mRNA_M-pyrifera_M_contig82107.19207.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig82107.19207.1
Unique NamemRNA_M-pyrifera_M_contig82107.19207.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Match: UPI00201E76E1 (uncharacterized protein LOC124111997 isoform X1 n=9 Tax=Haliotis TaxID=6452 RepID=UPI00201E76E1)

HSP 1 Score: 88.2 bits (217), Expect = 7.910e-17
Identity = 66/198 (33.33%), Postives = 95/198 (47.98%), Query Frame = 1
Query:    1 QPASGTDPSEVLLNEGGFQLPLF-QGPPDRRTVKLSGNALTESRAALVPCSTLLVRIVRVPAIDDVAP-ERSRVPRREWMRLGLQFPPPPYASSAYDSQRCLVTPGEAALYPKRADLTSPTQRQALELVTD--DSSLDDTNPPPSPTQPDGVLLSWISKKMKAAPSRMLDYGYLCPIDPNEGFDVAIDAAQNLPEGVF 582
            QPA      +V LN G  QL ++ QGP        S  ++  +    VPC+++LVRI +VP      P E S+VP+ +W+RLGL  P P Y+   Y S +CL T GE+ L+      T  + RQA+   T   DS L       S    +  + + ++K M   P    D  ++    P  G  VA+D+A NLP   F
Sbjct: 1232 QPAIDRQGLQVSLNTGAHQLRVYNQGP--NGVDPFSDTSMRTNNTRFVPCTSMLVRITKVPKGPQGKPLECSKVPQADWLRLGLWQPRPKYSDRIYYSMKCLPTKGESKLFHSLMKRTPISVRQAVARNTQAKDSFLR------SDKNMEQYIRNQLTKSMDTKPLEQ-DLNFIAEYSPKHGVKVALDSAVNLPWSNF 1420          
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Match: UPI001E1D33CD (uncharacterized protein LOC123523797 isoform X13 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D33CD)

HSP 1 Score: 87.8 bits (216), Expect = 1.060e-16
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   25 SEVLLNEGGFQLPLF-QGPPDRRTVKLSGNALTESRAALVPCSTLLVRIVRVP-AIDDVAPERSRVPRREWMRLGLQFPPPPYASSAYDSQRCLVTPGEAALYPKRADLTSPTQRQALELVTDDSSLDDTNPPPSPTQPDGVLLSWISKKMKAAPSRML---DYGYLCPIDPNEGFDVAIDAAQNLPEGVF 582
            S+V LNEG  QL L+ QGP       L+ + L ++   ++PC+++LVR+V+V       A E S+VP+ +W+R+GL  P P Y+   Y S + + T GE  L+      T  T R+ + LV             S  + D  +  +I  ++   P       D  ++C   P  G  VAID+A NLP   F
Sbjct:  958 SQVSLNEGAHQLRLYAQGP--NGVDPLTESCLRDAGTRIIPCASVLVRLVKVTRGSGGKALESSKVPKGDWLRMGLWQPRPKYSDRVYYSTKAMPTRGETRLFHSMMRRTRRTIREVIALVASAKE--------SFLRSDKNMEEYIRNQLTKTPDTKTLEQDLNFVCQYSPKHGIKVAIDSAVNLPWSNF 1138          
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Match: UPI001E1DCA1C (uncharacterized protein LOC123523797 isoform X1 n=14 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DCA1C)

HSP 1 Score: 87.8 bits (216), Expect = 1.070e-16
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   25 SEVLLNEGGFQLPLF-QGPPDRRTVKLSGNALTESRAALVPCSTLLVRIVRVP-AIDDVAPERSRVPRREWMRLGLQFPPPPYASSAYDSQRCLVTPGEAALYPKRADLTSPTQRQALELVTDDSSLDDTNPPPSPTQPDGVLLSWISKKMKAAPSRML---DYGYLCPIDPNEGFDVAIDAAQNLPEGVF 582
            S+V LNEG  QL L+ QGP       L+ + L ++   ++PC+++LVR+V+V       A E S+VP+ +W+R+GL  P P Y+   Y S + + T GE  L+      T  T R+ + LV             S  + D  +  +I  ++   P       D  ++C   P  G  VAID+A NLP   F
Sbjct: 1164 SQVSLNEGAHQLRLYAQGP--NGVDPLTESCLRDAGTRIIPCASVLVRLVKVTRGSGGKALESSKVPKGDWLRMGLWQPRPKYSDRVYYSTKAMPTRGETRLFHSMMRRTRRTIREVIALVASAKE--------SFLRSDKNMEEYIRNQLTKTPDTKTLEQDLNFVCQYSPKHGIKVAIDSAVNLPWSNF 1344          
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Match: UPI00148AD04C (uncharacterized protein LOC117682899 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AD04C)

