mRNA_M-pyrifera_M_contig82147.19213.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82147.19213.1
Unique NamemRNA_M-pyrifera_M_contig82147.19213.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A7X5WWT0_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WWT0_9ACTN)

HSP 1 Score: 299 bits (765), Expect = 2.010e-100
Identity = 136/190 (71.58%), Postives = 158/190 (83.16%), Query Frame = 1
Query:   55 LIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAPERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEEPVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIV 624
            L    E  P A VRACP WT TDLA+H TGVHRRVAHW ANRLA PERWPDH PADP+APWAWCR+GL+ ++ AL DIGP+E VWSW+DR+NGGFYHRRMLHETV+HRWDA+DA G ++HIDA+VA DGI+EI +VG+R+RG G  VDYPDG V+LERTDG +RWR+RA+DGTLLVA   DAG  ADAIV
Sbjct:    1 LFDTCESSPAAPVRACPDWTNTDLAIHVTGVHRRVAHWCANRLAKPERWPDHAPADPAAPWAWCRAGLDRLMLALRDIGPDEAVWSWSDRKNGGFYHRRMLHETVVHRWDAQDASGTAAHIDADVACDGIDEICEVGLRFRGDGSPVDYPDGSVLLERTDGAERWRLRAMDGTLLVARGMDAGEQADAIV 190          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A3M2GV51_ACTSX (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GV51_ACTSX)

HSP 1 Score: 213 bits (543), Expect = 1.640e-64
Identity = 115/236 (48.73%), Postives = 141/236 (59.75%), Query Frame = 1
Query:   37 RRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAP--ERWPDHEPADPSAP--WAWCRSGLELVLGALADIGPEEPVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRGGQ-VTVSGDTDVAEAWARVAP 729
            RR+G+ L+AAA R PDA V ACP WT TDL  H   V+R VA     R +AP      D  P D      W W    LE V   LA + P EPVW+W   R G FYHRRM+HET +HR DAE A G +  +D +VA DGI+EI +VGMRYR  G   D+P   ++LE+TDG  RWR+  VDG + VA   DAG  ADA+V G A++L L LWGR  + ++V GD     AW  VAP
Sbjct:  120 RREGDQLLAAARRAPDAPVAACPDWTVTDLVGHVGEVYRFVARTAGRRASAPVPPGEGDLRPGDDGTDELWRWFTEALEAVAATLAGLDPAEPVWTWVPDRVGAFYHRRMVHETTIHRVDAESATGTAGIVDVDVAADGIDEIIEVGMRYRMRGPVTDHPAASLLLEQTDGPGRWRLSTVDGIMQVARGRDAGDRADAVVRGPADELYLGLWGRPTRALSVIGDERAWRAWQAVAP 355          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A355QLH2_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A355QLH2_9ACTN)

HSP 1 Score: 177 bits (448), Expect = 1.040e-50
Identity = 100/238 (42.02%), Postives = 136/238 (57.14%), Query Frame = 1
Query:   25 LQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHR-RVAHWTANRLAAPERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEEPVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGD-SVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRG-GQVTVSGDTDVAEAWARVAP 729
            L  +  DG ALIAA E  PDA V ACP WT T LA H   V    +A   +   + P+R P  +P +  +        L+  +  L+D  P+ P W+WTD +  G++ RRM HE  +HRWDA++A      IDA++ATDGI E+ +VG+R+R  G   ++YP+G + L RTDG   W + AVDG L+   +   G   DA   G A DLLLYLWGRG   +   GD ++ +AWA VAP
Sbjct:   91 LAHLAADGRALIAAVEAAPDARVAACPEWTNTGLAEHVATVWNFAIAQVESGDPSGPQR-PSSDPDESMSDL------LDRAVAVLSDADPDAPAWNWTDDQRSGWWCRRMAHEASVHRWDAQEAAQTIEPIDADLATDGITELIEVGLRFRPRGGWDLEYPNGSLHLHRTDGEGEWLLTAVDGELVATFEHAKG---DAAARGTASDLLLYLWGRGRATLECFGDEELLDAWASVAP 318          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: W4LE26_9BACT (Uncharacterized protein n=2 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4LE26_9BACT)

