mRNA_M-pyrifera_M_contig82432.19274.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82432.19274.1
Unique NamemRNA_M-pyrifera_M_contig82432.19274.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82432.19274.1 vs. uniprot
Match: A0A5A8E085_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E085_CAFRO)

HSP 1 Score: 172 bits (435), Expect = 6.850e-45
Identity = 112/312 (35.90%), Postives = 157/312 (50.32%), Query Frame = 1
Query:    4 REVTLTNELGVALTFALDVQGPFVLERVSTRAPRVPPGEADLTDTLRRLQSEKLRLFTLSPRSNLTAIVRFDP----SRAPR---------------RGDSSSSTSSASSILPGAHGTAPEQWHGNLRVRFAAGTIQVVHLRAVIARPQVVAHPPVLDLGRTHAEASVVSELHISNPSEVTADWSIVHIPWPKRRPKVR--------------GGSKD--------VHDDPTVFGFSLRSGALPGPTVPLETADGGLLRTGKSGGEQTQPQLIGVRFAPGGKVGLFRSKFRIRCRGGEPFDFVAQAYATHDE 816
            R +TL+N   ++L F ++V+GPF LERV T A   P   ADLT T+R L+S  +++  L PR+N+   VRFDP    + AP                 G +S S  +  + +P + G    +  G+L + F  G +Q V L A + RP+V+A PPV + G        V  L + NP+ V ADW++ H+P P  R +V               G   D        V DDPTVFGFS   G LPGPTV LE A        +  G   QP  +GVRFAP  +  L++ +FR+  RGG+PF+ +     TH+E
Sbjct: 1043 RSLTLSNAFDLSLRFGVEVEGPFRLERVHTAAKPAPTAGADLTSTIRGLESRGVKVLALPPRANVVVDVRFDPRLVAAAAPSGLAASGAGGAGTKALAGTASLSKEARQAGVPQSKGALSTEHRGSLLLTFVNGEVQRVGLAAQVLRPKVIAAPPVTNFGVVRCGTPRVLRLVVGNPTVVPADWALRHVPAPAPRERVAINAGALGLKGTPGLGADDDAAGPSPAVVVDDPTVFGFSSHKGLLPGPTVDLEVAPRAAPL--RESGAAPQPVTLGVRFAPK-EPALYKCRFRVEVRGGQPFEVLLMGQGTHEE 1351          
BLAST of mRNA_M-pyrifera_M_contig82432.19274.1 vs. uniprot
Match: A0A5A8DXU9_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DXU9_CAFRO)

HSP 1 Score: 172 bits (435), Expect = 7.440e-45
Identity = 112/312 (35.90%), Postives = 157/312 (50.32%), Query Frame = 1
Query:    4 REVTLTNELGVALTFALDVQGPFVLERVSTRAPRVPPGEADLTDTLRRLQSEKLRLFTLSPRSNLTAIVRFDP----SRAPR---------------RGDSSSSTSSASSILPGAHGTAPEQWHGNLRVRFAAGTIQVVHLRAVIARPQVVAHPPVLDLGRTHAEASVVSELHISNPSEVTADWSIVHIPWPKRRPKVR--------------GGSKD--------VHDDPTVFGFSLRSGALPGPTVPLETADGGLLRTGKSGGEQTQPQLIGVRFAPGGKVGLFRSKFRIRCRGGEPFDFVAQAYATHDE 816
            R +TL+N   ++L F ++V+GPF LERV T A   P   ADLT T+R L+S  +++  L PR+N+   VRFDP    + AP                 G +S S  +  + +P + G    +  G+L + F  G +Q V L A + RP+V+A PPV + G        V  L + NP+ V ADW++ H+P P  R +V               G   D        V DDPTVFGFS   G LPGPTV LE A        +  G   QP  +GVRFAP  +  L++ +FR+  RGG+PF+ +     TH+E
Sbjct: 2354 RSLTLSNAFDLSLRFGVEVEGPFRLERVHTAAKPAPTAGADLTSTIRGLESRGVKVLALPPRANVVVDVRFDPRLVAAAAPSGLAASGAGGAGTKALAGTASLSKEARQAGVPQSKGALSTEHRGSLLLTFVNGEVQRVGLAAQVLRPKVIAAPPVTNFGVVRCGTPRVLRLVVGNPTVVPADWALRHVPAPAPRERVAINAGALGLKGTPGLGADDDAAGPSPAVVVDDPTVFGFSSHKGLLPGPTVDLEVAPRAAPL--RESGAAPQPVTLGVRFAPK-EPALYKCRFRVEVRGGQPFEVLLMGQGTHEE 2662          
