mRNA_M-pyrifera_M_contig82358.19260.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82358.19260.1
Unique NamemRNA_M-pyrifera_M_contig82358.19260.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: A0A813BW90_9DINO (Manf protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BW90_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 2.630e-21
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 CYYVSTVKRDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYRDDEL 276
            CYY++ +KR+ S  +  G   E+IC+KLKKK+ E+CELR+P +ID  +VD   +  KQLR +L ++    C GC+EK DFV+++E+  + EL
Sbjct:   74 CYYLTPIKREVSGPMKFGVPTEKICQKLKKKSPEICELRYPVKIDTSSVDLNTLSLKQLRQILADR-GVSCVGCLEKSDFVRKVEETNEQEL 164
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: A0A7M7K4R1_VARDE (Mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7K4R1_VARDE)

HSP 1 Score: 88.2 bits (217), Expect = 7.220e-20
Identity = 42/96 (43.75%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 CYYVSTVKR-------DFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYRD 267
            CYYV  ++        + S+ +  G  P +IC KL KK  ++C+LR+ + IDLKTVD KK++ + LR +L + F DPC GC+EK +FVK++E  RD
Sbjct:   86 CYYVGGLEESATKIVGELSKPMSWGMPPLKICEKLMKKDAQICDLRYEKTIDLKTVDIKKLKIRDLRKILSD-FDDPCDGCVEKSEFVKKVESIRD 180
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: UPI001F034282 (mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F034282)

HSP 1 Score: 87.0 bits (214), Expect = 1.410e-19
Identity = 38/99 (38.38%), Postives = 65/99 (65.66%), Query Frame = 1 
Query:    1 CYYV-------STVKRDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYRDDEL 276
            CYY+       +++  + ++ +     PE+IC KLK K  ++CEL++ ++ID++ VD KKMR KQLR +L + + + C GCIEK DF++R+E+ +D  +
Sbjct:   72 CYYIGGTDDAATSILNEITKPMSYHVPPEKICEKLKDKDAQICELQYEQKIDVRNVDLKKMRVKQLRKIL-QSWEEECNGCIEKSDFIQRIEELKDKHI 169
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: A0A5N5TL66_9CRUS (Mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5TL66_9CRUS)

HSP 1 Score: 85.1 bits (209), Expect = 1.880e-19
Identity = 39/95 (41.05%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:    1 CYYVSTVK-------RDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYR 264
            CYYV  ++        + S+ L  G   E++C KLKKK  ++C+LR+ +QIDLKTVD KK++ + L+ +L + + + C  CIEKGDF+K++E+ +
Sbjct:   13 CYYVGGLEDSATGILNEISKPLSWGMPSEKVCEKLKKKDSQICQLRYDKQIDLKTVDLKKLKVRDLKKILND-WDESCIDCIEKGDFIKKIEELK 106
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: UPI00106B5B8D (mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B5B8D)

HSP 1 Score: 86.7 bits (213), Expect = 1.940e-19
Identity = 40/96 (41.67%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:    1 CYYV-------STVKRDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYRD 267
            CYYV       +++  + ++ +     PE+IC KLK K  ++C+L++ ++ID++ VD KKMR KQLR +L + + + CTGCIEK DFV+R+E+ +D
Sbjct:   71 CYYVGGTEDAATSILNEVTKPMSYHVPPEKICEKLKTKDAQICDLQYEQKIDVRNVDLKKMRVKQLRKIL-QSWDEECTGCIEKTDFVQRIEELKD 165
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: A0A6S7G5R9_PARCT (Mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G5R9_PARCT)

HSP 1 Score: 84.0 bits (206), Expect = 2.180e-18
Identity = 39/96 (40.62%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 CYYV-------STVKRDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYRD 267
            CYYV       +++  + ++ +      E+IC KLK K  ++CEL++ ++ID++ VD KKMR KQLR +L + + + C GCIEK DFV+R+E+ +D
Sbjct:   71 CYYVGGTEDAATSILNEITKPISYHVPAEKICEKLKDKDAQICELQYEQKIDVRNVDLKKMRVKQLRKIL-QSWDEECNGCIEKSDFVQRIEELKD 165
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: A0A4Y2A230_ARAVE (Mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2A230_ARAVE)

