mRNA_M-pyrifera_M_contig82471.19279.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82471.19279.1
Unique NamemRNA_M-pyrifera_M_contig82471.19279.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82471.19279.1 vs. uniprot
Match: A0A2E7KGV7_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KGV7_9PLAN)

HSP 1 Score: 131 bits (330), Expect = 6.360e-39
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 MLLLSGLRQQMKKHKDDLLVIVGGAGLFMFGFLDEGLAWFFKSSGVLMFLWGCATLYVNLKSSEQQ 198
            MLLLSGLRQQMKKHKDDLLVIVGGAGLF+FGFLDEGLAWFFKSSGVLMFLWGCATLYVNLKSSEQQ
Sbjct:    1 MLLLSGLRQQMKKHKDDLLVIVGGAGLFIFGFLDEGLAWFFKSSGVLMFLWGCATLYVNLKSSEQQ 66
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BLAST of mRNA_M-pyrifera_M_contig82471.19279.1 vs. uniprot
Match: A0A518A7B5_9PLAN (Uncharacterized protein n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A7B5_9PLAN)

HSP 1 Score: 112 bits (279), Expect = 6.040e-31
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 MLLLSGLRQQMKKHKDDLLVIVGGAGLFMFGFLDEGLAWFFKSSGVLMFLWGCATLYVNLKSSEQQ 198
            MLL +GLRQQMKKHK+DLLVIVGGAGLF+FGFLD GL W F++SGVL+FLWGCATLYVN+KS E Q
Sbjct:   17 MLLKTGLRQQMKKHKEDLLVIVGGAGLFLFGFLDPGLGWLFQASGVLLFLWGCATLYVNVKSEEPQ 82
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BLAST of mRNA_M-pyrifera_M_contig82471.19279.1 vs. uniprot
Match: A0A355GJ53_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GJ53_9PLAN)

HSP 1 Score: 68.6 bits (166), Expect = 7.950e-14
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    7 LLSGLRQQMKKHKDDLLVIVGGAGLFMFGFLDEGLAWFFKSSGVLMFLWGCATLYVNLKSSE 192
            +L+ L+  +KK+KDDL VIV GAG+  F  LD  L WF+ S+G ++ +WG ATL++NL+SSE
Sbjct:    1 MLTYLKLFIKKYKDDLFVIVAGAGMLYFATLDRELGWFWNSAGFVILIWGIATLWMNLRSSE 62
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82471.19279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KGV7_9PLAN6.360e-3998.48Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A518A7B5_9PLAN6.040e-3180.30Uncharacterized protein n=6 Tax=Gimesia panareensi... [more]
A0A355GJ53_9PLAN7.950e-1451.61Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82471contigM-pyrifera_M_contig82471:398..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size201
Cds size201
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.4130287-CDS-M-pyrifera_M_contig82471:397..5981622816731.4130287-CDS-M-pyrifera_M_contig82471:397..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82471 398..598 +
1692278145.4101276-CDS-M-pyrifera_M_contig82471:397..5981692278145.4101276-CDS-M-pyrifera_M_contig82471:397..598Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82471 398..598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82471.19279.1prot_M-pyrifera_M_contig82471.19279.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82471 398..598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82471.19279.1

>prot_M-pyrifera_M_contig82471.19279.1 ID=prot_M-pyrifera_M_contig82471.19279.1|Name=mRNA_M-pyrifera_M_contig82471.19279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MLLLSGLRQQMKKHKDDLLVIVGGAGLFMFGFLDEGLAWFFKSSGVLMFL
WGCATLYVNLKSSEQQ*
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mRNA from alignment at M-pyrifera_M_contig82471:398..598+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82471.19279.1 ID=mRNA_M-pyrifera_M_contig82471.19279.1|Name=mRNA_M-pyrifera_M_contig82471.19279.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=201bp|location=Sequence derived from alignment at M-pyrifera_M_contig82471:398..598+ (Macrocystis pyrifera P11B4 male)
ATGTTGCTCCTGTCGGGTCTGCGTCAGCAGATGAAAAAACATAAAGATGA
CCTGCTGGTGATTGTCGGTGGTGCCGGATTGTTTATGTTCGGTTTCCTGG
ATGAGGGTCTGGCCTGGTTTTTCAAGTCGTCGGGTGTGCTCATGTTTCTC
TGGGGCTGTGCGACCCTGTATGTGAATCTCAAATCGAGCGAACAGCAATA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82471:398..598+

>mRNA_M-pyrifera_M_contig82471.19279.1 ID=mRNA_M-pyrifera_M_contig82471.19279.1|Name=mRNA_M-pyrifera_M_contig82471.19279.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig82471:398..598+ (Macrocystis pyrifera P11B4 male)
ATGTTGCTCCTGTCGGGTCTGCGTCAGCAGATGAAAAAACATAAAGATGA
CCTGCTGGTGATTGTCGGTGGTGCCGGATTGTTTATGTTCGGTTTCCTGG
ATGAGGGTCTGGCCTGGTTTTTCAAGTCGTCGGGTGTGCTCATGTTTCTC
TGGGGCTGTGCGACCCTGTATGTGAATCTCAAATCGAGCGAACAGCAATA
AATGTTGCTCCTGTCGGGTCTGCGTCAGCAGATGAAAAAACATAAAGATG
ACCTGCTGGTGATTGTCGGTGGTGCCGGATTGTTTATGTTCGGTTTCCTG
GATGAGGGTCTGGCCTGGTTTTTCAAGTCGTCGGGTGTGCTCATGTTTCT
CTGGGGCTGTGCGACCCTGTATGTGAATCTCAAATCGAGCGAACAGCAAT
AA
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