BLAST of mRNA_M-pyrifera_M_contig82432.19274.1 vs. uniprot
Match: W2R864_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2R864_PHYPN)

HSP 1 Score: 131 bits (330), Expect = 7.270e-31
Identity = 98/289 (33.91%), Postives = 142/289 (49.13%), Query Frame = 1
Query:    1 RREVTLTNELGVALTFALDVQGPFVLERVSTRAPRVPPGEADLTDTLRRLQSE-KLRLFTLSPRSNLTAIVRFDPSRAPRRGDSSSSTSSASSILPGAHGTAPEQWHGNLRVRFAAGTIQVVHLRAVIARPQVVAHPPVLDLGRTHAEASVVSELHISNPSEVTADWSIVHIPWPKRRPKVRGGSKDVH-----DDPTVFGFSLRSGALPGPTVPLETADGGLLRTGKS------GGEQTQPQL-----IGVRFAPGGKVGLFRSKFRIRCRGGEPFDFVAQAYATHDE 816
            RRE+ L N LG  +TF L+  GPF +    + APR P   ADL    RR  ++ +  +F L P+ ++   +RF PS +     + +ST  + S LP        Q++G LRV+FA  ++Q++ L AV+ RP +V  P V   GR H  AS    L ++NP+ V A +SI H+P PK   + +      H     DDP VF F+  SG L GPT  L++A GG L T  S          T P +     + V F P      ++S+FR   + G  F+   +     DE
Sbjct: 1758 RRELFLVNRLGSRVTFRLECDGPFAVAHADSLAPRHPLSMADLPAAHRRSTAQGESYMFMLPPQMSVRIDLRFLPSASLL---TDTSTLKSKSSLPQQQ-PLHTQFNGELRVKFATKSVQIIRLAAVVLRPAIVVSPSVFFFGRVHLSASRCVILRLANPTVVPAQFSIQHVPRPKPVSRAQQQKMSQHHAHLTDDPAVFTFAQLSGELQGPTTTLKSA-GGYLSTTDSIKDLLENATTTHPLVHAPLELRVEFHPRESGRRYKSRFRFNVQHGRDFEVALEGIGHLDE 2041          
BLAST of mRNA_M-pyrifera_M_contig82432.19274.1 vs. uniprot
Match: A0A7S3UW56_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW56_HETAK)

HSP 1 Score: 107 bits (267), Expect = 2.260e-23
Identity = 92/296 (31.08%), Postives = 134/296 (45.27%), Query Frame = 1
Query:    4 REVTLTNELGVALTFALDVQGPFVLERVSTRAPRVPPGEADLTDTLRRLQSEKLRLFTLSPRSNLTAIVRFDPSRAPRRGDSSSSTSSASSILPGAHGTAPEQWHGNLRVRFAAGTIQVVHLRAVIARPQVVAHPPVLDLGRTHAEASVVS-ELHISNPSEVTADWSIVHIP---WPKRRPKVRGGSKDVHDDPTVFGFSLRSGALPGPTVPLETA-----------DGGLLRT----------GKSGGEQTQPQLIGVRFAPGGKVGLFRSKFRIRCRGGEPFDFVAQAYATHDE 816
            R++ LTN   V LTF L   GPF +      AP  P  +   T +L    +E   ++TL P  N+   + F  + A +    +++ S+   I      T  EQ +G++ V F+ G  Q + L   I RP +V  P     G        VS  L ISNP+EV A+W+++H+P   + K R    GG     D P VF FS + G L GPT+PL+TA           D  + +           G+    Q  P  + V F P   V  + S+FR++   GE FDFV     T++E
Sbjct:   71 RQLVLTNRQTVPLTFTLATAGPFRVLSAHCLAPPHPLQQTLFTTSLGGKAAEG-EIYTLPPGDNVVVDLGFLANAASQTLAGTAALSNNKPI------TLMEQVNGSMTVTFSTGCTQQIDLTGNILRPMLVCSPSKYHFGIGMVGGDGVSIYLSISNPTEVEANWNLIHVPSKTFTKSRLAGLGGMVQNTDHPDVFEFSTKQGTLAGPTMPLQTAAVCLPTDVNRADQAVFKQTITTLKWHQPGEKEEAQKAPFSLNVSFRPLENV-EYSSRFRLQVANGEGFDFVLSGKGTYEE 358          
BLAST of mRNA_M-pyrifera_M_contig82432.19274.1 vs. uniprot
