mRNA_M-pyrifera_M_contig8227.19243.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8227.19243.1
Unique NamemRNA_M-pyrifera_M_contig8227.19243.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8227.19243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8227contigM-pyrifera_M_contig8227:6664..7295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size632
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8227.19243.1prot_M-pyrifera_M_contig8227.19243.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8227 6966..7283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.7403538-UTR-M-pyrifera_M_contig8227:6663..69651622816729.7403538-UTR-M-pyrifera_M_contig8227:6663..6965Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8227 6664..6965 +
1692278144.5812285-UTR-M-pyrifera_M_contig8227:6663..69651692278144.5812285-UTR-M-pyrifera_M_contig8227:6663..6965Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8227 6664..6965 +
1622816729.7630303-UTR-M-pyrifera_M_contig8227:7283..72951622816729.7630303-UTR-M-pyrifera_M_contig8227:7283..7295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8227 7284..7295 +
1692278144.608142-UTR-M-pyrifera_M_contig8227:7283..72951692278144.608142-UTR-M-pyrifera_M_contig8227:7283..7295Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8227 7284..7295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.7515833-CDS-M-pyrifera_M_contig8227:6965..72831622816729.7515833-CDS-M-pyrifera_M_contig8227:6965..7283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8227 6966..7283 +
1692278144.5991104-CDS-M-pyrifera_M_contig8227:6965..72831692278144.5991104-CDS-M-pyrifera_M_contig8227:6965..7283Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8227 6966..7283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8227.19243.1

>prot_M-pyrifera_M_contig8227.19243.1 ID=prot_M-pyrifera_M_contig8227.19243.1|Name=mRNA_M-pyrifera_M_contig8227.19243.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MWGNSTGLLNNSVPTRALRKITGRHERRGYKSSSPGGETTNRRVLHACNR
RYLYIGGRSTGLLNGAATRALRKTIGDVPDGIEGIPTSQRQKHMPQALRV
YGPTR*
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mRNA from alignment at M-pyrifera_M_contig8227:6664..7295+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8227.19243.1 ID=mRNA_M-pyrifera_M_contig8227.19243.1|Name=mRNA_M-pyrifera_M_contig8227.19243.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=632bp|location=Sequence derived from alignment at M-pyrifera_M_contig8227:6664..7295+ (Macrocystis pyrifera P11B4 male)
GCCATTACGAGAATACTCCCCGTGTTCTACCATACATACGCCTTGCGGAA
AGCAACCGGAGGCGTGACACAAAGCAAGCCGCATCGGGGGCGGGGGGGCT
AACCACTTTGCGCATTCTACGCGTGCACCAGGCGTTACAGGTATATCGGT
CGACTCGGCAGGGTTCCTATGCTGCCCCGTGTTGCACCATACGCCTTGCG
GAACATAACCGCAGGCGTGACCAATGAGCAAATGAATCAAGCAGCACGAG
GAATACCAGCCAATCAGCGAGTTAATCGCAAGCAAGCATAGGCCTTGCGG
GTATGTGGGGCAACTCAACAGGGTTGCTGAACAACAGTGTTCCAACACGC
GCATTGCGGAAAATAACCGGGAGGCATGAACGACGGGGATACAAATCGAG
CAGCCCCGGGGGGGAAACAACCAATCGGCGCGTTTTGCATGCATGCAACA
GGCGTTACCTGTATATAGGGGGCAGATCAACAGGGCTACTGAACGGTGCT
GCAACACGCGCTTTGAGGAAAACAATCGGAGACGTACCCGATGGCATCGA
GGGAATACCAACCAGTCAACGCCAGAAACACATGCCACAGGCGCTACGAG
TATATGGGCCAACTCGATAAGGTCACTGCCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8227:6664..7295+

>mRNA_M-pyrifera_M_contig8227.19243.1 ID=mRNA_M-pyrifera_M_contig8227.19243.1|Name=mRNA_M-pyrifera_M_contig8227.19243.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig8227:6664..7295+ (Macrocystis pyrifera P11B4 male)
ATGTGGGGCAACTCAACAGGGTTGCTGAACAACAGTGTTCCAACACGCGC
ATTGCGGAAAATAACCGGGAGGCATGAACGACGGGGATACAAATCGAGCA
GCCCCGGGGGGGAAACAACCAATCGGCGCGTTTTGCATGCATGCAACAGG
CGTTACCTGTATATAGGGGGCAGATCAACAGGGCTACTGAACGGTGCTGC
AACACGCGCTTTGAGGAAAACAATCGGAGACGTACCCGATGGCATCGAGG
GAATACCAACCAGTCAACGCCAGAAACACATGCCACAGGCGCTACGAGTA
TATGGGCCAACTCGATAAATGTGGGGCAACTCAACAGGGTTGCTGAACAA
CAGTGTTCCAACACGCGCATTGCGGAAAATAACCGGGAGGCATGAACGAC
GGGGATACAAATCGAGCAGCCCCGGGGGGGAAACAACCAATCGGCGCGTT
TTGCATGCATGCAACAGGCGTTACCTGTATATAGGGGGCAGATCAACAGG
GCTACTGAACGGTGCTGCAACACGCGCTTTGAGGAAAACAATCGGAGACG
TACCCGATGGCATCGAGGGAATACCAACCAGTCAACGCCAGAAACACATG
CCACAGGCGCTACGAGTATATGGGCCAACTCGATAA
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