HSP 1 Score: 162 bits (409), Expect = 7.770e-46
Identity = 100/241 (41.49%), Postives = 130/241 (53.94%), Query Frame = 1
Query:   19 TVLQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAPERW--PDHEPADPSAPWA-WCRSGLELVLGALADIGPEEPVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRG-GQVTVSGDTDVAEAWARVAP 729
            T LQ I  +G  LI A    P+AAV ACP WT  +LA H   V+  V      R   PE    PD  PA  +   A W R   + VL  L    PE PVW++   +   F+ RRM HET +HRWDA+ A G  + ID+E+A DG+NE+ +V M +R   +    P+  + L RTDG   W + A DGTL V ++   G   DA   G+A+DLLLYLWGRG G +   GD  + +AW  V P
Sbjct:    5 TYLQHIDTEGRTLIDAVAAAPEAAVAACPDWTNRELAKHMGDVYGFVM--AQLRAGNPEARTPPDATPAPDTGDIAPWFRERHQDVLATLRATAPETPVWTFGPDKTAAFFFRRMAHETAVHRWDAQQAAGALTPIDSELALDGVNEVLEVFMLHRRVNEP---PESSLHLHRTDGEGEWMLVAKDGTLTVTNEHAKG---DAAARGSAQDLLLYLWGRGRGSLECYGDDALIDAWGAVTP 237          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A3M2GJQ9_ACTSX (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GJQ9_ACTSX)

HSP 1 Score: 157 bits (397), Expect = 5.660e-44
Identity = 92/239 (38.49%), Postives = 127/239 (53.14%), Query Frame = 1
Query:   25 LQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAPERWPDHEPA--DPSAPWAWCRSGLELVLGALADIGPEEPVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRGGQ--VTVSGDTDVAEAWARVAP 729
            L  +RRDGE L+A A    DAAV  CPGWT  DL  HT  VH  +A     R   P    D  PA   P A   +  + L+ V+ ALAD+ P EP+W+W       FY RR  HET +HR DAE A+   + +DA+VA D ++E++D  + +    + +  P   + L RTDG   W + A    +++ H+   G   DA   G+A DL   LWGR G+  + + GD  V +AWA +AP
Sbjct:    8 LDQLRRDGERLLAVAGGALDAAVPTCPGWTVADLVAHTARVHHAIAAQVRERATGPVPR-DEVPAAPGPDAVVDFGAAALDTVVAALADVDPAEPLWTWGPTPTAAFYIRRAAHETTIHRVDAEAAVDAVTPVDADVAVDLVDELYDTVVPHARRREPLRLPAATLHLHRTDGEGEWLLAADGDRIVMTHEHAKG---DAAARGSASDLATALWGRPGRDRLEIFGDETVFDAWAALAP 242          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A7V9SFY2_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9SFY2_9ACTN)

HSP 1 Score: 155 bits (393), Expect = 1.850e-43
Identity = 96/236 (40.68%), Postives = 128/236 (54.24%), Query Frame = 1
Query:   25 LQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAP-ERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEEPVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDV-----GMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRG--GQVTVSGDTDVAE 708
            + ++R DG AL+ AA    D  V ACP WT  +L VHT GVHR      A RLA P E  P+  P D     AW + GLE ++  L+   P+EPVWSW+ R+  GF  RRM  ET +HRWDA+DA+G +  ID ++A DG++E  +V      +   G+G+++        L RTDG   W VR     + V    + G   DA + GNA DLLL LW R    ++ V GD  V E
Sbjct:    1 MDLLRSDGAALLEAARSDLDRRVPACPDWTERELLVHTGGVHRFWGDIAARRLADPSESRPEPAPDDDPGIAAWYQDGLEKLVDTLSGSAPDEPVWSWSARKEIGFIQRRMPQETAVHRWDAQDAVGDADPIDGQLAVDGVDEWLEVFGPAQDVTPNGAGETIH-------LHRTDGEGEWLVRLQADGIEVTRGHEKG---DAALRGNASDLLLALWRRIPLDRLEVLGDRAVTE 226          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A6B0WMQ1_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WMQ1_9ACTN)

