mRNA_M-pyrifera_M_contig82355.19259.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82355.19259.1
Unique NamemRNA_M-pyrifera_M_contig82355.19259.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: A0A5A8ECB8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECB8_CAFRO)

HSP 1 Score: 95.1 bits (235), Expect = 1.040e-20
Identity = 45/98 (45.92%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAIVAPNGFG--GAWSGSTSINEDGDPVILYTCI 288
            P +H RPP  W+NDPNGP YDP + TYHLF Q+NP G+S+    ++SW+H+ S  L +W W   +A+     +   G +SGS SI  DG P++ YTC+
Sbjct:   25 PQFHVRPPTNWINDPNGPMYDPASKTYHLFTQYNPFGSSW---GHMSWSHSASLDLVRW-WHLPVALWPNQTYDQDGVFSGSVSI-VDGAPLLSYTCV 117          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: A0A812NRC5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812NRC5_9DINO)

HSP 1 Score: 92.8 bits (229), Expect = 6.840e-20
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1
Query:    7 YHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAIVAPNGFG--GAWSGSTSINEDGDPVILYTCI 288
            +H RPP  W+NDPNGP YDP + TYHLF Q+NP G+S+    ++SW+H+ S  L +W W   +A+     +   G +SGS SI  DG P++ YTC+
Sbjct:   80 FHVRPPTNWINDPNGPMYDPASKTYHLFTQYNPFGSSW---GHMSWSHSASLDLVRW-WHLPVALWPNQTYDQDGVFSGSVSI-VDGAPLLSYTCV 170          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: E1ZI55_CHLVA (Glyco_hydro_32N domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZI55_CHLVA)

HSP 1 Score: 85.9 bits (211), Expect = 2.270e-19
Identity = 42/100 (42.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:    1 PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAI--VAPNGFGGAWSGSTSINEDGDPVILYTCIQK 294
            P +H  PPQGWMNDPNGP   P    YHLF Q+NPS   + A    SW H  S  L  W  L  +A+   A     G +SGS ++  +G P I+YT + +
Sbjct:    2 PGFHVAPPQGWMNDPNGPLEFPAGQLYHLFYQYNPSSPKWAAP---SWGHVASADLVHWMQLPSVALQPAAYYDSDGVFSGSATLLTNGTPAIMYTGVSR 98          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: A0A251SSV5_HELAN (Putative beta-fructofuranosidase, insoluble isoenzyme CWINV5 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SSV5_HELAN)

HSP 1 Score: 87.4 bits (215), Expect = 5.200e-18
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    7 YHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAIVA--PNGFGGAWSGSTSINEDGDPVILYT 282
            YH +P + WMNDPNGP Y      YHLF Q+NP G   P   N+SW HA+S  L  W  L D+A++   P    G +SGST+I ++G+PVI+YT
Sbjct:   43 YHFQPSKNWMNDPNGPVY--YKGVYHLFYQYNPYG---PLWGNMSWGHAISYDLVNWVHL-DIALLENEPYDINGCFSGSTTILQNGEPVIMYT 130          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: UPI001CB9769C (beta-fructofuranosidase, insoluble isoenzyme CWINV3 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9769C)

HSP 1 Score: 85.5 bits (210), Expect = 2.470e-17
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    1 PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAIVA-PNGFGGAWSGSTSINEDGDPVILYT 282
            P +H RPPQ W+NDPNGP Y      YHLF Q+NP G+ F  +  I WAH+ S  L  W  LK   + + P      WSGS +I     PVILYT
Sbjct:   39 PQFHLRPPQNWINDPNGPLY--YKGVYHLFYQYNPYGSLF--NQTIVWAHSASYDLVNWIHLKHALVPSKPFDMKSCWSGSATILPGNYPVILYT 129          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: A0A6I9TK10_SESIN (Beta-fructofuranosidase n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TK10_SESIN)

HSP 1 Score: 85.5 bits (210), Expect = 2.520e-17
Identity = 45/94 (47.87%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    7 YHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAIVAPNGF--GGAWSGSTSINEDGDPVILYT 282
            YH +P + WMNDPNGP +      YH F Q+NPSGA +    NISW HAVS  L  W  L  LA+V    +   G W+GS +I +DG  V+LYT
Sbjct:  133 YHFQPQKNWMNDPNGPLF--YKGWYHFFYQYNPSGAVW---GNISWGHAVSKDLINWRHLP-LAMVPDQWYDINGVWTGSATILQDGQLVMLYT 220          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: A0A6L2KC80_TANCI (Beta-fructofuranosidase, insoluble isoenzyme CWINV1-like isoform X1 n=2 Tax=Anthemideae TaxID=102810 RepID=A0A6L2KC80_TANCI)

