mRNA_M-pyrifera_M_contig8245.19275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8245.19275.1
Unique NamemRNA_M-pyrifera_M_contig8245.19275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8245.19275.1 vs. uniprot
Match: D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 5.880e-81
Identity = 180/298 (60.40%), Postives = 207/298 (69.46%), Query Frame = 1 
Query:    1 SWSNLCVSRWRLCPEERHAEVWR--DD-----KALHEARALVSPPAPPPSWRQIYGRLHEELRVPKGAFSSSHMVIGKSCQKGLAVWIALSRRSNGMTGRSMMGNGSTGLRTTEVIGLRAVVQRVEEGPAARLHPGGFTVRRVKGLRACLLANAHGGCSRYSGGXXXXXXIGPYSSAVTTTAVFPSLPLVDERTWPRYTVNKGAAGGXXXXXXXXXXXXXXXXHHGSMGTGSGSGPWQICSRSAMAATAATPPPPLALNEFASVDFFIETPGCHTEADFLRLEACVDIRFSDARARSA 873
            +WS LCVSRWRL PE+RHAEVWR  DD     K    AR+ VSPPAPPP+W+ IYGRLH ++  P G F  SHMVIG+S Q+G+AVWIAL+RRSNGMTGRS+M  GSTGLRTTEVI LRAVVQRVEEGPA R+HP  F VRRV GLRA L  N H      SG XXXXXX             FP +   ++R  P++T+N+GAA  XXXXXXXXXXXXXXXX     G G  S  W   + +A A+ AA   PPLAL E+A+VDFFIE  GC TEADFLRLEACVD+  S A A +A
Sbjct:  386 NWSTLCVSRWRLGPEQRHAEVWRVPDDADGKGKXXXVARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPSHMVIGRSVQEGVAVWIALTRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEGPAVRVHPHAFKVRRVSGLRALL--NDH------SGXXXXXXXXXXXXXXXXXXGFFPPVSQGEDRFSPKFTINRGAAESXXXXXXXXXXXXXXXXXXRGAGAGVRSS-WSGTA-AATASPAAEATPPLALYEYAAVDFFIEAAGCPTEADFLRLEACVDVAVSGATASAA 673
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BLAST of mRNA_M-pyrifera_M_contig8245.19275.1 vs. uniprot
Match: A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 1.030e-76
Identity = 171/302 (56.62%), Postives = 200/302 (66.23%), Query Frame = 1 
Query:    1 SWSNLCVSRWRLCPEERHAEVWR--DDK---------ALHEARALVSPPAPPPSWRQIYGRLHEELRVPKGAFSSSHMVIGKSCQKGLAVWIALSRRSNGMTGRSMMGNGSTGLRTTEVIGLRAVVQRVEEGPAARLHPGGFTVRRVKGLRACLLANAHGGCSRYSGGXXXXXXIGPYSSAVTTTAVFPSLPLVDERTWPRYTVNKGAAGGXXXXXXXXXXXXXXXXHHGSMGTGSGSGPWQICSRSAMAATAATPPPPLALNEFASVDFFIETPGCHTEADFLRLEACVDIRFSDARARSA 873
            +WS LCVSRWRL PE+RHAEVWR  DD              AR+++SPPAPPP+W+ IYGRLH ++  P G F  SHMVIG+S Q+G+AVWIAL+RRSNGMTGRS+M  GSTGLRTTEVI LRAVVQRVEEGPA R+HP  F VRRV GLRA L  ++ G        XXXXXX             FP +    +R  P++T+N+GA   XXXXXXXXXXXXXXXX             W   + +A A+ AA   PPLAL E+A VDFFIE  GC TEADFLRLEACVD+  S A A +A
Sbjct:  241 NWSTLCVSRWRLGPEQRHAEVWRVPDDADGTGKXXXXXKGVARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPSHMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRTTEVIELRAVVQRVEEGPAVRVHPHAFKVRRVSGLRALLKDHSDGXXXXXX--XXXXXXXXXXXXXXXXXGFFPPVSQGKDRFSPKFTINRGAVESXXXXXXXXXXXXXXXXXXXXXXGAGVRSSWSGTAAAA-ASLAAEATPPLALYEYAVVDFFIEAAGCPTEADFLRLEACVDVAVSGAAASAA 539
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BLAST of mRNA_M-pyrifera_M_contig8245.19275.1 vs. uniprot
Match: A0A835YLV5_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.090e-10
