mRNA_M-pyrifera_M_contig82415.19270.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82415.19270.1
Unique NamemRNA_M-pyrifera_M_contig82415.19270.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A7Y5LJM9_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Ignavibacteriaceae bacterium TaxID=2651163 RepID=A0A7Y5LJM9_9BACT)

HSP 1 Score: 115 bits (289), Expect = 1.060e-25
Identity = 56/115 (48.70%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   28 SVTPTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTG 372
            S  P  QA+DV+ +   +N  TV  T+GNG+NR+++ K GS V+  PVDG++YTAN++F SGT++G+GNYV+YN +G+ V ++ L     Y+ A +E+ GS GSE YLT SP TG
Sbjct:  703 SAEPAGQAADVTFTAVGENEFTVNWTSGNGTNRIVLVKSGSAVNSNPVDGTSYTANTAFASGTQIGTGNYVVYNSTGSSVTVTGLNSGTTYHVAVYEFNGSGGSENYLTLSPATG 817          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A3D5H7X6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3D5H7X6_9BACT)

HSP 1 Score: 114 bits (284), Expect = 2.810e-25
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   25 PSVTPTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFT 384
            PS  PT+QAS+V  +  +  SM V  T GNG+ R++VA+ G PV FTP DG +Y ANS+F   T+LGSGN  +++ SGN + ++ L  N  Y+FA +E+ GS G+E YLTT P T    T
Sbjct:   44 PSAEPTLQASNVGFNTVMSGSMGVTWTNGNGAYRIVVARAGGPVSFTPTDGQSYPANSNFALATDLGSGNKAVFSGSGNSIAVTGLASNTTYHFAVYEFNGSGGTENYLTTFPATNSQAT 163          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: UPI001A9C0E5C (tandem-95 repeat protein n=2 Tax=Desulfonema limicola TaxID=45656 RepID=UPI001A9C0E5C)

HSP 1 Score: 114 bits (285), Expect = 3.800e-25
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 1
Query:   37 PTVQASDVSISEEIDNSMTVGLTT-GNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFTTGYAFEEISS 414
            PTVQAS +S S   +NS+TV  TT G+G+NR++V K GS +D  PVDG+TYTAN++F SG+++G+GNYV+YN +G+ V ++ L     YY A +E+ GS GSE YL   P TG   T   +   ++S
Sbjct: 1386 PTVQASGLSFSGITNNSLTVNWTTNGDGANRIVVMKPGSAIDANPVDGTTYTANATFGSGSQIGTGNYVVYNGTGSSVTVTGLTAGTTYYIAVYEFNGSGGSENYLNALPLTGFQATNSPSIISVTS 1512          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A2E9FZU1_9RHOB (Uncharacterized protein (Fragment) n=1 Tax=Thalassobius sp. TaxID=1979401 RepID=A0A2E9FZU1_9RHOB)

HSP 1 Score: 112 bits (281), Expect = 1.250e-24
Identity = 61/121 (50.41%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   31 VTPTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTEL--GSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFTT 387
            +TP+ QAS +S S    +S+ +  T G+G++R+++AK GS VD TP D  +YTANS+F SG+E+  GSGNYV+YN SGN   +S L  +  YYF  FEY GS G+EKYLTT+  TG+   T
Sbjct:  234 ITPSTQASSISFSNVGSSSLDLNWTNGDGTSRIVIAKAGSSVDDTPTDEYSYTANSTFGSGSEINAGSGNYVVYNGSGNSASISGLSPSTTYYFQVFEYNGSSGNEKYLTTT-NTGNPNNT 353          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A661ZBU9_9BACT (LTD domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661ZBU9_9BACT)

HSP 1 Score: 112 bits (280), Expect = 1.620e-24
Identity = 59/117 (50.43%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   37 PTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFTT 387
            PT  A+ ++ S     SMTVG T GNG+NR++VAK GS  D+TPVD +TY+AN+SF +GTELG+GNYV+YN +G+ V +++L     YYF  +EY  S GSE YL       D  TT
Sbjct:  432 PTTNATTMTFSSVTTTSMTVGWTDGNGANRIVVAKSGSAPDWTPVDANTYSANASFGTGTELGTGNYVVYNGTGSTVDITNLVGGTTYYFTVYEYNCSLGSEDYLVDEDALTDDETT 548          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A7S6MWW3_9BACT (Lamin tail domain-containing protein n=1 Tax=Ignavibacteriales bacterium TaxID=2049428 RepID=A0A7S6MWW3_9BACT)

