mRNA_M-pyrifera_M_contig82200.19226.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82200.19226.1
Unique NamemRNA_M-pyrifera_M_contig82200.19226.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A7W1VW89_9BACT (Immunoglobulin domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VW89_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-10
Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 1
Query:   46 EIRTGAERALRQAGYNLWEYEYQSICYPNMGWYSWAGLGNMPGPYSWINSLYGWT--VISHEHGHNAGLPHANYGDT------------EYGDVTDIMGGA 306
            ++R  A  A   AGY L  Y++  IC   +  ++WAGLG +  P SWI + Y     V +HE GHN GL HAN+ DT            EYGD+ + MG +
Sbjct:  385 QVRNDARTAAAAAGYVLTNYQFDVICMGLVPGFTWAGLGYVGQPGSWIRASYATHGGVTAHELGHNFGLNHANFWDTGGSSVIGSGASVEYGDIFENMGSS 485          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A5A8CGJ6_CAFRO (Peptidase_M11 domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CGJ6_CAFRO)

HSP 1 Score: 60.8 bits (146), Expect = 2.260e-8
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   94 LWEYEYQSICYPNMGWYSWAGLGNMPGPYSWINSLY---GWTVISHEHGHNAGLPHANYGDTEYGDVTDIMGGAWGPGDFHPLYKMGMHW 354
            L ++++QSI +P++  +SWAGL   PG + W+   Y    + VI HE+GHN GL HA +    YG+  D MG     G +    K  +HW
Sbjct:  419 LSDWDHQSITFPDINTFSWAGLAQAPGSFVWLQGGYRGAAYAVI-HENGHNLGLLHAGFLTNGYGNQNDNMG-CCKRGHWFTQRKAALHW 506          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A5A8CE23_CAFRO (EGF_CA domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CE23_CAFRO)

HSP 1 Score: 60.8 bits (146), Expect = 2.380e-8
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   94 LWEYEYQSICYPNMGWYSWAGLGNMPGPYSWINSLY---GWTVISHEHGHNAGLPHANYGDTEYGDVTDIMGGAWGPGDFHPLYKMGMHW 354
            L ++++QSI +P++  +SWAGL   PG + W+   Y    + VI HE+GHN GL HA +    YG+  D MG     G +    K  +HW
Sbjct:  338 LSDWDHQSITFPDINTFSWAGLAQAPGSFVWLQGGYRGAAYAVI-HENGHNLGLLHAGFLTNGYGNQNDNMG-CCKRGHWFTQRKAALHW 425          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A5A8C026_CAFRO (TNFR-Cys domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C026_CAFRO)

HSP 1 Score: 60.8 bits (146), Expect = 2.410e-8
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   94 LWEYEYQSICYPNMGWYSWAGLGNMPGPYSWINSLY---GWTVISHEHGHNAGLPHANYGDTEYGDVTDIMGGAWGPGDFHPLYKMGMHW 354
            L ++++QSI +P++  +SWAGL   PG + W+   Y    + VI HE+GHN GL HA +    YG+  D MG     G +    K  +HW
Sbjct:  283 LSDWDHQSITFPDINTFSWAGLAQAPGSFVWLQGGYRGAAYAVI-HENGHNLGLLHAGFLTNGYGNQNDNMG-CCKRGHWFTQRKAALHW 370          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: UPI000D591C4E (LPXTG cell wall anchor domain-containing protein n=1 Tax=Streptomyces fragilis TaxID=67301 RepID=UPI000D591C4E)

HSP 1 Score: 58.9 bits (141), Expect = 9.920e-8
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   43 GEIRTGAERALRQAGYNLWE-YEYQSICYP-NMGWYSWAGLGNMPGPYSWINSLYGWT----VISHEHGHNAGLPHANYGDTEYGDVTD 291
            GEI T  ++AL + G    E Y+  S+ +P      SWAGLG++PGPY+WIN LYG      V+ HE GHN GL H        G++ D
Sbjct:  109 GEINTLTQKALAEQGLVRGEDYDSLSMVFPAQKTGCSWAGLGSVPGPYTWIN-LYGTASGLGVVGHEFGHNLGLGHQMRSVCTDGNLVD 196          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A7X7K9N5_9ACTO (Fibronectin type-III domain-containing protein n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A7X7K9N5_9ACTO)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-7
Identity = 28/69 (40.58%), Postives = 36/69 (52.17%), Query Frame = 1
Query:  151 AGLGNMPGPYSWINSLYGWTVISHEHGHNAGLPHANYGD-------------------TEYGDVTDIMG 300
            AG+G+MPG Y+W+N      +++HE GHN GL HANY +                    EYGD TD MG
Sbjct:  212 AGVGSMPGRYTWLNGFIDTDIVTHELGHNLGLEHANYAECASSRTKRITFGKSKRCTMVEYGDTTDTMG 280          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A2M9I1E4_9ACTN (GRAM_POS_ANCHORING domain-containing protein n=9 Tax=Streptomyces TaxID=1883 RepID=A0A2M9I1E4_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 2.520e-7
Identity = 38/89 (42.70%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   43 GEIRTGAERALRQAGYNLWE-YEYQSICYP-NMGWYSWAGLGNMPGPYSWINSLYGWT----VISHEHGHNAGLPHANYGDTEYGDVTD 291
            G I +  + AL   G    E YE  SI +P      +WAGLG++PGPY+WIN LYG      V+ HE GHN GL H        GD+ D
Sbjct:  110 GRINSLTQEALAAKGLVRGEDYESLSIIFPAQKAGCAWAGLGSVPGPYTWIN-LYGTASGLGVLGHEFGHNLGLGHQGRAMCTDGDLVD 197          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A239KD89_9MICO (Gametolysin peptidase M11 n=1 Tax=Micrococcales bacterium KH10 TaxID=1945885 RepID=A0A239KD89_9MICO)

