mRNA_M-pyrifera_M_contig82258.19239.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82258.19239.1
Unique NamemRNA_M-pyrifera_M_contig82258.19239.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A6I9RTX1_ELAGV (replication factor C subunit 3 n=4 Tax=commelinids TaxID=4734 RepID=A0A6I9RTX1_ELAGV)

HSP 1 Score: 191 bits (485), Expect = 1.360e-57
Identity = 91/170 (53.53%), Postives = 123/170 (72.35%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510
            +RSRCL +RV APT+++I+ VL+ +GK E +++PPG AARIA  S R+LRRA+L LE C+V + P  A+Q V  MDWE+Y+  +A+DI+ +QSP  L   R K+YELLVNCIPP+++  KL+ EL K      KHE+  WAA+YEH+ R+GQK  FHIEAF+AK M   K
Sbjct:  125 VRSRCLNIRVNAPTEEQIIKVLEFIGKKENLQLPPGFAARIAAQSNRSLRRAILSLETCRVQQYPFTANQAVLPMDWEQYVSEIASDIIMEQSPKRLFLVRGKIYELLVNCIPPEIILKKLLSELLKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK 294          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A6P5FSY3_ANACO (replication factor C subunit 5 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5FSY3_ANACO)

HSP 1 Score: 192 bits (489), Expect = 1.410e-57
Identity = 92/171 (53.80%), Postives = 120/171 (70.18%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513
            +RSRCL VRV APT++EI+ VL+ +GK E + +P G AARIA  S RNLRRAVL  E C+V + P  A+Q V  +DWE+Y+  +A DI+ +QSP  L   R K+YELLVNCIPP+++  KL+ EL +      KHE+  WAAHYEHK R+G KP FH+EAF+AK M   K+
Sbjct:  177 VRSRCLNVRVNAPTEEEIVKVLEFIGKKENLTLPAGFAARIAAQSNRNLRRAVLFFETCRVQQYPFAANQAVPPLDWEQYVSEIAGDIMKEQSPKRLFSVRGKLYELLVNCIPPEIILKKLLSELLRKLDSELKHEVCHWAAHYEHKMRLGSKPIFHLEAFVAKFMSIYKE 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A024TKG1_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TKG1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.660e-57
Identity = 97/171 (56.73%), Postives = 120/171 (70.18%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513
            LRSRCLG+R+GAPT  +I  VL  V + E +   P LA  IA+ SERNLRRA+LMLE C+V + P   +QP+Q  +WE YI G+A D+L +QSP SLLRARDK YELL NCIPPDV+   L  ELT    +  KH++A +AA YEH+ + GQKP FH+EAFLAK M   KK
Sbjct:  175 LRSRCLGIRIGAPTHDDITRVLQKVCEKESLTFCPPLAVEIAKKSERNLRRALLMLETCRVQQYPFSPTQPIQLPEWEEYICGLAKDVLQEQSPGSLLRARDKFYELLSNCIPPDVILKVLCRELTARLDDDLKHDLAHYAAFYEHRMQCGQKPIFHLEAFLAKFMTIYKK 345          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: B9SI66_RICCO (Replication factor C / DNA polymerase III gamma-tau subunit, putative n=2 Tax=Ricinus communis TaxID=3988 RepID=B9SI66_RICCO)

HSP 1 Score: 191 bits (485), Expect = 4.080e-57
Identity = 85/163 (52.15%), Postives = 123/163 (75.46%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLA 489
            +RSRCL VR+ AP++++I+ VL+ +GK EG+++P G AAR+A  S R+LRRAVL  E C+V + P  ++QP+  MDWE Y+  +A+DI+ +QSP  L + R K+YELL+NCIPPD++  +LV+EL K   E  KHE++ WAA+YEH+ R+GQK  FH+EAF+A
Sbjct:  178 IRSRCLNVRISAPSEEQIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQYPFTSNQPIPPMDWEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIILKRLVNELLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVA 340          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: D5ADN5_PICSI (AAA domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5ADN5_PICSI)