HSP 1 Score: 112 bits (279), Expect = 2.220e-24
Identity = 56/117 (47.86%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   37 PTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFTT 387
            P+ QAS+V+ S       T+  T+GNG+ RL+V K GS VD  P DG TYTAN +F SGT++G+GNYV+YND+G+ V ++ L     Y+ A +EY G  GSE Y T+   TG   TT
Sbjct:  474 PSAQASNVTFSTISATGFTINWTSGNGTKRLVVVKSGSAVDTDPTDGVTYTANPAFGSGTQIGTGNYVVYNDNGSSVAVTGLTSGITYHVAVYEYNGGSGSENYRTSDEATGSQMTT 590          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A4P7PRZ8_9FLAO (Fibronectin type-III domain-containing protein n=1 Tax=Flavobacterium sangjuense TaxID=2518177 RepID=A0A4P7PRZ8_9FLAO)

HSP 1 Score: 108 bits (271), Expect = 2.610e-23
Identity = 53/116 (45.69%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   37 PTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFT 384
            P+ QA+ V+ +     + TV  T GNG+N +++ + GS V+ +PVDG TY + +SF +G+E+G+GN+VIY+ S N V ++ LQ N +YY A ++Y GS G+E YLTTSP TG+  T
Sbjct:  479 PSTQATSVNFTTVTSTTFTVNWTNGNGANHIVLIRSGSAVNSSPVDGVTYASINSFGAGSEIGTGNFVIYSGSSNTVSITGLQPNTNYYVAVYDYNGSGGTESYLTTSPATGNRTT 594          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A2S1QVK4_9FLAO (PKD domain-containing protein n=1 Tax=Flavobacterium album TaxID=2175091 RepID=A0A2S1QVK4_9FLAO)

HSP 1 Score: 107 bits (268), Expect = 6.530e-23
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   22 VPSVTPTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFT 384
            V S  PT  AS ++ S     S T G T GNG+NRL+V + GS V+  PVDG +YTA++ F SG++LG GNYV+YN + N V ++ L     YY + F++ GS G+E Y TTSP TG   T
Sbjct:  467 VLSTEPTTSASSIAFSNVTSISFTTGWTPGNGTNRLVVMRSGSAVNALPVDGVSYTASTVFASGSDLGGGNYVVYNGTSNSVTVTELSPTTTYYVSIFDFNGSGGTENYRTTSPLTGSRAT 587          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: A0A3E0ETR7_9FLAO (Uncharacterized protein n=1 Tax=Flavobacterium aquicola TaxID=1682742 RepID=A0A3E0ETR7_9FLAO)

HSP 1 Score: 107 bits (268), Expect = 6.530e-23
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   40 TVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFT 384
            TVQA+ V+ +     +  +  T GNG+N L++ K GS V+  PVDG  YTA +SF +G+E+G+GNYVIY+ S N V +S LQ N  YY A ++Y GS G+E YLTTSP +G+  T
Sbjct:  480 TVQATAVTFTTVTSTTFNINWTNGNGANHLVLIKSGSAVNSNPVDGIIYTAINSFGAGSEIGTGNYVIYSGSSNTVNVSGLQPNTAYYVAVYDYNGSGGTESYLTTSPASGNRTT 594          
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Match: UPI001CA6F29C (MopE-related protein n=1 Tax=Hanstruepera sp. NBU2968 TaxID=2873265 RepID=UPI001CA6F29C)

