mRNA_M-pyrifera_M_contig82362.19263.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82362.19263.1
Unique NamemRNA_M-pyrifera_M_contig82362.19263.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A7V1GIH7_9BACT (Tetratricopeptide repeat protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V1GIH7_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 1.010e-18
Identity = 47/97 (48.45%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  337 LQATNNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYR 627
            L+A NN+AW++AT P E LRDG  A+ L+ + CEAT +  P +++T AAA AETG+F++A + A++AI+ AL      LA  IQ RL MY+  +PYR
Sbjct:  202 LEAINNLAWLLATVPQEDLRDGSEALRLAKRACEATGYNNPIFLNTLAAAYAETGRFEKAIQTAQEAIEKALLNGQKPLAEKIQKRLKMYQTHQPYR 298          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A7C5LNW1_9BACT (Tetratricopeptide repeat protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7C5LNW1_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.750e-16
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 1
Query:  349 NNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPY 624
            N +AWI+AT PD ALR+G  A+EL+S+LCE T ++ P  +D   A+ AETG+F  A + A +A++ AL+  D  L + IQ RL +Y  GKP+
Sbjct:  695 NALAWILATAPDPALRNGRQAIELASRLCELTRYQDPRALDVLGASYAETGRFTDAVQTATKAVEYALKRGDPNLVAGIQARLELYRQGKPF 786          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A2E7EQR6_9PLAN (Thioredoxin domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EQR6_9PLAN)

HSP 1 Score: 84.7 bits (208), Expect = 1.940e-15
Identity = 48/110 (43.64%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  307 QNLLAQRADLLQATNNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRDEV 636
            Q  L    + L A NN+AW+ AT PDE  R G  AVEL+ Q  E    + P ++DT AAA AETG F +A E AE A++ A  L  +  A+ IQ RL +Y +  PYR  +
Sbjct:  559 QKALEADPNWLSAANNLAWLWATHPDEQFRRGAQAVELAQQNLERLP-QRPDFLDTLAAAYAETGDFSQAIEFAESALERAKALGQVENAAQIQQRLELYRESHPYRQSL 667          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A3A0CQQ0_9BACT (Sulfatase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3A0CQQ0_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 5.250e-15
Identity = 42/95 (44.21%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  349 NNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRDE 633
            N++AW +AT PD+ LRDG  A+EL+ +     + + P ++DT AAALAETG FK+A ++A +A  +AL++    +A+ I GR+ +YE  KPYR++
Sbjct:  855 NDLAWRLATTPDDQLRDGKQALELAKRANGFAESDNPFFLDTLAAALAETGDFKQAADIARRAKALALDMKAEAVANEIAGRIELYEKQKPYREK 949          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A3B8ZIH2_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B8ZIH2_9PLAN)

HSP 1 Score: 82.8 bits (203), Expect = 8.700e-15
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  307 QNLLAQRADLLQATNNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRDE 633
            + LL    +  +  NN+AWI+AT P   LRD   AV +  +  + +    PS +DT AAA A +G+F+ A + A+QAID+ALEL D+ LAS+IQ R  +Y++ + Y D+
Sbjct:  506 RQLLEAEPENFKVANNLAWILATCPKADLRDPDQAVRIGQRANQQSGGRDPSILDTLAAAYASSGQFEIAVQTAQQAIDLALELQDLTLASSIQSRRQLYQEQRGYIDK 614          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: X0X3J9_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0X3J9_9ZZZZ)