HSP 1 Score: 190 bits (483), Expect = 1.120e-56
Identity = 90/171 (52.63%), Postives = 124/171 (72.51%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513
            +RSRCL +R+ +P++++I+DVL+ + K EG+++P G   RIA+ S RNLRRA+L  EACKV + P   +QP QT+DWE+YI  +A+DI+ +QSP  L   R K+YELLVNCIPP+VV  +L+ EL K      KHE+  WAA+YEH+ R+GQK  FH+EAF+AK M   KK
Sbjct:  177 VRSRCLNIRINSPSKEQIVDVLEYIAKKEGLQLPMGFTGRIAQQSNRNLRRAILCFEACKVQQYPFTDNQPAQTLDWEQYISEIASDIVNEQSPKRLYMVRGKIYELLVNCIPPEVVLKRLLFELMKKLDSELKHEVCHWAAYYEHRMRLGQKAIFHLEAFIAKFMSIYKK 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: D8SN98_SELML (AAA domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SN98_SELML)

HSP 1 Score: 190 bits (482), Expect = 1.580e-56
Identity = 94/171 (54.97%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513
            +RSRCL VR+ AP++ EI  VL  V K E +R+PP  A RIA  S RNLRRA+L LEACKV + P   +QPVQT DWE+YIV +A+DI+ +QSP  L   R K+YELLVNCIPP++V  +L+ EL K      KHE+  WAA++EH+ ++GQK  FH+EAF+AK M   KK
Sbjct:  177 VRSRCLNVRINAPSEDEITKVLQFVAKKEEIRLPPAFAGRIALHSNRNLRRAILSLEACKVQQYPFTENQPVQTTDWEQYIVEIASDIVNEQSPKRLFIVRGKLYELLVNCIPPEIVLKRLLVELMKKLDSELKHEVCHWAAYHEHRMQLGQKAIFHLEAFVAKFMSVYKK 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A2C9VHU3_MANES (AAA domain-containing protein n=37 Tax=Pentapetalae TaxID=1437201 RepID=A0A2C9VHU3_MANES)

HSP 1 Score: 189 bits (479), Expect = 4.460e-56
Identity = 85/170 (50.00%), Postives = 125/170 (73.53%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510
            +RSRCL VR+ +P++++I+ VL+ +GK EG+++PPG AARIA  S R+LRRA+L  E C+V + P  ++Q +  MDWE Y+  +A+DI+ +QSP  L + R K+YELL+NCIPP+++  +L+ EL K   E  KHE++ WAA+YEH+ R+GQK  FH+EAF+AK M   K
Sbjct:  177 IRSRCLNVRINSPSEEQIVKVLEFIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMDWEEYVSEIASDIMREQSPKKLFQIRGKLYELLINCIPPEIILKRLLYELLKKLDEELKHEVSHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYK 346          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A9SKH1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SKH1_PHYPA)

HSP 1 Score: 189 bits (479), Expect = 4.460e-56
Identity = 91/171 (53.22%), Postives = 122/171 (71.35%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIKK 513
            +RSRC+ +R+ +P++ +I+DVL  V K E + +PP LA RIA  S RNLRR++L LEACK  + P  A Q VQT DWE++IVG+A DI+ +QSP  L + R+K+YELLVNCIPP+V+  +L+DEL K      KHE+  WAA YEH+ + GQK  FH+EAF+AK M   KK
Sbjct:  177 VRSRCVNIRINSPSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYPFTADQEVQTTDWEQFIVGLANDIVTEQSPKKLFQVREKLYELLVNCIPPEVILKRLLDELMKKLDSELKHEVCHWAAFYEHRMQQGQKAIFHLEAFVAKFMSIYKK 347          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: A0A5J5TSY0_GOSBA (Uncharacterized protein n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A5J5TSY0_GOSBA)

HSP 1 Score: 186 bits (473), Expect = 6.060e-56
Identity = 88/170 (51.76%), Postives = 120/170 (70.59%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510
            +RSRCL +R+ AP+ ++I+ VL+ +GK EG+++P G AARIA  S RNLRRA+L  E C+V + P  ++Q +  MDWE YI  +A DI+ +QSP  L + R K+YELL+NCIPP++V  +L+ EL K      KHEI  WAA+YEH+ R+GQK  FHIEAF+AK M   K
Sbjct:  112 IRSRCLNIRINAPSAEQIVKVLEFIGKKEGLQLPSGFAARIAEKSNRNLRRAILSFETCRVQQYPFTSNQAIPPMDWEEYISEIATDIMKEQSPKRLFQVRGKVYELLINCIPPEIVLKRLLHELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK 281          
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Match: UPI0018ADCD09 (replication factor C subunit 3 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018ADCD09)