HSP 1 Score: 81.3 bits (199), Expect = 1.780e-14
Identity = 59/185 (31.89%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   28 EVLLNEGGFQLPLF-QGPPDRRTVKLSGNALTESRAALVPCSTLLVRIVRVP-AIDDVAPERSRVPRREWMRLGLQFPPPPYASSAYDSQRCLVTPGEAALYPKRADLTSPTQRQALELVTDDSSLDDTNPPPSPTQPDGVLLSWISKKMKAAPSRMLDYG--YLCPIDPNEGFDVAIDAAQNLP 570
            +V LNE   QL L+ QGP       L+ + + ++    VPC++LLVR+ RV       A E+S+VP+ +W++LGL  P P Y    Y S +C+ + GE+ L+       +   R A+      +     N        D  L  +I KK+    +  LD    Y+C  +P +G  VA+D A NLP
Sbjct:  419 QVSLNECAHQLRLYSQGP--NGVDPLTESVIRDAGVRYVPCASLLVRLTRVAKGSSGKALEQSKVPKADWLKLGLYQPRPRYTDIMYISTKCMPSKGESMLFHSMMRRPAIKVRDAVAKTAQANESFYYN--------DKNLEEYIRKKLTKGDNIPLDIDLIYICQYNPKQGIKVAVDGAMNLP 593          
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Match: V4BHK2_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BHK2_LOTGI)

HSP 1 Score: 81.3 bits (199), Expect = 1.850e-14
Identity = 59/189 (31.22%), Postives = 87/189 (46.03%), Query Frame = 1
Query:   28 EVLLNEGGFQLPLFQGPPDRRTVKLSGNALTESRAALVPCSTLLVRIVRVPAIDDVAP-ERSRVPRREWMRLGLQFPPPPYASSAYDSQRCLVTPGEAALYP---KRADLTSPTQRQALELVTDDSSLDDTNPPPSPTQPDGVLLSWISKKMKAAPSRMLDYGYLCPIDPNEGFDVAIDAAQNLPEGVF 582
            ++ LN G  QL L+   P+     LS   L  +   L+PCS++LVRI +VP   D  P E S+VP+ +W+RLGL  P P Y    Y S +C    GE  L     KR  +++          T      D N        +  + + ++K +   P    D   +C  +P  GF ++ID+A NLP   F
Sbjct:  527 QISLNTGAHQLRLYSTGPNG-VDPLSEGYLRNNNIRLIPCSSVLVRIAKVPKGPDGQPLESSKVPQSDWLRLGLWQPRPKYTDRIYYSMKCQPLKGENKLLHGMMKRPQISTRDAVAQHAQATTGFMKSDKNM-------EQYIKNQLTKSLDVRPLEQ-DLNLICQYNPKHGFKISIDSAVNLPWSNF 706          
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Match: A0A7S2RR12_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RR12_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.180e-14
Identity = 65/213 (30.52%), Postives = 93/213 (43.66%), Query Frame = 1
Query:    1 QPASGTDPSEVLLNEGGFQLPLFQGPPDRRTVKLSGNALTESRAALVPCSTLLVRIVRVPAIDDVAPERS--RVPRREWMRLGLQFPPPPY--------------ASSAYDSQRCLVTPGEAALYPKRAD----LTSPTQRQALEL-VTDDSSLDDTNPPPSPTQPDGVLLSWISKKMKAAPSRMLDYGYLCPIDPNEGFDVAIDAAQNLPEG 576
            QPAS T   E +LN+G FQLPL+Q  P ++    +   + ++    VPC+T+LVRIV      D     S   VP  EW + GL  P P Y              ++  YDS RC+  P E  LY    D    L       A    V +D  +D           D  LL+WI  +++  P  M++  ++ P     GF V+I+   N+  G
Sbjct: 1243 QPASSTV-QEYVLNQGAFQLPLYQSQPTKQG-DFNTKHMIDNNFFRVPCATVLVRIVPAKKSKDGLSIMSLEEVPEEEWEKRGLVIPAPDYLAISKKQKKKKQKPSNEGYDSSRCVPLPCEEHLYHHLQDREDMLVGEVSTYAKRSDVAEDQGVD--------VMEDDDLLAWIRGRLEG-PEGMVNNQHIAPYQAETGFKVSIERITNVKAG 1444          
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Match: A0A8K1FDQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDQ3_PYTOL)