HSP 1 Score: 77.8 bits (190), Expect = 1.030e-14
Identity = 40/96 (41.67%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  349 NNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRDEV 636
            NN+AW++AT P   +R+G  AV L+ + C+AT++E   ++DT AAA AETG+F+ A+ +A++AI+ A        A  ++  L MYE  +PYR+ V
Sbjct:   40 NNLAWLLATAPSPDIRNGSWAVLLAEKACKATEYENLRFLDTLAAAYAETGQFEEARRVAQEAIEKASIGKREPRAQELKRHLKMYEAHRPYREAV 135          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A518AIB4_9BACT (Tetratricopeptide repeat protein n=1 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AIB4_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.610e-14
Identity = 38/95 (40.00%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  349 NNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRDE 633
            NN+AW +AT P++++RDG  A+EL+++ CE T++++P  + T AAA AETG F+ AKE +++A+++    DD +LA  ++     Y+ G+P+R++
Sbjct:  498 NNLAWTLATSPNDSVRDGKRAIELATKACELTNYQLPHILSTLAAAYAETGDFEAAKEWSQKAVNIGDPDDDAQLAEELES----YKRGEPWRED 588          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A2V6HSE4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6HSE4_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 2.190e-14
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  343 ATNNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRDEVL 639
            A +N+AW++AT PDE+LRDG  AV+L+ Q    +   IP    T AAA AE+G+F  A + A+Q I++A    +  LA+ +QG + +Y++ +P RD  L
Sbjct:  250 AMSNLAWVLATSPDESLRDGAKAVQLAEQALHISGGRIPIIFRTLAAAYAESGRFSEAIQTAQQGIELADSQGNSGLATELQGNIALYQERRPLRDPSL 348          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A4P5YN88_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A4P5YN88_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 4.330e-14
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  349 NNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYR 627
            N +AW++AT PD A R+G  AV+L+ + CE T FE P  +D   AALAE G F  A+ +A++A+++A  L+  + +S    RL +Y   +PYR
Sbjct:  733 NALAWLLATHPDAAARNGAEAVKLARRACELTKFENPLLLDVLGAALAEAGDFAEAQAMAKRAVELAQRLNSPQASSEFSARLELYRQTRPYR 825          
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Match: A0A7V4P216_9BACT (Tetratricopeptide repeat protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V4P216_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 7.710e-14
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  331 DLLQATNNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYAAALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRD 630
            D ++    +AW++AT PD+A+RDG  AV L+ +  E T  + P  +D  AAALAETG F  A  LAEQ   +A    +  L +A++GRL  Y  G+P RD
Sbjct:  620 DSIELLTRLAWLLATHPDDAVRDGPEAVRLARRAVELTRGQAPMQLDALAAALAETGDFGEATRLAEQLTVLARRSGNPALIAAVEGRLREYRAGRPARD 719          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82362.19263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V1GIH7_9BACT1.010e-1848.45Tetratricopeptide repeat protein n=1 Tax=bacterium... [more]
A0A7C5LNW1_9BACT1.750e-1646.74Tetratricopeptide repeat protein n=1 Tax=Verrucomi... [more]
A0A2E7EQR6_9PLAN1.940e-1543.64Thioredoxin domain-containing protein n=1 Tax=Plan... [more]
A0A3A0CQQ0_9BACT5.250e-1544.21Sulfatase domain-containing protein n=1 Tax=Planct... [more]
A0A3B8ZIH2_9PLAN8.700e-1541.28Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
X0X3J9_9ZZZZ1.030e-1441.67Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A518AIB4_9BACT1.610e-1440.00Tetratricopeptide repeat protein n=1 Tax=Aeoliella... [more]
A0A2V6HSE4_9BACT2.190e-1441.41Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A4P5YN88_9BACT4.330e-1441.94Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A7V4P216_9BACT7.710e-1443.00Tetratricopeptide repeat protein n=1 Tax=Phycispha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82362contigM-pyrifera_M_contig82362:5..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.0
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog314230.DSM3645_13865
Preferred namecelD
KEGG koko:K02453,ko:K07280,ko:K20444,ko:K20543
KEGG TC1.B.55.3,3.A.15,4.D.1.3
KEGG Pathwayko03070,ko05111,map03070,map05111
KEGG ModuleM00331
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG0457 FOG TPR repeat
EggNOG OGs2IZWD@203682,COG0457@1,COG0457@2,COG3118@1,COG3118@2
COG Functional cat.KLT
CAZyGT2,GT4
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01005,ko02000,ko02044
Exons1
Model size645
Cds size615
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.6195672-CDS-M-pyrifera_M_contig82362:4..6191622816730.6195672-CDS-M-pyrifera_M_contig82362:4..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82362 5..619 -
1692278145.0080752-CDS-M-pyrifera_M_contig82362:4..6191692278145.0080752-CDS-M-pyrifera_M_contig82362:4..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82362 5..619 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.6332633-UTR-M-pyrifera_M_contig82362:619..6491622816730.6332633-UTR-M-pyrifera_M_contig82362:619..649Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82362 620..649 -
1692278145.0217009-UTR-M-pyrifera_M_contig82362:619..6491692278145.0217009-UTR-M-pyrifera_M_contig82362:619..649Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82362 620..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82362.19263.1prot_M-pyrifera_M_contig82362.19263.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82362 5..619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82362.19263.1