Identity = 53/144 (36.81%), Postives = 69/144 (47.92%), Query Frame = 1 
Query:    7 SNLCVSRWRLC-PEERHAEVWRDDKALH--------EARALVSPPAPPPSWRQIYGRLHEELRVPKGAFSSSHM----------------VIGKSCQKGLAVWIALSRRSNGMTGRSMMGNGSTGLRTTEVIGLRAVVQRVEEG 363
            SN    R R C PE R   + R  +  H        +  AL +PP    SWR++Y  LH ELR+P GA   S                  VIG++   G  VW+AL RRSNGMT RS++   S  +R  EV+ LR V+Q +  G
Sbjct:  358 SNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPV---SWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVV-TPSGAMRAAEVVELRIVLQNIGVG 497
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8245.19275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR75_ECTSI5.880e-8160.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYB8_9PHAE1.030e-7656.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLV5_9STRA1.090e-1036.81BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8245contigM-pyrifera_M_contig8245:9103..11972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-06_004090.1
Exons3
Model size873
Cds size873
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8245.19275.1prot_M-pyrifera_M_contig8245.19275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8245 9103..11972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.2458622-CDS-M-pyrifera_M_contig8245:9102..96541622816731.2458622-CDS-M-pyrifera_M_contig8245:9102..9654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8245 9103..9654 -
1692278145.3363876-CDS-M-pyrifera_M_contig8245:9102..96541692278145.3363876-CDS-M-pyrifera_M_contig8245:9102..9654Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8245 9103..9654 -
1622816731.2642212-CDS-M-pyrifera_M_contig8245:10865..109611622816731.2642212-CDS-M-pyrifera_M_contig8245:10865..10961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8245 10866..10961 -
1692278145.348482-CDS-M-pyrifera_M_contig8245:10865..109611692278145.348482-CDS-M-pyrifera_M_contig8245:10865..10961Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8245 10866..10961 -
1622816731.2760644-CDS-M-pyrifera_M_contig8245:11747..119721622816731.2760644-CDS-M-pyrifera_M_contig8245:11747..11972Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8245 11748..11972 -
1692278145.3612883-CDS-M-pyrifera_M_contig8245:11747..119721692278145.3612883-CDS-M-pyrifera_M_contig8245:11747..11972Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8245 11748..11972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8245.19275.1

>prot_M-pyrifera_M_contig8245.19275.1 ID=prot_M-pyrifera_M_contig8245.19275.1|Name=mRNA_M-pyrifera_M_contig8245.19275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=291bp
SWSNLCVSRWRLCPEERHAEVWRDDKALHEARALVSPPAPPPSWRQIYGR
LHEELRVPKGAFSSSHMVIGKSCQKGLAVWIALSRRSNGMTGRSMMGNGS
TGLRTTEVIGLRAVVQRVEEGPAARLHPGGFTVRRVKGLRACLLANAHGG
CSRYSGGGGGGGGIGPYSSAVTTTAVFPSLPLVDERTWPRYTVNKGAAGG