HSP 1 Score: 188 bits (478), Expect = 6.300e-56
Identity = 90/170 (52.94%), Postives = 120/170 (70.59%), Query Frame = 1
Query:    1 LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLRRAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRARDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRIGQKPEFHIEAFLAKTMFAIK 510
            +RSRCL VRV APT ++I+ VL+ + K E +++PPG AARIA  S RNLRRA+L  E C+V + P  A+Q +  +DWE+Y+  +A+DI+ +QSP  L   R K+YELLVNCIPP+++  KL+ EL K      KHE+  WAA+YEHK R+GQK  FHIEAF+AK M   K
Sbjct:  177 IRSRCLNVRVNAPTHEQIVKVLEFIAKKESLQLPPGFAARIASQSNRNLRRAILSFETCRVQQYPFTANQAISPLDWEQYVSEIASDIMKEQSPKRLFLVRGKLYELLVNCIPPEIILKKLLSELLKKLDFELKHEVCHWAAYYEHKMRMGQKAIFHIEAFVAKFMSIYK 346          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82258.19239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I9RTX1_ELAGV1.360e-5753.53replication factor C subunit 3 n=4 Tax=commelinids... [more]
A0A6P5FSY3_ANACO1.410e-5753.80replication factor C subunit 5 n=2 Tax=Ananas como... [more]
A0A024TKG1_9STRA2.660e-5756.73Uncharacterized protein n=9 Tax=Aphanomyces TaxID=... [more]
B9SI66_RICCO4.080e-5752.15Replication factor C / DNA polymerase III gamma-ta... [more]
D5ADN5_PICSI1.120e-5652.63AAA domain-containing protein n=1 Tax=Picea sitche... [more]
D8SN98_SELML1.580e-5654.97AAA domain-containing protein n=3 Tax=Selaginella ... [more]
A0A2C9VHU3_MANES4.460e-5650.00AAA domain-containing protein n=37 Tax=Pentapetala... [more]
A9SKH1_PHYPA4.460e-5653.22Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A5J5TSY0_GOSBA6.060e-5651.76Uncharacterized protein n=1 Tax=Gossypium barbaden... [more]
UPI0018ADCD096.300e-5652.94replication factor C subunit 3 n=1 Tax=Dioscorea c... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82258contigM-pyrifera_M_contig82258:400..912 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.9
Seed ortholog evalue3.1e-47
Seed eggNOG ortholog157072.XP_008877631.1
Preferred nameRFC3
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003689,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019985,GO:0022402,GO:0022616,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033170,GO:0033260,GO:0033554,GO:0033683,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042221,GO:0042276,GO:0042592,GO:0042623,GO:0042769,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045935,GO:0046483,GO:0046683,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051606,GO:0051716,GO:0060249,GO:0060255,GO:0061860,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070914,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1904949,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG2035@2759
Ec32 ortholog descriptionReplication factor C small subunit
Ec32 orthologEc-04_003360.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.6083272-CDS-M-pyrifera_M_contig82258:399..9121622816729.6083272-CDS-M-pyrifera_M_contig82258:399..912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82258 400..912 -
1692278144.5372045-CDS-M-pyrifera_M_contig82258:399..9121692278144.5372045-CDS-M-pyrifera_M_contig82258:399..912Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82258 400..912 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82258.19239.1prot_M-pyrifera_M_contig82258.19239.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82258 400..912 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82258.19239.1