Match: A0A7S1CKI7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKI7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.280e-18
Identity = 54/159 (33.96%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  418 DLGRTHAEASVVSELHISNPSEVTADWSIVHIPWPKRRPKV-------------------------RGGSKDVH-DDPTVFGFSLRSGALPGPTVPLETADGGLLRTGKSGGEQTQPQLIGVRFAPGGKVGLFRSKFRIRCRGGEPFDFVAQAYATHDE 816
            + G  H E     E+ ++NP+EV A+W +VH+P P  +P+V                          G +K V  DDP VF FS+R G L GPT PL+ A+   LRT   GG  +   ++ V F P   V  ++S+FR + R GE FD V + + ++ E
Sbjct:    1 NFGHCHTEKVKTKEVFLANPTEVEAEWKVVHVPAPPPKPRVTIDVSALGLEGIKGIDLQALSGAAPEGAAKIVEEDDPDVFDFSVRGGTLTGPTAPLQVAETLELRTSDKGGRTSLLPIV-VTFNPRENV-HYKSRFRFQVRKGEAFDLVLRGHGSYME 157          
BLAST of mRNA_M-pyrifera_M_contig82432.19274.1 vs. uniprot
Match: A0A0V0R7N7_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R7N7_PSEPJ)

HSP 1 Score: 64.7 bits (156), Expect = 4.790e-8
Identity = 73/306 (23.86%), Postives = 131/306 (42.81%), Query Frame = 1
Query:    4 REVTLTNELGVALTFALDVQGPFVLERVSTRAPRVPPGEADLTDTLRRLQSEK--LRLFTLSPRSNLTAIVRFDPSRAPRRGDSSSSTSSASSILPGAHGTAPEQW--------HGNLRVRFAAGTIQVVHLRAVIARPQV----VAHPPVL-----DLGRTHAEASVVSELHISNPSEVTADWSIVHIPWPKRRPKVRGGS--------KDVH---DDPTVFGFSLRSGALPGPTVPL----ETADGGLLRTGKS-GGEQTQPQLIGVRFAPGGKVGLFRSKFRIRCRGGEPFDFVAQAYATHDE 816
            +++ L N+    + F L++ GPF L +  T +P     + +L    + L S K   +L ++S ++N   +    P +  +     +S         G      E W         G L + F+ G  Q + L  ++ RP +    V H   +     D G  H        +++SN S+V A+W + ++    +   ++  S        K+ H   D+  VF FS+ SG L GP+VP+    +T+    ++T K    +   PQ I + F P   + L++SKFRI    G   + + +   T++E
Sbjct: 1315 KKICLVNKQASNMIFNLEIYGPFKLVQTCTNSP----AKYELAQNSQLLSSSKGMQKLKSISQKNNSQNLAIIKPVQT-QFNLVPNSNLEIEIFFEGPETDDYEHWPMVEKEYKFGALNLFFSNGDEQNIDLEGLLLRPAIKLNTVGHEDFIGAEEQDFGTVHINNKKTISVYLSNNSKVPANWKLNNV----KIKSIKNISDLTQTLKEKENHAKTDEADVFEFSIASGVLYGPSVPVRSLPDTSALPNIKTNKDISRDNLFPQQILINFRPKKNI-LYKSKFRITVEEGPYVELIVKGRGTYEE 1610          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82432.19274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8E085_CAFRO6.850e-4535.90Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8DXU9_CAFRO7.440e-4535.90Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
W2R864_PHYPN7.270e-3133.91Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
A0A7S3UW56_HETAK2.260e-2331.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1CKI7_9STRA2.280e-1833.96Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0V0R7N7_PSEPJ4.790e-823.86Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82432contigM-pyrifera_M_contig82432:23..910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog4787.PITG_09311T0