HSP 1 Score: 57.8 bits (138), Expect = 2.700e-7
Identity = 39/110 (35.45%), Postives = 51/110 (46.36%), Query Frame = 1
Query:   37 SSGEIRTGAERALRQAG-----YNLWEYEYQSICYPNMG-WYSWAGLGNMPGPYSWINSLYGWTVISHEHGHNAGLPHANYGDT----------------EYGDVTDIMG 300
            S  ++R   +RA R A      +N   +    I +P+     SWAG G MPG Y W+N     TV++HE GHN GL HAN                    EYGD+ D+MG
Sbjct:  220 SCNDVRLIGQRATRAAAARNRAHNADRFNRVVIYFPHSSSCASWAGRGEMPGKYVWLNGAKQATVLAHELGHNFGLGHANVVQCNKSRTLTRRGHGCKSHEYGDLGDLMG 329          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: A0A652KTD7_9ACTN (GRAM_POS_ANCHORING domain-containing protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A652KTD7_9ACTN)

HSP 1 Score: 56.6 bits (135), Expect = 5.910e-7
Identity = 37/87 (42.53%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   49 IRTGAERALRQAGYNLWE-YEYQSICYP-NMGWYSWAGLGNMPGPYSWINSLYGWT----VISHEHGHNAGLPHANYGDTEYGDVTD 291
            I T    AL   G  + E YE  S+ +P      +WAGLG++PGPY+WIN LYG      V+ HE GHN GL H        GD+ D
Sbjct:   11 INTLTREALAAQGLVMGEDYESLSVIFPAQKTGCAWAGLGSVPGPYTWIN-LYGTAGGLGVLGHEFGHNLGLGHQGRSMCTDGDLVD 96          
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Match: UPI001923612D (hypothetical protein n=2 Tax=Streptomyces TaxID=1883 RepID=UPI001923612D)

HSP 1 Score: 56.6 bits (135), Expect = 6.390e-7
Identity = 37/87 (42.53%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   49 IRTGAERALRQAGYNLWE-YEYQSICYP-NMGWYSWAGLGNMPGPYSWINSLYGWT----VISHEHGHNAGLPHANYGDTEYGDVTD 291
            I T    AL   G  + E YE  S+ +P      +WAGLG++PGPY+WIN LYG      V+ HE GHN GL H        GD+ D
Sbjct:  112 INTLTREALAAQGLVMGEDYESLSVIFPAQKTGCAWAGLGSVPGPYTWIN-LYGTAGGLGVLGHEFGHNLGLGHQGRSMCTDGDLVD 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82200.19226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A7W1VW89_9BACT1.620e-1038.61Immunoglobulin domain-containing protein n=1 Tax=V... [more]
A0A5A8CGJ6_CAFRO2.260e-837.78Peptidase_M11 domain-containing protein n=3 Tax=Sa... [more]
A0A5A8CE23_CAFRO2.380e-837.78EGF_CA domain-containing protein n=3 Tax=Cafeteria... [more]
A0A5A8C026_CAFRO2.410e-837.78TNFR-Cys domain-containing protein n=1 Tax=Cafeter... [more]
UPI000D591C4E9.920e-842.70LPXTG cell wall anchor domain-containing protein n... [more]
A0A7X7K9N5_9ACTO1.940e-740.58Fibronectin type-III domain-containing protein n=1... [more]
A0A2M9I1E4_9ACTN2.520e-742.70GRAM_POS_ANCHORING domain-containing protein n=9 T... [more]
A0A239KD89_9MICO2.700e-735.45Gametolysin peptidase M11 n=1 Tax=Micrococcales ba... [more]
A0A652KTD7_9ACTN5.910e-742.53GRAM_POS_ANCHORING domain-containing protein n=2 T... [more]
UPI001923612D6.390e-742.53hypothetical protein n=2 Tax=Streptomyces TaxID=18... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82200contigM-pyrifera_M_contig82200:564..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.6
Seed ortholog evalue8.6e-09
Seed eggNOG ortholog1396141.BATP01000022_gene416
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domains in Na-Ca exchangers and integrin-beta4
EggNOG OGs46TRJ@74201,COG1404@1,COG1404@2,COG1572@1,COG1572@2,COG4733@1,COG4733@2,COG5184@1,COG5184@2
COG Functional cat.DZ
Best tax levelVerrucomicrobia
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.091327-UTR-M-pyrifera_M_contig82200:563..5691622816729.091327-UTR-M-pyrifera_M_contig82200:563..569Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82200 564..569 +
1692278144.326734-UTR-M-pyrifera_M_contig82200:563..5691692278144.326734-UTR-M-pyrifera_M_contig82200:563..569Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig82200 564..569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.1018934-CDS-M-pyrifera_M_contig82200:569..9171622816729.1018934-CDS-M-pyrifera_M_contig82200:569..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82200 570..917 +
1692278144.3390615-CDS-M-pyrifera_M_contig82200:569..9171692278144.3390615-CDS-M-pyrifera_M_contig82200:569..917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82200 570..917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82200.19226.1prot_M-pyrifera_M_contig82200.19226.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82200 570..917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82200.19226.1