HSP 1 Score: 77.0 bits (188), Expect = 5.840e-13
Identity = 55/183 (30.05%), Postives = 77/183 (42.08%), Query Frame = 1
Query:   25 SEVLLNEGGFQLPLFQGPPDRRTVKLSGNALTESRAALVPCSTLLVRIVRVPAIDD--VAPERSRVPRREWMRLGLQFPPPPYASSAYDSQRCLVTPGEAALYPKRADLTSPTQRQALELVTDDSSLDDTNPPPSPTQPDGVLLSWISKKMKAAPSRMLDYGYLCPIDPNEGFDVAIDAAQNL 567
            ++ +LNEGGFQLPL+       T +   +A   S    +PC+T+L+RI       D      R++ PR EW + GL  P PPY S  YDS  C  T  E  +Y +       +  Q LE +                   G+  S +   +K  P   LD     P     GF VA+D   N+
Sbjct:  943 TQFVLNEGGFQLPLYTSIEFSDTKEF--DATCTSTFPRIPCATILLRIKCAAMSKDGLTILSRTQCPREEWAQHGLLDPAPPYHSGYYDSTVCAPTAIETKMYQQLEQRKPISCAQVLERI-------------------GLTESMVDGSLKTKPQAFLDLRTAFPYHSELGFRVAVDGLHNI 1104          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig82107.19207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00201E76E17.910e-1733.33uncharacterized protein LOC124111997 isoform X1 n=... [more]
UPI001E1D33CD1.060e-1631.94uncharacterized protein LOC123523797 isoform X13 n... [more]
UPI001E1DCA1C1.070e-1631.94uncharacterized protein LOC123523797 isoform X1 n=... [more]
UPI00148AD04C1.780e-1431.89uncharacterized protein LOC117682899 n=1 Tax=Crass... [more]
V4BHK2_LOTGI1.850e-1431.22Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
A0A7S2RR12_9STRA9.180e-1430.52Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8K1FDQ3_PYTOL5.840e-1330.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig82107contigM-pyrifera_M_contig82107:134..715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue9e-19
Seed eggNOG ortholog529818.AMSG_06425T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2CP3B@1,2QZQR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.227299-CDS-M-pyrifera_M_contig82107:133..7151622816728.227299-CDS-M-pyrifera_M_contig82107:133..715Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82107 134..715 +
1692278143.9121625-CDS-M-pyrifera_M_contig82107:133..7151692278143.9121625-CDS-M-pyrifera_M_contig82107:133..715Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig82107 134..715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig82107.19207.1prot_M-pyrifera_M_contig82107.19207.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig82107 134..715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig82107.19207.1