HSP 1 Score: 85.1 bits (209), Expect = 3.350e-17
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    1 PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAIVA-PNGFGGAWSGSTSINEDGDPVILYT 282
            P++H RPPQ W+NDPNGP Y      YHLF Q+NP G+ F  +  I W H+VS  +  W  L++  I + P      +SGST+I     PV+LYT
Sbjct:   25 PSFHLRPPQNWLNDPNGPMY--YKGVYHLFYQYNPYGSIF--NKTIVWGHSVSHDMVNWIHLQNALIPSSPFDLNSCYSGSTTILPGNKPVVLYT 115          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: A0A812TE68_9DINO (CWINV2 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TE68_9DINO)

HSP 1 Score: 83.6 bits (205), Expect = 1.190e-16
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 1
Query:    1 PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAIVA------PNGFGGAWSGSTSINEDGDPVILYTC 285
            P +H RPP+ W+NDPNGPF DP+T   HL+ Q+NP GA++    N+SW H VS     W  +     +       P    G +SGS ++     P+I YTC
Sbjct:   34 PVFHVRPPENWINDPNGPFRDPRTGLIHLWMQYNPGGANW---GNMSWYHVVSWDGVTWEHVGVTEALRFNPSKYPYADAGFYSGSVTLVNGSHPIIAYTC 131          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: A0A4Y7X1B5_ALKHA (Glycoside hydrolase n=1 Tax=Alkalihalobacillus halodurans TaxID=86665 RepID=A0A4Y7X1B5_ALKHA)

HSP 1 Score: 83.6 bits (205), Expect = 1.210e-16
Identity = 46/99 (46.46%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWNWLKDLAI-VAPNGF----GGAWSGSTSINEDGDPVILYT 282
            P YH   P+ WMN+P+ P Y      YHLF QFNP+G   P   NI W HAVS  L  W   +DL I +AP        G+WSG + I+EDG+PV+L+T
Sbjct:  301 PQYHFTAPEHWMNEPHAPLYF--NGQYHLFYQFNPAG---PYWGNIHWGHAVSDDLIHW---QDLPIALAPEADQVDPDGSWSGDSVIDEDGNPVLLFT 391          
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Match: M2NMA4_BAUPA (Glycoside hydrolase family 32 protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2NMA4_BAUPA)

HSP 1 Score: 83.2 bits (204), Expect = 1.640e-16
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAHAVSPTLSQWN----WLKDLAI-VAPNGFG-----GAWSGST-SIN----EDGDPVILYTCI 288
            P+YH   P GWMNDPNGP YDPKT TYH+F Q++P   ++    NISW HA S     W     W    A+ + P G+G     G +SG+  ++N     DG  +I YT +
Sbjct:  111 PHYHFLAPAGWMNDPNGPVYDPKTDTYHMFYQWHPEHINW---GNISWGHATSKDQITWTDFNGWQDSQALALGPTGYGNYNGLGIFSGTAQAVNLHGQADGTLLIFYTSV 218          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82355.19259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ECB8_CAFRO1.040e-2045.92Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A812NRC5_9DINO6.840e-2045.83Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
E1ZI55_CHLVA2.270e-1942.00Glyco_hydro_32N domain-containing protein (Fragmen... [more]
A0A251SSV5_HELAN5.200e-1847.87Putative beta-fructofuranosidase, insoluble isoenz... [more]
UPI001CB9769C2.470e-1746.32beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]
A0A6I9TK10_SESIN2.520e-1747.87Beta-fructofuranosidase n=1 Tax=Sesamum indicum Ta... [more]
A0A6L2KC80_TANCI3.350e-1744.21Beta-fructofuranosidase, insoluble isoenzyme CWINV... [more]
A0A812TE68_9DINO1.190e-1639.60CWINV2 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A4Y7X1B5_ALKHA1.210e-1646.46Glycoside hydrolase n=1 Tax=Alkalihalobacillus hal... [more]
M2NMA4_BAUPA1.640e-1641.44Glycoside hydrolase family 32 protein n=1 Tax=Baud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82355contigM-pyrifera_M_contig82355:608..904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog4558.Sb01g008910.1
KEGG rclassRC00028,RC00077
KEGG koko:K01193
KEGG ReactionR00801,R00802,R02410,R03635,R03921,R06088
KEGG Pathwayko00052,ko00500,ko01100,map00052,map00500,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004564,GO:0004575,GO:0005575,GO:0005618,GO:0005623,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005985,GO:0005987,GO:0006073,GO:0006810,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009987,GO:0015926,GO:0016052,GO:0016787,GO:0016798,GO:0030312,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044464,GO:0046352,GO:0046903,GO:0051179,GO:0051234,GO:0071704,GO:0071836,GO:0071944,GO:0090599,GO:1901575
EggNOG free text desc.Belongs to the glycosyl hydrolase 32 family
EggNOG OGs37QPW@33090,3GG4R@35493,3IFBN@38820,3KNZ8@4447,COG1621@1,KOG0228@2759
EC3.2.1.26
COG Functional cat.G
CAZyGH32
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.4832532-CDS-M-pyrifera_M_contig82355:607..9041622816730.4832532-CDS-M-pyrifera_M_contig82355:607..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82355 608..904 +
1692278144.9584343-CDS-M-pyrifera_M_contig82355:607..9041692278144.9584343-CDS-M-pyrifera_M_contig82355:607..904Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82355 608..904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82355.19259.1prot_M-pyrifera_M_contig82355.19259.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82355 608..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82355.19259.1