Preferred nameDLEC1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008285,GO:0042127,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0065007
EggNOG free text desc.negative regulation of cell proliferation
EggNOG OGs28IDE@1,2QQQ5@2759,3QES4@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size816
Cds size816
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.1953244-CDS-M-pyrifera_M_contig82432:22..2951622816731.1953244-CDS-M-pyrifera_M_contig82432:22..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82432 23..295 -
1692278145.3105414-CDS-M-pyrifera_M_contig82432:22..2951692278145.3105414-CDS-M-pyrifera_M_contig82432:22..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82432 23..295 -
1622816731.209635-CDS-M-pyrifera_M_contig82432:367..9101622816731.209635-CDS-M-pyrifera_M_contig82432:367..910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82432 368..910 -
1692278145.3236372-CDS-M-pyrifera_M_contig82432:367..9101692278145.3236372-CDS-M-pyrifera_M_contig82432:367..910Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82432 368..910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82432.19274.1prot_M-pyrifera_M_contig82432.19274.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82432 23..910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82432.19274.1

>prot_M-pyrifera_M_contig82432.19274.1 ID=prot_M-pyrifera_M_contig82432.19274.1|Name=mRNA_M-pyrifera_M_contig82432.19274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=272bp
RREVTLTNELGVALTFALDVQGPFVLERVSTRAPRVPPGEADLTDTLRRL
QSEKLRLFTLSPRSNLTAIVRFDPSRAPRRGDSSSSTSSASSILPGAHGT
APEQWHGNLRVRFAAGTIQVVHLRAVIARPQVVAHPPVLDLGRTHAEASV
VSELHISNPSEVTADWSIVHIPWPKRRPKVRGGSKDVHDDPTVFGFSLRS
GALPGPTVPLETADGGLLRTGKSGGEQTQPQLIGVRFAPGGKVGLFRSKF
RIRCRGGEPFDFVAQAYATHDE
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mRNA from alignment at M-pyrifera_M_contig82432:23..910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82432.19274.1 ID=mRNA_M-pyrifera_M_contig82432.19274.1|Name=mRNA_M-pyrifera_M_contig82432.19274.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig82432:23..910- (Macrocystis pyrifera P11B4 male)
CGTCGTGAAGTGACTCTAACGAATGAGCTTGGTGTTGCATTGACATTTGC ACTTGATGTGCAAGGTCCATTTGTTCTTGAACGCGTTTCTACACGTGCTC CTCGTGTTCCACCAGGTGAAGCTGACCTCACCGACACCCTTCGACGTTTG CAATCTGAAAAATTGCGACTCTTTACACTGTCTCCTCGCTCAAACCTGAC AGCAATTGTTCGTTTTGACCCATCACGAGCACCAAGACGTGGTGATTCAT CCTCATCCACTTCGTCTGCGTCGTCAATCCTGCCAGGAGCACATGGAACT GCTCCAGAACAATGGCATGGAAATTTGAGAGTGCGTTTCGCTGCTGGAAC GATTCAAGTTGTCCATCTTCGAGCAGTGATTGCACGACCACAAGTAGTAG