HSP 1 Score: 152 bits (383), Expect = 1.430e-41
Identity = 96/247 (38.87%), Postives = 125/247 (50.61%), Query Frame = 1
Query:   10 DLPTVLQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAP---ERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEEPVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGR----GGQVTVSGDTDVAEAWARVAP 729
            D   ++  I  DG  LI  A     AAV  C  WT  DLA H   VH  V  + A R   P   E+ P     D +  +A     L+ V+ ALA I P  PVW+W+ R + GFY RRMLHET +HRWDAE+A+G ++ +D E   DG++E F+  +         D P G + + RTDG   W V A DG  +V     A    DA V G A  L L +W R       ++V GD  VA+AWA +AP
Sbjct:   27 DSEAIVNQIETDGRRLIEVARSDLGAAVPTCGDWTLRDLAGHMGWVHALVGSYVAGRATEPLSREQMPQVPDDDSAVDFA--ADALDRVVAALAGIDPGTPVWNWSPRPDAGFYFRRMLHETSVHRWDAENAVGETAPVDGEQGRDGVDEFFEFVLPNAQQRKRRDLPAGSLHVHRTDGEGEWIVHA-DGDEVVME--RAHVKGDAAVRGPAGALFLAMWNRLPLDDDSLSVMGDEQVAQAWAALAP 268          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A351K9J5_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiia TaxID=84992 RepID=A0A351K9J5_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 1.810e-41
Identity = 92/238 (38.66%), Postives = 126/238 (52.94%), Query Frame = 1
Query:   25 LQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAPERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEEPVWSWT--DRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRG-GQVTVSGDTDVAEAWARVAP 729
            L  IR +G AL+AA    PDA ++ CP W  T LA H   V   +A   +   A+P+R    +P D S P       L+ +L  L+   P  P W+W   + R   +  RRM+HET +HRWDAE+A G +  IDA++A DGI+E  DV  RY+  G +  YP+  + L RTDG   W +  VD  L V ++   G   DA V G A DL L++W R    +   GD  V EAW  ++P
Sbjct:   23 LSAIRDEGRALLAAVANAPDARIQHCPDWDNTGLADHMRNVWGFMAAQVS--AASPDRPARPDPDDASTP----DQTLDSLLDILSGAEPTAPAWNWCPEEGRTVAWILRRMVHETAIHRWDAENAAGDAEPIDADLAADGISEALDVAWRYQMRGPTTGYPEESLHLHRTDGQGEWLLTVVDDVLNVTNEHGRG---DAAVRGTASDLALFMWNRRLPGLEYFGDEAVVEAWLAISP 251          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A520Y4X9_9ACTN (Maleylpyruvate isomerase family mycothiol-dependent enzyme n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y4X9_9ACTN)