HSP 1 Score: 107 bits (267), Expect = 9.020e-23
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = 1
Query:   16 IEVPSVTPTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGSPVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHYYFAAFEYFGSEGSEKYLTTSPGTGDSFTT 387
            I  P+V PT+QAS  S       SMT+   +G+GSNR+++A++G  V+  P+DG TY+AN+SF  G+++GSGNYV+YN SGN V +++LQ    Y+FA FEY GS GSE YL   PG  DS +T
Sbjct:  142 IAAPTV-PTLQASFTSFVANA-TSMTLNFDSGDGSNRIVLAREGGAVNAEPIDGITYSANTSFPFGSQIGSGNYVVYNGSGNTVQVNNLQFGSTYHFAIFEYNGSSGSELYL--KPGDTDSEST 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82415.19270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5LJM9_9BACT1.060e-2548.70T9SS type A sorting domain-containing protein n=1 ... [more]
A0A3D5H7X6_9BACT2.810e-2547.50Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
UPI001A9C0E5C3.800e-2548.03tandem-95 repeat protein n=2 Tax=Desulfonema limic... [more]
A0A2E9FZU1_9RHOB1.250e-2450.41Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A661ZBU9_9BACT1.620e-2450.43LTD domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A7S6MWW3_9BACT2.220e-2447.86Lamin tail domain-containing protein n=1 Tax=Ignav... [more]
A0A4P7PRZ8_9FLAO2.610e-2345.69Fibronectin type-III domain-containing protein n=1... [more]
A0A2S1QVK4_9FLAO6.530e-2347.11PKD domain-containing protein n=1 Tax=Flavobacteri... [more]
A0A3E0ETR7_9FLAO6.530e-2348.70Uncharacterized protein n=1 Tax=Flavobacterium aqu... [more]
UPI001CA6F29C9.020e-2350.00MopE-related protein n=1 Tax=Hanstruepera sp. NBU2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82415contigM-pyrifera_M_contig82415:12..758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score102.1
Seed ortholog evalue4e-19
Seed eggNOG ortholog1121898.Q766_13660
KEGG koko:K21449
KEGG TC1.B.40.2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM SMP-30 Gluconolaconase
EggNOG OGs1HY1K@117743,2NSFX@237,4NFVP@976,COG1345@1,COG1345@2,COG2356@1,COG2356@2,COG2911@1,COG2911@2,COG3391@1,COG3391@2
COG Functional cat.N
Best tax levelFlavobacterium
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816731.0426004-CDS-M-pyrifera_M_contig82415:11..7581622816731.0426004-CDS-M-pyrifera_M_contig82415:11..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82415 12..758 -
1692278145.2122962-CDS-M-pyrifera_M_contig82415:11..7581692278145.2122962-CDS-M-pyrifera_M_contig82415:11..758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82415 12..758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82415.19270.1prot_M-pyrifera_M_contig82415.19270.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82415 12..758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82415.19270.1

>prot_M-pyrifera_M_contig82415.19270.1 ID=prot_M-pyrifera_M_contig82415.19270.1|Name=mRNA_M-pyrifera_M_contig82415.19270.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=249bp
GAKYGIEVPSVTPTVQASDVSISEEIDNSMTVGLTTGNGSNRLIVAKKGS
PVDFTPVDGSTYTANSSFESGTELGSGNYVIYNDSGNEVILSSLQENHHY
YFAAFEYFGSEGSEKYLTTSPGTGDSFTTGYAFEEISSLAMWLRADAGIA
DPSNGALVSAWADTAGSAAEATQGSSTLQPVFTTNALNGLPGVSFDGIDN
YLTLPTSSALGIQNSDYELFIVAKPANSTNVEFLFGGSATSNYEVHING
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mRNA from alignment at M-pyrifera_M_contig82415:12..758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82415.19270.1 ID=mRNA_M-pyrifera_M_contig82415.19270.1|Name=mRNA_M-pyrifera_M_contig82415.19270.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=747bp|location=Sequence derived from alignment at M-pyrifera_M_contig82415:12..758- (Macrocystis pyrifera P11B4 male)
GGTGCAAAATATGGTATTGAAGTCCCATCTGTTACTCCAACTGTTCAGGC ATCAGATGTATCAATTAGCGAAGAAATTGACAATTCTATGACGGTAGGGC TAACAACAGGAAATGGTTCAAACCGATTGATAGTAGCAAAAAAGGGATCT CCCGTTGATTTTACTCCGGTTGACGGTTCTACTTATACTGCAAACAGTTC CTTTGAATCGGGCACGGAGTTGGGGAGTGGAAATTATGTGATTTATAACG ATAGTGGAAACGAAGTCATACTTAGCAGTCTTCAGGAAAACCATCACTAT TACTTCGCGGCTTTCGAATACTTTGGTTCTGAGGGTAGTGAAAAATACCT GACAACATCTCCGGGAACAGGAGATAGTTTTACCACCGGTTACGCCTTTG AGGAAATCTCATCATTAGCCATGTGGTTACGAGCTGATGCGGGTATCGCA GACCCATCAAATGGGGCTTTGGTTTCTGCATGGGCAGACACTGCAGGTAG TGCGGCAGAAGCAACTCAAGGGTCATCAACACTGCAACCGGTATTTACAA CGAATGCTTTAAATGGGTTGCCCGGAGTTTCATTTGACGGAATTGATAAT TACCTCACCTTGCCAACTTCTTCAGCATTAGGAATTCAAAACTCAGATTA TGAGCTATTTATTGTAGCAAAACCGGCAAACTCGACAAATGTAGAATTTC TGTTTGGTGGATCTGCTACATCAAATTATGAAGTACATATAAACGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82415:12..758-