CACATCCTCCTGTCCTTGATCTTGGTCGAACTCATGCAGAAGCTTCAGTT GTGTCCGAATTACACATATCAAACCCATCAGAAGTAACAGCAGACTGGAG TATTGTCCATATTCCATGGCCAAAACGGCGACCAAAAGTTCGAGTTGATG TTGCTGCTCTCGGGATTGCATCTGCCAAACTTCCCGGTGCATCTGGAGAT GATGATGAAGATGAGGGTGGTAGTAAAGACGTGCATGATGATCCAACGGT GTTTGGATTCTCATTACGTTCTGGTGCCTTGCCAGGCCCTACAGTGCCTC TTGAAACTGCAGATGGTGGATTGTTGCGAACAGGAAAGAGTGGTGGGGAG CAAACACAACCTCAATTGATTGGAGTACGCTTTGCTCCAGGTGGAAAGGT GGGCTTGTTTCGATCAAAGTTTCGTATTCGGTGTCGTGGAGGCGAACCGT TCGATTTTGTTGCCCAAGCATATGCCACACATGACGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82432:23..910-

>mRNA_M-pyrifera_M_contig82432.19274.1 ID=mRNA_M-pyrifera_M_contig82432.19274.1|Name=mRNA_M-pyrifera_M_contig82432.19274.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1632bp|location=Sequence derived from alignment at M-pyrifera_M_contig82432:23..910- (Macrocystis pyrifera P11B4 male)
CGTCGTGAAGTGACTCTAACGAATGAGCTTGGTGTTGCATTGACATTTGC
ACTTGATGTGCAAGGTCCATTTGTTCTTGAACGCGTTTCTACACGTGCTC
CTCGTGTTCCACCAGGTGAAGCTGACCTCACCGACACCCTTCGACGTTTG
CAATCTGAAAAATTGCGACTCTTTACACTGTCTCCTCGCTCAAACCTGAC
AGCAATTGTTCGTTTTGACCCATCACGAGCACCAAGACGTGGTGATTCAT
CCTCATCCACTTCGTCTGCGTCGTCAATCCTGCCAGGAGCACATGGAACT
GCTCCAGAACAATGGCATGGAAATTTGAGAGTGCGTTTCGCTGCTGGAAC
GATTCAAGTTGTCCATCTTCGAGCAGTGATTGCACGACCACAAGTAGTAG
CACATCCTCCTGTCCTTGATCTTGGTCGAACTCATGCAGAAGCTTCAGTT
GTGTCCGAATTACACATATCAAACCCATCAGAAGTAACAGCAGACTGGAG
TATTGTCCATATTCCATGGCCAAAACGGCGACCAAAAGTTCGACGTCGTG
AAGTGACTCTAACGAATGAGCTTGGTGTTGCATTGACATTTGCACTTGAT
GTGCAAGGTCCATTTGTTCTTGAACGCGTTTCTACACGTGCTCCTCGTGT
TCCACCAGGTGAAGCTGACCTCACCGACACCCTTCGACGTTTGCAATCTG
AAAAATTGCGACTCTTTACACTGTCTCCTCGCTCAAACCTGACAGCAATT
GTTCGTTTTGACCCATCACGAGCACCAAGACGTGGTGATTCATCCTCATC
CACTTCGTCTGCGTCGTCAATCCTGCCAGGAGCACATGGAACTGCTCCAG
AACAATGGCATGGAAATTTGAGAGTGCGTTTCGCTGCTGGAACGATTCAA
GTTGTCCATCTTCGAGCAGTGATTGCACGACCACAAGTAGTAGCACATCC
TCCTGTCCTTGATCTTGGTCGAACTCATGCAGAAGCTTCAGTTGTGTCCG
AATTACACATATCAAACCCATCAGAAGTAACAGCAGACTGGAGTATTGTC
CATATTCCATGGCCAAAACGGCGACCAAAAGTTCGAGGTGGTAGTAAAGA
CGTGCATGATGATCCAACGGTGTTTGGATTCTCATTACGTTCTGGTGCCT
TGCCAGGCCCTACAGTGCCTCTTGAAACTGCAGATGGTGGATTGTTGCGA
ACAGGAAAGAGTGGTGGGGAGCAAACACAACCTCAATTGATTGGAGTACG
CTTTGCTCCAGGTGGAAAGGTGGGCTTGTTTCGATCAAAGTTTCGTATTC
GGTGTCGTGGAGGCGAACCGTTCGATTTTGTTGCCCAAGCATATGCCACA
CATGACGAAGGTGGTAGTAAAGACGTGCATGATGATCCAACGGTGTTTGG
ATTCTCATTACGTTCTGGTGCCTTGCCAGGCCCTACAGTGCCTCTTGAAA
CTGCAGATGGTGGATTGTTGCGAACAGGAAAGAGTGGTGGGGAGCAAACA
CAACCTCAATTGATTGGAGTACGCTTTGCTCCAGGTGGAAAGGTGGGCTT
GTTTCGATCAAAGTTTCGTATTCGGTGTCGTGGAGGCGAACCGTTCGATT
TTGTTGCCCAAGCATATGCCACACATGACGAA
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