HSP 1 Score: 84.0 bits (206), Expect = 2.340e-18
Identity = 42/103 (40.78%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 CYYVSTVKR-------DFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLE----KYRDDEL 276
            CYY+  ++        + S+ L  G   ++IC KLKKK  ++C+LR+ + IDLKTVD KK++ + L+ +L + + + C GCIEK DF+KR+E    KY  +EL
Sbjct:   72 CYYIGGLEESATKIVAEMSRPLSYGLPIDKICEKLKKKDQQICDLRYEKTIDLKTVDLKKLKVRDLKKILSD-WDERCEGCIEKADFIKRIEELKPKYSREEL 173
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BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: F2UF83_SALR5 (ARMET-like protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF83_SALR5)

HSP 1 Score: 84.0 bits (206), Expect = 2.990e-18
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 CYYV-------STVKRDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYR 264
            CYY+       + + R+ +  +     P  +C +LKKK  ++C+L++ E+IDL  +D KK R K L+ +L EQF D C GC+EK D++KR+E+ +
Sbjct:   84 CYYIGGSEDAATGLLREVTGPISRYMPPAAVCSRLKKKDQQICDLQYDEEIDLSKIDLKKQRVKVLKKILNEQFGDSCKGCLEKTDYIKRIEELK 178
[Close]
BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: A0A6P4GT55_DROTK (Mesencephalic astrocyte-derived neurotrophic factor homolog n=3 Tax=melanogaster group TaxID=32346 RepID=A0A6P4GT55_DROTK)

HSP 1 Score: 83.6 bits (205), Expect = 3.300e-18
Identity = 41/103 (39.81%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 CYYVSTVKR-------DFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLE----KYRDDEL 276
            CYY+  ++        + S+ L      E++C KLKKK  ++C+LR+ +QIDLK+VD KK++ + L+ +L + + + C GC+EKGDF+KR+E    KY   EL
Sbjct:   72 CYYLGGLEESATGILNELSKPLSWSMPAEKVCEKLKKKDAQICDLRYEKQIDLKSVDLKKLKVRDLKKILND-WDESCDGCLEKGDFIKRIEELKPKYSHGEL 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Match: UPI0018856586 (mesencephalic astrocyte-derived neurotrophic factor homolog n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI0018856586)

HSP 1 Score: 83.2 bits (204), Expect = 4.560e-18
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 CYYVSTVK-------RDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVDFKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYR 264
            CYY+  V+       +D +Q +      E+IC +LKKK  ++CELR+ +QIDLK VD KK++ + L+ +L + + + C GC+EK DF+KR+E+ +
Sbjct:   71 CYYIGGVEDSATRTLKDITQPMSYSMPAEKICERLKKKDPQICELRYDKQIDLKNVDLKKLKVRDLKKILSD-WDEICDGCLEKTDFIKRIEELK 164
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82358.19260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BW90_9DINO2.630e-2144.57Manf protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7M7K4R1_VARDE7.220e-2043.75Mesencephalic astrocyte-derived neurotrophic facto... [more]
UPI001F0342821.410e-1938.38mesencephalic astrocyte-derived neurotrophic facto... [more]
A0A5N5TL66_9CRUS1.880e-1941.05Mesencephalic astrocyte-derived neurotrophic facto... [more]
UPI00106B5B8D1.940e-1941.67mesencephalic astrocyte-derived neurotrophic facto... [more]
A0A6S7G5R9_PARCT2.180e-1840.63Mesencephalic astrocyte-derived neurotrophic facto... [more]
A0A4Y2A230_ARAVE2.340e-1840.78Mesencephalic astrocyte-derived neurotrophic facto... [more]
F2UF83_SALR52.990e-1837.89ARMET-like protein n=1 Tax=Salpingoeca rosetta (st... [more]
A0A6P4GT55_DROTK3.300e-1839.81Mesencephalic astrocyte-derived neurotrophic facto... [more]
UPI00188565864.560e-1840.00mesencephalic astrocyte-derived neurotrophic facto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82358contigM-pyrifera_M_contig82358:479..757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score85.5
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog946362.XP_004992336.1
Preferred nameMANF
KEGG koko:K13190
Hectar predicted targeting categoryother localisation
GOsGO:0001963,GO:0001976,GO:0001980,GO:0002014,GO:0002576,GO:0003008,GO:0003013,GO:0003018,GO:0003073,GO:0003084,GO:0003674,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005829,GO:0006584,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0008289,GO:0009712,GO:0009987,GO:0012505,GO:0016043,GO:0016192,GO:0017144,GO:0018958,GO:0019725,GO:0022008,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031974,GO:0032501,GO:0032502,GO:0032940,GO:0035150,GO:0035296,GO:0042310,GO:0042417,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045777,GO:0046903,GO:0048468,GO:0048471,GO:0048583,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050880,GO:0051179,GO:0051234,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0071542,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090066,GO:0097164,GO:0097746,GO:0097756,GO:0098916,GO:0099536,GO:0099537,GO:0120036,GO:1901360,GO:1901564,GO:1901615,GO:1905897
EggNOG free text desc.Mesencephalic astrocyte-derived neurotrophic factor
EggNOG OGs38DMX@33154,KOG4154@1,KOG4154@2759
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.5147598-CDS-M-pyrifera_M_contig82358:478..7571622816730.5147598-CDS-M-pyrifera_M_contig82358:478..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82358 479..757 -
1692278144.972646-CDS-M-pyrifera_M_contig82358:478..7571692278144.972646-CDS-M-pyrifera_M_contig82358:478..757Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82358 479..757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82358.19260.1prot_M-pyrifera_M_contig82358.19260.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82358 479..757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82358.19260.1