>mRNA_M-pyrifera_M_contig82415.19270.1 ID=mRNA_M-pyrifera_M_contig82415.19270.1|Name=mRNA_M-pyrifera_M_contig82415.19270.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1494bp|location=Sequence derived from alignment at M-pyrifera_M_contig82415:12..758- (Macrocystis pyrifera P11B4 male)
GGTGCAAAATATGGTATTGAAGTCCCATCTGTTACTCCAACTGTTCAGGC
ATCAGATGTATCAATTAGCGAAGAAATTGACAATTCTATGACGGTAGGGC
TAACAACAGGAAATGGTTCAAACCGATTGATAGTAGCAAAAAAGGGATCT
CCCGTTGATTTTACTCCGGTTGACGGTTCTACTTATACTGCAAACAGTTC
CTTTGAATCGGGCACGGAGTTGGGGAGTGGAAATTATGTGATTTATAACG
ATAGTGGAAACGAAGTCATACTTAGCAGTCTTCAGGAAAACCATCACTAT
TACTTCGCGGCTTTCGAATACTTTGGTTCTGAGGGTAGTGAAAAATACCT
GACAACATCTCCGGGAACAGGAGATAGTTTTACCACCGGTTACGCCTTTG
AGGAAATCTCATCATTAGCCATGTGGTTACGAGCTGATGCGGGTATCGCA
GACCCATCAAATGGGGCTTTGGTTTCTGCATGGGCAGACACTGCAGGTAG
TGCGGCAGAAGCAACTCAAGGGTCATCAACACTGCAACCGGTATTTACAA
CGAATGCTTTAAATGGGTTGCCCGGAGTTTCATTTGACGGAATTGATAAT
TACCTCACCTTGCCAACTTCTTCAGCATTAGGAATTCAAAACTCAGATTA
TGAGCTATTTATTGTAGCAAAACCGGCAAACTCGACAAATGTAGAATTTC
TGTTTGGTGGATCTGCTACATCAAATTATGAAGTACATATAAACGGGGGT
GCAAAATATGGTATTGAAGTCCCATCTGTTACTCCAACTGTTCAGGCATC
AGATGTATCAATTAGCGAAGAAATTGACAATTCTATGACGGTAGGGCTAA
CAACAGGAAATGGTTCAAACCGATTGATAGTAGCAAAAAAGGGATCTCCC
GTTGATTTTACTCCGGTTGACGGTTCTACTTATACTGCAAACAGTTCCTT
TGAATCGGGCACGGAGTTGGGGAGTGGAAATTATGTGATTTATAACGATA
GTGGAAACGAAGTCATACTTAGCAGTCTTCAGGAAAACCATCACTATTAC
TTCGCGGCTTTCGAATACTTTGGTTCTGAGGGTAGTGAAAAATACCTGAC
AACATCTCCGGGAACAGGAGATAGTTTTACCACCGGTTACGCCTTTGAGG
AAATCTCATCATTAGCCATGTGGTTACGAGCTGATGCGGGTATCGCAGAC
CCATCAAATGGGGCTTTGGTTTCTGCATGGGCAGACACTGCAGGTAGTGC
GGCAGAAGCAACTCAAGGGTCATCAACACTGCAACCGGTATTTACAACGA
ATGCTTTAAATGGGTTGCCCGGAGTTTCATTTGACGGAATTGATAATTAC
CTCACCTTGCCAACTTCTTCAGCATTAGGAATTCAAAACTCAGATTATGA
GCTATTTATTGTAGCAAAACCGGCAAACTCGACAAATGTAGAATTTCTGT
TTGGTGGATCTGCTACATCAAATTATGAAGTACATATAAACGGG
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