HSP 1 Score: 148 bits (373), Expect = 2.220e-40
Identity = 94/242 (38.84%), Postives = 124/242 (51.24%), Query Frame = 1
Query:   25 LQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAA-----PERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEEPVWSWT-DRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRGGQ-VTVSGDTDVAEAWARVAP 729
            L  + R+  A IAA +   D A+  C  WT  DLA H   V    A  TAN  AA     P     H P D +    W       +L  L   GPEE  WS+  D +  GF+ RRM+HET +HRWDAE+ +G +  +D ++A DGINE   VG+RY     +  YP   + L RTDG   W +R  +  + V  +   G   DA V G+AE LLL++WGR  + V + G T  A+AW  VAP
Sbjct:    7 LAAVERESAAFIAAVDGALDYAIPTCGHWTMRDLAGHLGKVW---AIATANVTAAIDAPTPPGESGHMPDDDAQIVPWLNERRSAMLNTLRATGPEEAAWSFAPDNQTAGFWQRRMVHETAVHRWDAENGLGEARSLDPDLACDGINEYLAVGLRYSSGKPNRIYPSETLHLHRTDGDGEWMLRGNEEQVEVTEEHAKG---DAAVRGSAEALLLWIWGRSDEDVEILGATHAADAWQAVAP 242          
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Match: A0A3C2DEQ5_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2DEQ5_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 7.060e-40
Identity = 87/243 (35.80%), Postives = 122/243 (50.21%), Query Frame = 1
Query:   10 DLPTVLQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVHRRVAHWTANRLAAPERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEEPVWSWT--DRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINEIFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDAGTAADAIVHGNAEDLLLYLWGRG-GQVTVSGDTDVAEAWARVAP 729
            D   +L  +RR+G AL+AAAE  P A++  CP W    +  H  GV      WT          PD  P  P    +     L+ ++ ALA+  P+ P W+W   D R  G+  RRM HE  +HRWD E+A+G +  ID ++A DG++EI DV  RY+  G   DYP+  + L  TDG   W + + D +L+VA +   G   D    G A +L L +WGR    + V GD     AW  + P
Sbjct:    2 DGEALLIAVRREGNALLAAAESDPTASIEHCPDWDIAAMVEHVAGV------WTFMTAQLAAASPD-SPTRPERDESPAAERLDRLVTALAETDPQTPCWNWCAEDGRRAGWIGRRMAHENAIHRWDVENAVGEAPPIDGDLARDGVDEILDVAWRYQMRGPVTDYPNSTLHLHCTDGEGEWLLSSEDDSLVVAREHAKG---DVAARGTASELFLLVWGRRPAGIEVFGDEASLAAWLALTP 234          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82147.19213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WWT0_9ACTN2.010e-10071.58Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A3M2GV51_ACTSX1.640e-6448.73Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A355QLH2_9ACTN1.040e-5042.02Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
W4LE26_9BACT7.770e-4641.49Uncharacterized protein n=2 Tax=Candidatus Entothe... [more]
A0A3M2GJQ9_ACTSX5.660e-4438.49Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A7V9SFY2_9ACTN1.850e-4340.68Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A6B0WMQ1_9ACTN1.430e-4138.87Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A351K9J5_9ACTN1.810e-4138.66Uncharacterized protein n=3 Tax=Acidimicrobiia Tax... [more]
A0A520Y4X9_9ACTN2.220e-4038.84Maleylpyruvate isomerase family mycothiol-dependen... [more]
A0A3C2DEQ5_9ACTN7.060e-4035.80Uncharacterized protein n=3 Tax=Acidimicrobiaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82147contigM-pyrifera_M_contig82147:152..883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score138.3
Seed ortholog evalue4.9e-30
Seed eggNOG ortholog1463887.KL590052_gene5200
Hectar predicted targeting categoryother localisation
EggNOG free text desc.MDMPI C-terminal domain
EggNOG OGs2GJ1X@201174,COG3550@1,COG3550@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size732
Cds size732
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.4733324-CDS-M-pyrifera_M_contig82147:151..8831622816728.4733324-CDS-M-pyrifera_M_contig82147:151..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82147 152..883 -
1692278144.0264027-CDS-M-pyrifera_M_contig82147:151..8831692278144.0264027-CDS-M-pyrifera_M_contig82147:151..883Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82147 152..883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82147.19213.1prot_M-pyrifera_M_contig82147.19213.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82147 152..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82147.19213.1

>prot_M-pyrifera_M_contig82147.19213.1 ID=prot_M-pyrifera_M_contig82147.19213.1|Name=mRNA_M-pyrifera_M_contig82147.19213.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=244bp
MSPDLPTVLQMIRRDGEALIAAAERMPDAAVRACPGWTTTDLAVHTTGVH
RRVAHWTANRLAAPERWPDHEPADPSAPWAWCRSGLELVLGALADIGPEE
PVWSWTDRRNGGFYHRRMLHETVMHRWDAEDAIGISSHIDAEVATDGINE
IFDVGMRYRGSGDSVDYPDGGVVLERTDGTDRWRVRAVDGTLLVAHDGDA
GTAADAIVHGNAEDLLLYLWGRGGQVTVSGDTDVAEAWARVAP*
back to top

mRNA from alignment at M-pyrifera_M_contig82147:152..883-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82147.19213.1 ID=mRNA_M-pyrifera_M_contig82147.19213.1|Name=mRNA_M-pyrifera_M_contig82147.19213.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig82147:152..883- (Macrocystis pyrifera P11B4 male)
ATGTCCCCCGATCTCCCCACTGTGCTCCAGATGATCCGCCGCGACGGCGA GGCGCTCATCGCCGCCGCCGAGCGAATGCCCGACGCTGCGGTGCGGGCGT GTCCTGGCTGGACCACGACCGACCTCGCCGTCCACACGACCGGCGTGCAC CGCCGCGTCGCCCACTGGACGGCCAACCGGCTCGCTGCGCCCGAGCGCTG GCCCGACCACGAGCCGGCCGATCCATCGGCGCCATGGGCATGGTGCCGCA GCGGTCTCGAGCTCGTGCTCGGGGCGCTGGCCGACATCGGCCCCGAGGAG CCGGTGTGGTCCTGGACCGACCGGCGCAACGGCGGCTTCTATCACCGCCG CATGCTCCACGAAACCGTCATGCATCGTTGGGACGCCGAGGACGCCATCG GCATCTCGTCACACATCGACGCCGAGGTCGCGACCGACGGCATCAACGAG ATCTTCGACGTCGGCATGCGCTATCGCGGCAGCGGCGACAGCGTCGACTA CCCCGACGGCGGTGTGGTGCTCGAACGCACCGATGGCACCGACCGCTGGC GTGTCCGGGCCGTCGACGGCACCCTGCTCGTGGCCCACGACGGCGATGCC GGCACCGCGGCCGATGCCATCGTGCACGGCAACGCCGAAGACCTGCTGCT GTACCTCTGGGGCCGGGGTGGACAGGTCACCGTCAGCGGCGACACCGACG TCGCCGAGGCGTGGGCACGCGTCGCTCCCTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig82147:152..883-