GSGTGSGGGGVVAPPPHHGSMGTGSGSGPWQICSRSAMAATAATPPPPLA
LNEFASVDFFIETPGCHTEADFLRLEACVDIRFSDARARSA
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mRNA from alignment at M-pyrifera_M_contig8245:9103..11972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8245.19275.1 ID=mRNA_M-pyrifera_M_contig8245.19275.1|Name=mRNA_M-pyrifera_M_contig8245.19275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2870bp|location=Sequence derived from alignment at M-pyrifera_M_contig8245:9103..11972- (Macrocystis pyrifera P11B4 male)
AGCTGGAGCAACCTCTGCGTGTCTCGGTGGAGACTGTGCCCGGAAGAACG
TCACGCCGAGGTGTGGCGCGACGACAAGGCGCTCCACGAGGCGCGGGCAT
TGGTGTCGCCCCCCGCCCCTCCTCCTTCTTGGCGACAGATATACGGGCGC
CTCCACGAGGAGCTCCGTGTCCCGAAGGGGGCCTTTTCCTCCTCCCACAT
GGTCATCGGCAAGAGCTGCCAGAAGGTGTTTTTTTTCGTTACGAAAACGC
TTTTGGTTGGCAGTATGTTCCCTTGTTTTTAGTTTTTGAGCAAGGCAAAG
CGAGAGAGGGAGAGGGAAGCAAAGGGGAGGGGAGGAGAAGAGAGGAGAGG
GAGGGGAGGGAGGGTGTTATCATGTCATGCTTGGCCGTATGTAGTCATGT
GACCATAGACTCTAGCTTCCCTACAATGCCGGGCGGAGCATGTCGGGTTT
TCATCGACCAGGTATACATTGCTTGCACCAATTGCGAAAGAGGAGGGGGA
GCGGGTATTTGGCAAGTGTTGAGCTAGGTCCTTAGCGAAGCCTTAGCGAC
GTTGCAGCGAAGCCTTACCAAAGCTCGGGTGAAACCGTACCAAAGCGTTA
GCCAAGCCTTATCGAAGCCTCAGCACAACCTGGGGAGAACCTCAGCAAGC
CTGGGCGAACTCATAGCGTAGATTTGGCGAAATGCAGCGACGTCGTAGCG
AAGCCCCGAACCGCAGACAAGCCTTGATGATACGTTCGTAACGCCTGAGC
AAAGTCCTAGCAAAGCCGTAGCGAATCTTAGCGTGGCCTTAGCGACATCC
GTTGCCACGACATGGAGACACCTTCGCGAGGCCTCAGCCGCGATAGTCAA
GCCTCGGCCAGTCGTTAGCAAGGCCTGAGCGAATCCTGTGCAAGCCTTAA
CGAACCCCTTGCTTCCTTCCCTGTCGGCATGCCCCCCCCCCCCCTGGACA
TTTCTCCGCTCGATCTCGACGACGGTCGCCTGCCCGCCGTCCTGCCTGCT
TGCCTCTCCAGGGACTCGCTGTCTGGATCGCGCTCAGCCGCAGGAGTAAC
GGCATGACAGGGCGGTCCATGATGGGCAACGGCTCCACCGGTCTCCGGAC
GACTGAGGTGAGACGCTGAGACGCTTGCTACTGCCACGGTGGGCGGGGCT
CTTGTCGACAGCATGTTTTGTTGGAGTGCTTTGGCTGGACAAGCTGCGCG
GAAAGGGCGGGCTTGCCGTTCGGAAGTGGTCGGCGGTAGCAGCAGCAGTT
CGCACATCGGACAGGACATGATCTATCTACAGATAGATGATCTAGTTCCT
CAGCTGCCATTTTGAGAGGTTGTGCAGGATCTTCCTTAGGACATGATCTA
TCTACAGATAGATCATCTAGTTCCTCAGCTGCCGTTGTGAGAGGTTGTGC
AGGATCTTCCTTATAGGACAGATAGATCACACCCAGGAAACATGTGCTGC
TGCAGATCGCGTAGATGATACGGCTCCGAATCCCACCCGGCAAGATGAGC
TGTGTATAATGCAAGACCGCGAATAGATCTATCTGCCTTCAATGAACTAG
ACCATCAAGTGGGAATGATCTGAATGATCTGCATGATCTGTGCATTATCT
GTCTGTCCGAGGTGTGCGTTATAGATGCTGCTGCTGCTGCTGGTTGTTGA
TGGAGGTGGTGGCGATGCTGGTGGTTGTTCCCCCGTTCGACCTTTGGTCA
CCCTAGATTATTGTCCTACGTCGATGGTTTTTTTGTTTTGCCGTGACCGT
TGGGAGGGTGCCACGCACGGGCTGCCGCCCGCCGTAGAGTGCCCCGGGCG
GCAGTGTTCCGCCGACGGCGGGAGCTGGCAAAGATGGAGTGGCTCGAAAA
CGTTTCAACGCTGACTGACGTTTGAGTGCACAGGGCGGCGCTATGATACC
GGCTGCTGCGGGACCCTCATGAGTATCAGCCCTTGCGACCACGCGCGATG
GGGTGGTGTAATGGTCTTGTTGGGCTCTGCTCATTGGGCTACGTGTCCGC
GTAAAATCGCGGAAGTGCGGCATGTTGTCGTACTTCGTCCTCGGTGTGAA
AACCGGTGGCCGTGGGCACGCCGCGCCGCGACTGTTGACCCGAACATCAG
ACAGATCTGTTATCCTACTCTTTACCCACCCGCGTAACTGAAGTGGGTGT
ACATCTAAATGTGTCCACCGCACGAAGTTATTTGTTTACTCATTTTTTGT
CGTTCAAGCCCAATGCCGTTGCTTGTCCGTCATCCCTCTTCACCGCATTA