>prot_M-pyrifera_M_contig82355.19259.1 ID=prot_M-pyrifera_M_contig82355.19259.1|Name=mRNA_M-pyrifera_M_contig82355.19259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
PNYHTRPPQGWMNDPNGPFYDPKTSTYHLFAQFNPSGASFPADANISWAH
AVSPTLSQWNWLKDLAIVAPNGFGGAWSGSTSINEDGDPVILYTCIQKE
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mRNA from alignment at M-pyrifera_M_contig82355:608..904+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82355.19259.1 ID=mRNA_M-pyrifera_M_contig82355.19259.1|Name=mRNA_M-pyrifera_M_contig82355.19259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig82355:608..904+ (Macrocystis pyrifera P11B4 male)
CCCAATTACCATACAAGACCACCACAAGGGTGGATGAATGATCCGAATGG CCCCTTTTACGACCCCAAAACATCAACTTATCACCTTTTTGCCCAATTCA ACCCTTCTGGTGCGTCCTTCCCTGCGGATGCCAACATTTCTTGGGCACAC GCTGTATCACCTACATTGTCGCAGTGGAATTGGCTGAAAGATTTGGCCAT TGTAGCTCCAAATGGGTTTGGAGGCGCGTGGAGTGGTTCAACTTCCATCA ATGAGGATGGAGACCCTGTGATCTTATATACATGCATTCAGAAAGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82355:608..904+

>mRNA_M-pyrifera_M_contig82355.19259.1 ID=mRNA_M-pyrifera_M_contig82355.19259.1|Name=mRNA_M-pyrifera_M_contig82355.19259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig82355:608..904+ (Macrocystis pyrifera P11B4 male)
CCCAATTACCATACAAGACCACCACAAGGGTGGATGAATGATCCGAATGG
CCCCTTTTACGACCCCAAAACATCAACTTATCACCTTTTTGCCCAATTCA
ACCCTTCTGGTGCGTCCTTCCCTGCGGATGCCAACATTTCTTGGGCACAC
GCTGTATCACCTACATTGTCGCAGTGGAATTGGCTGAAAGATTTGGCCAT
TGTAGCTCCAAATGGGTTTGGAGGCGCGTGGAGTGGTTCAACTTCCATCA
ATGAGGATGGAGACCCTGTGATCTTATATACATGCATTCAGAAAGAACCC
AATTACCATACAAGACCACCACAAGGGTGGATGAATGATCCGAATGGCCC
CTTTTACGACCCCAAAACATCAACTTATCACCTTTTTGCCCAATTCAACC
CTTCTGGTGCGTCCTTCCCTGCGGATGCCAACATTTCTTGGGCACACGCT
GTATCACCTACATTGTCGCAGTGGAATTGGCTGAAAGATTTGGCCATTGT
AGCTCCAAATGGGTTTGGAGGCGCGTGGAGTGGTTCAACTTCCATCAATG
AGGATGGAGACCCTGTGATCTTATATACATGCATTCAGAAAGAA
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