>prot_M-pyrifera_M_contig82258.19239.1 ID=prot_M-pyrifera_M_contig82258.19239.1|Name=mRNA_M-pyrifera_M_contig82258.19239.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
LRSRCLGVRVGAPTQKEIMDVLDGVGKSEGVRVPPGLAARIARASERNLR
RAVLMLEACKVAKTPLEASQPVQTMDWERYIVGMAADILADQSPSSLLRA
RDKMYELLVNCIPPDVVFNKLVDELTKGAPEVAKHEIASWAAHYEHKSRI
GQKPEFHIEAFLAKTMFAIKK
back to top

mRNA from alignment at M-pyrifera_M_contig82258:400..912-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82258.19239.1 ID=mRNA_M-pyrifera_M_contig82258.19239.1|Name=mRNA_M-pyrifera_M_contig82258.19239.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig82258:400..912- (Macrocystis pyrifera P11B4 male)
TTGCGATCTCGATGCTTGGGGGTGCGTGTGGGTGCCCCAACCCAAAAAGA GATTATGGATGTGTTGGATGGCGTTGGAAAGAGTGAAGGAGTGCGAGTAC CTCCAGGATTGGCTGCACGGATTGCAAGAGCTTCAGAACGGAATTTGAGA AGGGCTGTTCTGATGCTTGAGGCTTGCAAAGTTGCTAAAACTCCTCTTGA AGCATCACAACCAGTCCAAACGATGGATTGGGAACGATACATTGTTGGAA TGGCAGCAGATATCCTTGCAGATCAATCACCTTCCTCCTTGCTGCGTGCA AGGGACAAAATGTATGAACTCCTAGTCAACTGCATCCCTCCAGACGTGGT CTTCAACAAGCTTGTTGATGAACTCACCAAAGGTGCTCCAGAAGTAGCAA AGCACGAAATTGCTTCGTGGGCTGCACACTATGAACACAAATCTCGAATT GGTCAGAAACCAGAATTCCACATTGAAGCCTTCCTTGCCAAGACCATGTT CGCCATCAAGAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82258:400..912-

>mRNA_M-pyrifera_M_contig82258.19239.1 ID=mRNA_M-pyrifera_M_contig82258.19239.1|Name=mRNA_M-pyrifera_M_contig82258.19239.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig82258:400..912- (Macrocystis pyrifera P11B4 male)
TTGCGATCTCGATGCTTGGGGGTGCGTGTGGGTGCCCCAACCCAAAAAGA
GATTATGGATGTGTTGGATGGCGTTGGAAAGAGTGAAGGAGTGCGAGTAC
CTCCAGGATTGGCTGCACGGATTGCAAGAGCTTCAGAACGGAATTTGAGA
AGGGCTGTTCTGATGCTTGAGGCTTGCAAAGTTGCTAAAACTCCTCTTGA
AGCATCACAACCAGTCCAAACGATGGATTGGGAACGATACATTGTTGGAA
TGGCAGCAGATATCCTTGCAGATCAATCACCTTCCTCCTTGCTGCGTGCA
AGGGACAAAATGTATGAACTCCTAGTCAACTGCATCCCTCCAGACGTGGT
CTTCAACAAGCTTGTTGATGAACTCACCAAAGGTGCTCCAGAAGTAGCAA
AGCACGAAATTGCTTCGTGGGCTGCACACTATGAACACAAATCTCGAATT
GGTCAGAAACCAGAATTCCACATTGAAGCCTTCCTTGCCAAGACCATGTT
CGCCATCAAGAAATTGCGATCTCGATGCTTGGGGGTGCGTGTGGGTGCCC
CAACCCAAAAAGAGATTATGGATGTGTTGGATGGCGTTGGAAAGAGTGAA
GGAGTGCGAGTACCTCCAGGATTGGCTGCACGGATTGCAAGAGCTTCAGA
ACGGAATTTGAGAAGGGCTGTTCTGATGCTTGAGGCTTGCAAAGTTGCTA
AAACTCCTCTTGAAGCATCACAACCAGTCCAAACGATGGATTGGGAACGA
TACATTGTTGGAATGGCAGCAGATATCCTTGCAGATCAATCACCTTCCTC
CTTGCTGCGTGCAAGGGACAAAATGTATGAACTCCTAGTCAACTGCATCC
CTCCAGACGTGGTCTTCAACAAGCTTGTTGATGAACTCACCAAAGGTGCT
CCAGAAGTAGCAAAGCACGAAATTGCTTCGTGGGCTGCACACTATGAACA
CAAATCTCGAATTGGTCAGAAACCAGAATTCCACATTGAAGCCTTCCTTG
CCAAGACCATGTTCGCCATCAAGAAA
back to top