCC
CACTCTGAGATTGTTGTTTTTACGAATGCCACCAAGCTCTCCCTCCAGGT
CACCACCAAGAGACGTGTGCTTGGCGCTTGACTCTCCGAGCCGTTAGTTA
CTGCGTGGACGATGAGGATGACACATGCTGTGCTTTCGCCGTGGCGTAGA
ACACTAACCCCTTCATCCATTAATTCGTTTCCCTCCCCTCTCCCGCGCTG
GTACTGCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTCCCCCGCCCCTTCTCTGCGTTCCTACCTCCCCTGCCATG
CGGCTCGCCGAATACCTCACGGCACTTCGCGCTTGGCGCAAGCAATGTCT
GCTTGAGTCGGTGAAAACCCGATGGGCTCCATCCCGACATTGTAGGGATA
CGAGGGGCTATGGCCATACGACTACGGCCATGCATGATAATGAGTACCCC
CCCCGCCCCTCCCCGTCCTATCACCCCCCGAACACACGCACGTACTTCGA
CGCAAAATTAAGGGAGAGGGAGGCGCATTGGTGCTGGATGCGAGGGATGA
TGCGACTACCCGGGTCAGGCGGATCCCGGGAGGGGTCCTCCAATCGGCTC
CGCGATGGGTCGAAGATCAACACGGTGCGCCACACGACAAAATACGTCGC
TCGTACAGTTATAAGTAGTTACCTACGGTAAAAAAAAAAGAAAGACGCAG
AAACCATTTTTCTACCGATACAATAGCTACCCAAGTTCAAGTTGTGGAGA
CAGTTACCGATACCGGTATATTACAGCTAAACCCCAGGGGTTCGTTTCTA
CTATAACCTGGCGGAATATTGTTTGTGAAGTTTCAGGGGCTTTTCCAGTA
AAAATGTTGCTCCTGGTAGGTGATGTTCACCCGGAAGTGACCGCTTCCAT
CGGCGTACGAACGGACTCTACGGGTAATATAGCCGTCAACGTTGTTACTG
TTACTGCAAAATGTATACCATGCTAATCCTAAGTAGCTTGTGCCCAGAAA
CGTTGATGTAGTTGTTAACCCTTTCTACAGCAGTACTGTACCGTACATTC
CAAATGTTTACGTTCTTCTCCAGAACGAGTTAAGAGGTTGAACATCGATT
TTTGTTAACTCTCTGTGTGCTCTATGTATGCTCGTGTTCGGTATGTGGAT
TCCCACTGGCTACGAATGCCTCATTACGGCAGAATCCCCACGTGAAGGCC
AAGCCCTGGACATAGATCCCGAGGCAGGGAAGGACCAAGTGGGTGCCCGG
AGAGACAAGGGTCACCGCTACCTCCGGTTCGAAACCCAGGTGGGAAGATC
ATTTAGAAGAAGAACAAAAAAAACCAGTCAAGTGTATGCAATTATGCGTG
CGAATGGTGGACCAGTCCCGGCCTACACTCGTGTGTGTGCCCCGGAATCA
TATGCCGCTGTGGGCGGAAATACAAAGATCGTTTATACTCAAACGATGAC
GATCAAGTGGTCTATACATTTCCGGTCAGAGAATTCCTTGTATTGTCCAC
CCTGGACGCTATGTTCGTTTATATAGGATAGTCCACTGAGCTACTCAGCT
ACTGTAATTACGACTCGGTGGGGTAGTAGGTTATCGCTTCTGCAAAATAA
ATACGACGTAAGTTTTGTGAGTTCGACCCAGTCTCGACGTTATCTCCTAC
ATAAGGGTGGCGCCCAACCCTGCGGCGGTGGGGTACAAAAATAGAAGAAC
CACAGCAACTGTTCGGTATAGACGCTGCTTGCCCGTACGGGGCGATGGAA
GCCACCAACCAACCCCGGCGTGGTGTATAAAAACATAAAAGAAAAAAAAA
AAAGTCGTTCAGAATGTCGACGGATTCCGCCGCATGTACATGGAGATGAG
ACGGGTGGTGCTTCCAGCGACAATTGGCCCCCGTGATATTGAAATTCTGG
CACCAGCGAGAAATTTGCACGCTCATCGATAGCTCTATGTTTCTCCCGTT
TATCGCGAGCGAAAAGTGTAGGTCTATTTATTTATTTATTTCCCCATCCC
ATTTATTATCTTCGTCCTTCTTTTTTTTCTCCCTCCATTACGGGGGGCCA