>prot_M-pyrifera_M_contig82362.19263.1 ID=prot_M-pyrifera_M_contig82362.19263.1|Name=mRNA_M-pyrifera_M_contig82362.19263.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
MMEQGKKEEAIAKLEESIALWPNNVQAHHTLAVLLIEQGETESAIEHLND
ALSIEPRFIPSLLSLATVLSQEDRWAESIDTFRRVIESEPQFQNLLAQRA
DLLQATNNVAWIMATQPDEALRDGFVAVELSSQLCEATDFEIPSYIDTYA
AALAETGKFKRAKELAEQAIDMALELDDIRLASAIQGRLNMYEDGKPYRD
EVLQ*
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mRNA from alignment at M-pyrifera_M_contig82362:5..649-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82362.19263.1 ID=mRNA_M-pyrifera_M_contig82362.19263.1|Name=mRNA_M-pyrifera_M_contig82362.19263.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=645bp|location=Sequence derived from alignment at M-pyrifera_M_contig82362:5..649- (Macrocystis pyrifera P11B4 male)
AGCACCGACACCTACAAACTCGCCGTGGGAATGATGGAACAAGGAAAAAA AGAAGAGGCCATCGCCAAATTGGAAGAGTCGATCGCGCTCTGGCCGAATA ACGTCCAGGCCCACCACACACTAGCCGTATTGCTTATCGAGCAAGGTGAA ACAGAATCTGCCATCGAGCACTTAAATGATGCCTTAAGTATCGAGCCTCG GTTTATCCCGTCGCTACTGTCCCTGGCAACGGTCTTATCCCAAGAGGACC GCTGGGCCGAGTCGATTGATACGTTCCGCCGCGTGATCGAGAGCGAACCT CAGTTCCAGAATTTGCTGGCACAGCGGGCCGACCTACTACAGGCCACCAA TAACGTAGCCTGGATTATGGCAACCCAACCGGACGAAGCTCTCCGAGACG GTTTTGTTGCGGTCGAACTTAGTTCACAGCTTTGCGAAGCAACCGACTTT GAAATCCCCAGTTATATTGACACCTACGCAGCAGCATTGGCCGAAACGGG CAAATTCAAACGGGCCAAAGAACTTGCGGAACAGGCAATAGACATGGCCC TGGAATTAGACGATATACGGCTGGCAAGCGCTATCCAAGGTCGACTGAAT ATGTACGAAGATGGAAAACCTTACCGCGACGAGGTACTGCAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82362:5..649-

>mRNA_M-pyrifera_M_contig82362.19263.1 ID=mRNA_M-pyrifera_M_contig82362.19263.1|Name=mRNA_M-pyrifera_M_contig82362.19263.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig82362:5..649- (Macrocystis pyrifera P11B4 male)
ATGATGGAACAAGGAAAAAAAGAAGAGGCCATCGCCAAATTGGAAGAGTC
GATCGCGCTCTGGCCGAATAACGTCCAGGCCCACCACACACTAGCCGTAT
TGCTTATCGAGCAAGGTGAAACAGAATCTGCCATCGAGCACTTAAATGAT
GCCTTAAGTATCGAGCCTCGGTTTATCCCGTCGCTACTGTCCCTGGCAAC
GGTCTTATCCCAAGAGGACCGCTGGGCCGAGTCGATTGATACGTTCCGCC
GCGTGATCGAGAGCGAACCTCAGTTCCAGAATTTGCTGGCACAGCGGGCC
GACCTACTACAGGCCACCAATAACGTAGCCTGGATTATGGCAACCCAACC
GGACGAAGCTCTCCGAGACGGTTTTGTTGCGGTCGAACTTAGTTCACAGC
TTTGCGAAGCAACCGACTTTGAAATCCCCAGTTATATTGACACCTACGCA
GCAGCATTGGCCGAAACGGGCAAATTCAAACGGGCCAAAGAACTTGCGGA
ACAGGCAATAGACATGGCCCTGGAATTAGACGATATACGGCTGGCAAGCG
CTATCCAAGGTCGACTGAATATGTACGAAGATGGAAAACCTTACCGCGAC
GAGGTACTGCAATAGATGATGGAACAAGGAAAAAAAGAAGAGGCCATCGC
CAAATTGGAAGAGTCGATCGCGCTCTGGCCGAATAACGTCCAGGCCCACC
ACACACTAGCCGTATTGCTTATCGAGCAAGGTGAAACAGAATCTGCCATC
GAGCACTTAAATGATGCCTTAAGTATCGAGCCTCGGTTTATCCCGTCGCT
ACTGTCCCTGGCAACGGTCTTATCCCAAGAGGACCGCTGGGCCGAGTCGA
TTGATACGTTCCGCCGCGTGATCGAGAGCGAACCTCAGTTCCAGAATTTG
CTGGCACAGCGGGCCGACCTACTACAGGCCACCAATAACGTAGCCTGGAT
TATGGCAACCCAACCGGACGAAGCTCTCCGAGACGGTTTTGTTGCGGTCG
AACTTAGTTCACAGCTTTGCGAAGCAACCGACTTTGAAATCCCCAGTTAT
ATTGACACCTACGCAGCAGCATTGGCCGAAACGGGCAAATTCAAACGGGC
CAAAGAACTTGCGGAACAGGCAATAGACATGGCCCTGGAATTAGACGATA
TACGGCTGGCAAGCGCTATCCAAGGTCGACTGAATATGTACGAAGATGGA
AAACCTTACCGCGACGAGGTACTGCAATAG
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