>prot_M-pyrifera_M_contig82200.19226.1 ID=prot_M-pyrifera_M_contig82200.19226.1|Name=mRNA_M-pyrifera_M_contig82200.19226.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MPDVTSSTTPSSGEIRTGAERALRQAGYNLWEYEYQSICYPNMGWYSWAG
LGNMPGPYSWINSLYGWTVISHEHGHNAGLPHANYGDTEYGDVTDIMGGA
WGPGDFHPLYKMGMHW
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mRNA from alignment at M-pyrifera_M_contig82200:564..917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82200.19226.1 ID=mRNA_M-pyrifera_M_contig82200.19226.1|Name=mRNA_M-pyrifera_M_contig82200.19226.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig82200:564..917+ (Macrocystis pyrifera P11B4 male)
TACACAATGCCAGATGTGACATCGTCAACAACGCCATCTTCTGGCGAAAT TCGAACAGGCGCAGAACGTGCCTTACGTCAAGCTGGGTATAATCTGTGGG AGTATGAGTACCAAAGTATCTGCTATCCAAACATGGGATGGTATTCATGG GCAGGATTAGGAAACATGCCAGGTCCATATTCATGGATTAACAGTTTGTA TGGATGGACAGTGATTTCACACGAACATGGACACAATGCTGGACTCCCAC ATGCAAATTATGGTGACACGGAGTACGGAGATGTCACAGATATCATGGGA GGAGCATGGGGTCCTGGTGATTTCCACCCATTGTACAAAATGGGCATGCA TTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82200:564..917+

>mRNA_M-pyrifera_M_contig82200.19226.1 ID=mRNA_M-pyrifera_M_contig82200.19226.1|Name=mRNA_M-pyrifera_M_contig82200.19226.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig82200:564..917+ (Macrocystis pyrifera P11B4 male)
ATGCCAGATGTGACATCGTCAACAACGCCATCTTCTGGCGAAATTCGAAC
AGGCGCAGAACGTGCCTTACGTCAAGCTGGGTATAATCTGTGGGAGTATG
AGTACCAAAGTATCTGCTATCCAAACATGGGATGGTATTCATGGGCAGGA
TTAGGAAACATGCCAGGTCCATATTCATGGATTAACAGTTTGTATGGATG
GACAGTGATTTCACACGAACATGGACACAATGCTGGACTCCCACATGCAA
ATTATGGTGACACGGAGTACGGAGATGTCACAGATATCATGGGAGGAGCA
TGGGGTCCTGGTGATTTCCACCCATTGTACAAAATGGGCATGCATTGGAT
GCCAGATGTGACATCGTCAACAACGCCATCTTCTGGCGAAATTCGAACAG
GCGCAGAACGTGCCTTACGTCAAGCTGGGTATAATCTGTGGGAGTATGAG
TACCAAAGTATCTGCTATCCAAACATGGGATGGTATTCATGGGCAGGATT
AGGAAACATGCCAGGTCCATATTCATGGATTAACAGTTTGTATGGATGGA
CAGTGATTTCACACGAACATGGACACAATGCTGGACTCCCACATGCAAAT
TATGGTGACACGGAGTACGGAGATGTCACAGATATCATGGGAGGAGCATG
GGGTCCTGGTGATTTCCACCCATTGTACAAAATGGGCATGCATTGG
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