TATTAAATAGGACCTACGGTACACACGAAAACCTATATATTTCACTATTT
TCACTAACCCTATTTGGTCCTGTTTACCAGGGTCCCCCGTGATAGTCGTA
CGAAACTCGTATCAAGAGCCACATCGTAGTAGGCCCTTCTCCCCCCTCCC
TCCCGCGGTATGTGCCTTTCATTCGTATCGCGAGGAGGGTCAGGGTTCAG
CAAATTTCGTCCCTCGTTGACTCGCGTCGAACCGATGCTTGAGACCGAGC
CAGCTGCATCATACAAACATATTCAGACCGCAACACCGAAAGCTCTACCC
CGCGTCTTGGTTTTCTGCTTCTCACAACATCTCAGGCTGGACGGGGGGAA
GACACCCCTCCGGCGCGACCTTCAGCCGGTAGTGGTGCGAACGATTTCAT
GTTCGGGTTTGGCCTCGAGGACGGATCGGTTGCGGCGGAAGGAGACGTCC
TGGTTCTTGACTCGCGGAGTGCCGCAGCTGACGGCGTTAGCGGCGCTGGG
GGAGGTGTGCCGCAGTTGGGGAAGCAGGCTCCGAGGTGGCCGGACGAGCG
CGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8249:6677..10680-

>mRNA_M-pyrifera_M_contig8249.19280.1 ID=mRNA_M-pyrifera_M_contig8249.19280.1|Name=mRNA_M-pyrifera_M_contig8249.19280.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig8249:6677..10680- (Macrocystis pyrifera P11B4 male)
ATGGCTCGGGCAACGCGAATCGGACGGAGGGGCGACCCTCCAGCTCCCAT
TATGGCCGTGGGTTTGCCGCGAGAGGAGGCCGTAGGTCCCAGGGGAGAGA
GGCCGCCGGCGGCGGCGGCTGAATCGGAACGGCAAGAAATGGACGGGATG
GCTCGGGCAACGCGAATCGGACGGAGGGGCGACCCTCCAGCTCCCATTAT
GGCCGTGGGTTTGCCGCGAGAGGAGGCCGTAGGTCCCAGGGGAGAGAGGC
CGCCGGCGGCGGCGGCTGAATCGGAACGGCAAGAAATGGACGGGGGAGAG
GGAGGCGCATTGGTGCTGGATGCGAGGGATGATGCGACTACCCGGGTCAG
GCGGATCCCGGGAGGGGTCCTCCAATCGGCTCCGCGATGGGTCGAAGATC
AACACGGTGCGCCACACGACAAAATACGGAGAGGGAGGCGCATTGGTGCT
GGATGCGAGGGATGATGCGACTACCCGGGTCAGGCGGATCCCGGGAGGGG
TCCTCCAATCGGCTCCGCGATGGGTCGAAGATCAACACGGTGCGCCACAC
GACAAAATACCCCTGGACATAGATCCCGAGGCAGGGAAGGACCAAGTGGG
TGCCCGGAGAGACAAGGGTCACCGCTACCTCCGGTTCGAAACCCAGCCCT
GGACATAGATCCCGAGGCAGGGAAGGACCAAGTGGGTGCCCGGAGAGACA
AGGGTCACCGCTACCTCCGGTTCGAAACCCAGGCTGGACGGGGGGAAGAC
ACCCCTCCGGCGCGACCTTCAGCCGGTAGTGGTGCGAACGATTTCATGTT
CGGGTTTGGCCTCGAGGACGGATCGGTTGCGGCGGAAGGAGACGTCCTGG
TTCTTGACTCGCGGAGTGCCGCAGCTGACGGCGTTAGCGGCGCTGGGGGA
GGTGTGCCGCAGTTGGGGAAGCAGGCTCCGAGGTGGCCGGACGAGCGCGG
GGCTGGACGGGGGGAAGACACCCCTCCGGCGCGACCTTCAGCCGGTAGTG
GTGCGAACGATTTCATGTTCGGGTTTGGCCTCGAGGACGGATCGGTTGCG
GCGGAAGGAGACGTCCTGGTTCTTGACTCGCGGAGTGCCGCAGCTGACGG
CGTTAGCGGCGCTGGGGGAGGTGTGCCGCAGTTGGGGAAGCAGGCTCCGA
GGTGGCCGGACGAGCGCGGG
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