>prot_M-pyrifera_M_contig82358.19260.1 ID=prot_M-pyrifera_M_contig82358.19260.1|Name=mRNA_M-pyrifera_M_contig82358.19260.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
CYYVSTVKRDFSQQLMNGASPERICRKLKKKAMEVCELRFPEQIDLKTVD
FKKMRTKQLRALLREQFSDPCTGCIEKGDFVKRLEKYRDDEL*
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mRNA from alignment at M-pyrifera_M_contig82358:479..757-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82358.19260.1 ID=mRNA_M-pyrifera_M_contig82358.19260.1|Name=mRNA_M-pyrifera_M_contig82358.19260.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig82358:479..757- (Macrocystis pyrifera P11B4 male)
TGCTACTACGTTTCCACGGTGAAGCGTGACTTTTCGCAGCAGCTGATGAA
CGGCGCTTCTCCCGAGCGCATCTGCCGCAAGCTCAAGAAGAAGGCGATGG
AGGTGTGCGAGCTGCGCTTTCCCGAGCAGATCGACCTCAAGACGGTCGAC
TTCAAGAAGATGCGCACCAAACAGCTGCGCGCCCTCCTGCGCGAACAGTT
CAGCGACCCCTGCACCGGGTGCATCGAAAAAGGGGACTTCGTCAAGAGAC
TCGAAAAATACAGGGACGATGAGTTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82358:479..757-

>mRNA_M-pyrifera_M_contig82358.19260.1 ID=mRNA_M-pyrifera_M_contig82358.19260.1|Name=mRNA_M-pyrifera_M_contig82358.19260.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig82358:479..757- (Macrocystis pyrifera P11B4 male)
TGCTACTACGTTTCCACGGTGAAGCGTGACTTTTCGCAGCAGCTGATGAA
CGGCGCTTCTCCCGAGCGCATCTGCCGCAAGCTCAAGAAGAAGGCGATGG
AGGTGTGCGAGCTGCGCTTTCCCGAGCAGATCGACCTCAAGACGGTCGAC
TTCAAGAAGATGCGCACCAAACAGCTGCGCGCCCTCCTGCGCGAACAGTT
CAGCGACCCCTGCACCGGGTGCATCGAAAAAGGGGACTTCGTCAAGAGAC
TCGAAAAATACAGGGACGATGAGTTGTGATGCTACTACGTTTCCACGGTG
AAGCGTGACTTTTCGCAGCAGCTGATGAACGGCGCTTCTCCCGAGCGCAT
CTGCCGCAAGCTCAAGAAGAAGGCGATGGAGGTGTGCGAGCTGCGCTTTC
CCGAGCAGATCGACCTCAAGACGGTCGACTTCAAGAAGATGCGCACCAAA
CAGCTGCGCGCCCTCCTGCGCGAACAGTTCAGCGACCCCTGCACCGGGTG
CATCGAAAAAGGGGACTTCGTCAAGAGACTCGAAAAATACAGGGACGATG
AGTTGTGA
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