>prot_M-pyrifera_M_contig82107.19207.1 ID=prot_M-pyrifera_M_contig82107.19207.1|Name=mRNA_M-pyrifera_M_contig82107.19207.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
QPASGTDPSEVLLNEGGFQLPLFQGPPDRRTVKLSGNALTESRAALVPCS
TLLVRIVRVPAIDDVAPERSRVPRREWMRLGLQFPPPPYASSAYDSQRCL
VTPGEAALYPKRADLTSPTQRQALELVTDDSSLDDTNPPPSPTQPDGVLL
SWISKKMKAAPSRMLDYGYLCPIDPNEGFDVAIDAAQNLPEGVF
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mRNA from alignment at M-pyrifera_M_contig82107:134..715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig82107.19207.1 ID=mRNA_M-pyrifera_M_contig82107.19207.1|Name=mRNA_M-pyrifera_M_contig82107.19207.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig82107:134..715+ (Macrocystis pyrifera P11B4 male)
CAACCTGCTTCTGGGACAGATCCAAGTGAAGTGTTGTTGAATGAAGGAGG ATTTCAACTCCCATTGTTCCAAGGTCCACCTGACCGCAGGACTGTAAAGT TGTCTGGAAATGCGTTGACAGAATCCAGAGCAGCTCTTGTTCCATGCTCA ACATTGCTTGTACGAATTGTACGTGTTCCTGCAATTGATGATGTAGCACC TGAACGATCAAGAGTACCAAGACGAGAATGGATGCGCCTTGGTCTGCAAT TTCCACCACCCCCTTATGCATCATCTGCCTATGATTCGCAACGATGTTTG GTGACTCCAGGTGAAGCTGCACTGTATCCCAAGCGTGCTGATTTAACGTC TCCAACGCAACGTCAAGCGCTAGAACTTGTCACAGATGATTCTTCGTTGG ATGACACGAACCCACCACCAAGCCCAACTCAACCAGATGGAGTGTTATTG TCATGGATTTCGAAGAAGATGAAAGCTGCACCGTCTCGTATGTTAGACTA TGGGTACTTGTGTCCTATTGATCCCAATGAAGGGTTTGATGTTGCAATTG ATGCTGCCCAAAATTTGCCAGAAGGTGTGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig82107:134..715+

>mRNA_M-pyrifera_M_contig82107.19207.1 ID=mRNA_M-pyrifera_M_contig82107.19207.1|Name=mRNA_M-pyrifera_M_contig82107.19207.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig82107:134..715+ (Macrocystis pyrifera P11B4 male)
CAACCTGCTTCTGGGACAGATCCAAGTGAAGTGTTGTTGAATGAAGGAGG
ATTTCAACTCCCATTGTTCCAAGGTCCACCTGACCGCAGGACTGTAAAGT
TGTCTGGAAATGCGTTGACAGAATCCAGAGCAGCTCTTGTTCCATGCTCA
ACATTGCTTGTACGAATTGTACGTGTTCCTGCAATTGATGATGTAGCACC
TGAACGATCAAGAGTACCAAGACGAGAATGGATGCGCCTTGGTCTGCAAT
TTCCACCACCCCCTTATGCATCATCTGCCTATGATTCGCAACGATGTTTG
GTGACTCCAGGTGAAGCTGCACTGTATCCCAAGCGTGCTGATTTAACGTC
TCCAACGCAACGTCAAGCGCTAGAACTTGTCACAGATGATTCTTCGTTGG
ATGACACGAACCCACCACCAAGCCCAACTCAACCAGATGGAGTGTTATTG
TCATGGATTTCGAAGAAGATGAAAGCTGCACCGTCTCGTATGTTAGACTA
TGGGTACTTGTGTCCTATTGATCCCAATGAAGGGTTTGATGTTGCAATTG
ATGCTGCCCAAAATTTGCCAGAAGGTGTGTTTCAACCTGCTTCTGGGACA
GATCCAAGTGAAGTGTTGTTGAATGAAGGAGGATTTCAACTCCCATTGTT
CCAAGGTCCACCTGACCGCAGGACTGTAAAGTTGTCTGGAAATGCGTTGA
CAGAATCCAGAGCAGCTCTTGTTCCATGCTCAACATTGCTTGTACGAATT
GTACGTGTTCCTGCAATTGATGATGTAGCACCTGAACGATCAAGAGTACC
AAGACGAGAATGGATGCGCCTTGGTCTGCAATTTCCACCACCCCCTTATG
CATCATCTGCCTATGATTCGCAACGATGTTTGGTGACTCCAGGTGAAGCT
GCACTGTATCCCAAGCGTGCTGATTTAACGTCTCCAACGCAACGTCAAGC
GCTAGAACTTGTCACAGATGATTCTTCGTTGGATGACACGAACCCACCAC
CAAGCCCAACTCAACCAGATGGAGTGTTATTGTCATGGATTTCGAAGAAG
ATGAAAGCTGCACCGTCTCGTATGTTAGACTATGGGTACTTGTGTCCTAT
TGATCCCAATGAAGGGTTTGATGTTGCAATTGATGCTGCCCAAAATTTGC
CAGAAGGTGTGTTT
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