>mRNA_M-pyrifera_M_contig82147.19213.1 ID=mRNA_M-pyrifera_M_contig82147.19213.1|Name=mRNA_M-pyrifera_M_contig82147.19213.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1464bp|location=Sequence derived from alignment at M-pyrifera_M_contig82147:152..883- (Macrocystis pyrifera P11B4 male)
ATGTCCCCCGATCTCCCCACTGTGCTCCAGATGATCCGCCGCGACGGCGA
GGCGCTCATCGCCGCCGCCGAGCGAATGCCCGACGCTGCGGTGCGGGCGT
GTCCTGGCTGGACCACGACCGACCTCGCCGTCCACACGACCGGCGTGCAC
CGCCGCGTCGCCCACTGGACGGCCAACCGGCTCGCTGCGCCCGAGCGCTG
GCCCGACCACGAGCCGGCCGATCCATCGGCGCCATGGGCATGGTGCCGCA
GCGGTCTCGAGCTCGTGCTCGGGGCGCTGGCCGACATCGGCCCCGAGGAG
CCGGTGTGGTCCTGGACCGACCGGCGCAACGGCGGCTTCTATCACCGCCG
CATGCTCCACGAAACCGTCATGCATCGTTGGGACGCCGAGGACGCCATCG
GCATCTCGTCACACATCGACGCCGAGGTCGCGACCGACGGCATCAACGAG
ATCTTCGACGTCGGCATGCGCTATCGCGGCAGCGGCGACAGCGTCGACTA
CCCCGACGGCGGTGTGGTGCTCGAACGCACCGATGGCACCGACCGCTGGC
GTGTCCGGGCCGTCGACGGCACCCTGCTCGTGGCCCACGACGGCGATGCC
GGCACCGCGGCCGATGCCATCGTGCACGGCAACGCCGAAGACCTGCTGCT
GTACCTCTGGGGCCGGGGTGGACAGGTCACCGTCAGCGGCGACACCGACG
TCGCCGAGGCGTGGGCACGCGTCGCTCCCTAGATGTCCCCCGATCTCCCC
ACTGTGCTCCAGATGATCCGCCGCGACGGCGAGGCGCTCATCGCCGCCGC
CGAGCGAATGCCCGACGCTGCGGTGCGGGCGTGTCCTGGCTGGACCACGA
CCGACCTCGCCGTCCACACGACCGGCGTGCACCGCCGCGTCGCCCACTGG
ACGGCCAACCGGCTCGCTGCGCCCGAGCGCTGGCCCGACCACGAGCCGGC
CGATCCATCGGCGCCATGGGCATGGTGCCGCAGCGGTCTCGAGCTCGTGC
TCGGGGCGCTGGCCGACATCGGCCCCGAGGAGCCGGTGTGGTCCTGGACC
GACCGGCGCAACGGCGGCTTCTATCACCGCCGCATGCTCCACGAAACCGT
CATGCATCGTTGGGACGCCGAGGACGCCATCGGCATCTCGTCACACATCG
ACGCCGAGGTCGCGACCGACGGCATCAACGAGATCTTCGACGTCGGCATG
CGCTATCGCGGCAGCGGCGACAGCGTCGACTACCCCGACGGCGGTGTGGT
GCTCGAACGCACCGATGGCACCGACCGCTGGCGTGTCCGGGCCGTCGACG
GCACCCTGCTCGTGGCCCACGACGGCGATGCCGGCACCGCGGCCGATGCC
ATCGTGCACGGCAACGCCGAAGACCTGCTGCTGTACCTCTGGGGCCGGGG
TGGACAGGTCACCGTCAGCGGCGACACCGACGTCGCCGAGGCGTGGGCAC
GCGTCGCTCCCTAG
back to top