ACCCACCGCCGCTGCCGCCGCCACCACGCCGTATGCCACACTGTTTCCGT
GTGTGACATGCGCGACAGGTAATCGGGCTGAGAGCCGTGGTGCAGCGTGT
CGAAGAGGGCCCCGCCGCTCGCCTCCACCCTGGCGGCTTCACGGTACGCC
GGGTCAAGGGGCTCCGCGCCTGCCTCCTCGCCAACGCTCATGGCGGCTGC
AGCCGCTACAGCGGCGGCGGTGGTGGCGGCGGAGGTATTGGACCCTACTC
GAGCGCGGTCACCACCACCGCGGTGTTCCCTTCGCTGCCTCTGGTCGACG
AACGCACCTGGCCGAGGTACACCGTGAACAAGGGCGCCGCCGGTGGTGGC
AGTGGTACCGGCAGCGGCGGCGGCGGGGTGGTTGCTCCCCCTCCGCACCA
CGGTAGCATGGGGACGGGTTCAGGGTCAGGACCTTGGCAGATTTGTTCGC
GCTCGGCGATGGCGGCGACGGCGGCGACGCCGCCGCCGCCGCTGGCTCTG
AACGAGTTCGCGTCTGTAGATTTTTTCATCGAGACCCCTGGATGCCACAC
CGAAGCTGATTTCCTCCGCCTCGAGGCTTGCGTTGACATCAGGTTTTCGG
ACGCGAGGGCAAGGTCGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8245:9103..11972-

>mRNA_M-pyrifera_M_contig8245.19275.1 ID=mRNA_M-pyrifera_M_contig8245.19275.1|Name=mRNA_M-pyrifera_M_contig8245.19275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1746bp|location=Sequence derived from alignment at M-pyrifera_M_contig8245:9103..11972- (Macrocystis pyrifera P11B4 male)
AGCTGGAGCAACCTCTGCGTGTCTCGGTGGAGACTGTGCCCGGAAGAACG
TCACGCCGAGGTGTGGCGCGACGACAAGGCGCTCCACGAGGCGCGGGCAT
TGGTGTCGCCCCCCGCCCCTCCTCCTTCTTGGCGACAGATATACGGGCGC
CTCCACGAGGAGCTCCGTGTCCCGAAGGGGGCCTTTTCCTCCTCCCACAT
GGTCATCGGCAAGAGCTGCCAGAAGAGCTGGAGCAACCTCTGCGTGTCTC
GGTGGAGACTGTGCCCGGAAGAACGTCACGCCGAGGTGTGGCGCGACGAC
AAGGCGCTCCACGAGGCGCGGGCATTGGTGTCGCCCCCCGCCCCTCCTCC
TTCTTGGCGACAGATATACGGGCGCCTCCACGAGGAGCTCCGTGTCCCGA
AGGGGGCCTTTTCCTCCTCCCACATGGTCATCGGCAAGAGCTGCCAGAAG
GGACTCGCTGTCTGGATCGCGCTCAGCCGCAGGAGTAACGGCATGACAGG
GCGGTCCATGATGGGCAACGGCTCCACCGGTCTCCGGACGACTGAGGGAC
TCGCTGTCTGGATCGCGCTCAGCCGCAGGAGTAACGGCATGACAGGGCGG
TCCATGATGGGCAACGGCTCCACCGGTCTCCGGACGACTGAGGTAATCGG
GCTGAGAGCCGTGGTGCAGCGTGTCGAAGAGGGCCCCGCCGCTCGCCTCC
ACCCTGGCGGCTTCACGGTACGCCGGGTCAAGGGGCTCCGCGCCTGCCTC
CTCGCCAACGCTCATGGCGGCTGCAGCCGCTACAGCGGCGGCGGTGGTGG
CGGCGGAGGTATTGGACCCTACTCGAGCGCGGTCACCACCACCGCGGTGT
TCCCTTCGCTGCCTCTGGTCGACGAACGCACCTGGCCGAGGTACACCGTG
AACAAGGGCGCCGCCGGTGGTGGCAGTGGTACCGGCAGCGGCGGCGGCGG
GGTGGTTGCTCCCCCTCCGCACCACGGTAGCATGGGGACGGGTTCAGGGT
CAGGACCTTGGCAGATTTGTTCGCGCTCGGCGATGGCGGCGACGGCGGCG
ACGCCGCCGCCGCCGCTGGCTCTGAACGAGTTCGCGTCTGTAGATTTTTT
CATCGAGACCCCTGGATGCCACACCGAAGCTGATTTCCTCCGCCTCGAGG
CTTGCGTTGACATCAGGTTTTCGGACGCGAGGGCAAGGTCGGCGGTAATC
GGGCTGAGAGCCGTGGTGCAGCGTGTCGAAGAGGGCCCCGCCGCTCGCCT
CCACCCTGGCGGCTTCACGGTACGCCGGGTCAAGGGGCTCCGCGCCTGCC
TCCTCGCCAACGCTCATGGCGGCTGCAGCCGCTACAGCGGCGGCGGTGGT
GGCGGCGGAGGTATTGGACCCTACTCGAGCGCGGTCACCACCACCGCGGT
GTTCCCTTCGCTGCCTCTGGTCGACGAACGCACCTGGCCGAGGTACACCG
TGAACAAGGGCGCCGCCGGTGGTGGCAGTGGTACCGGCAGCGGCGGCGGC
GGGGTGGTTGCTCCCCCTCCGCACCACGGTAGCATGGGGACGGGTTCAGG
GTCAGGACCTTGGCAGATTTGTTCGCGCTCGGCGATGGCGGCGACGGCGG
CGACGCCGCCGCCGCCGCTGGCTCTGAACGAGTTCGCGTCTGTAGATTTT
TTCATCGAGACCCCTGGATGCCACACCGAAGCTGATTTCCTCCGCCTCGA
GGCTTGCGTTGACATCAGGTTTTCGGACGCGAGGGCAAGGTCGGCG
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