mRNA_M-pyrifera_M_contig821.19206.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig821.19206.1
Unique NamemRNA_M-pyrifera_M_contig821.19206.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig821.19206.1 vs. uniprot
Match: A0A1Q9F7G0_SYMMI (Pentatricopeptide repeat-containing protein, chloroplastic n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9F7G0_SYMMI)

HSP 1 Score: 48.1 bits (113), Expect = 6.760e-5
Identity = 21/53 (39.62%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 VIMSCEKSAQWEVALSLLREMSETGVQANSVSYNSCLAALAEAGEWERASALL 159
            V+ +C +   W++A+SLL++M+ T +Q + +S+N  L A A A  W+RA A+L
Sbjct: 3067 VLQTCRRDGSWQMAVSLLQQMTWTSIQPDEISFNELLGAFAAAVSWQRALAVL 3119
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig821.19206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Q9F7G0_SYMMI6.760e-539.62Pentatricopeptide repeat-containing protein, chlor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig821contigM-pyrifera_M_contig821:14355..14525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.1791594-UTR-M-pyrifera_M_contig821:14354..143601622816728.1791594-UTR-M-pyrifera_M_contig821:14354..14360Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig821 14355..14360 +
1692278143.8902805-UTR-M-pyrifera_M_contig821:14354..143601692278143.8902805-UTR-M-pyrifera_M_contig821:14354..14360Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig821 14355..14360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.1941679-CDS-M-pyrifera_M_contig821:14360..145251622816728.1941679-CDS-M-pyrifera_M_contig821:14360..14525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig821 14361..14525 +
1692278143.9011533-CDS-M-pyrifera_M_contig821:14360..145251692278143.9011533-CDS-M-pyrifera_M_contig821:14360..14525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig821 14361..14525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig821.19206.1prot_M-pyrifera_M_contig821.19206.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig821 14361..14525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig821.19206.1

>prot_M-pyrifera_M_contig821.19206.1 ID=prot_M-pyrifera_M_contig821.19206.1|Name=mRNA_M-pyrifera_M_contig821.19206.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MSCEKSAQWEVALSLLREMSETGVQANSVSYNSCLAALAEAGEWERASAL
LEEMP
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mRNA from alignment at M-pyrifera_M_contig821:14355..14525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig821.19206.1 ID=mRNA_M-pyrifera_M_contig821.19206.1|Name=mRNA_M-pyrifera_M_contig821.19206.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig821:14355..14525+ (Macrocystis pyrifera P11B4 male)
GTGATCATGTCGTGCGAGAAGTCCGCGCAGTGGGAGGTAGCCCTCTCGCT
GCTCCGAGAGATGTCTGAGACCGGAGTCCAGGCGAACTCGGTGTCCTACA
ACAGTTGCCTGGCAGCGCTAGCGGAGGCGGGGGAGTGGGAGAGGGCGTCG
GCTCTCCTGGAAGAGATGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig821:14355..14525+

>mRNA_M-pyrifera_M_contig821.19206.1 ID=mRNA_M-pyrifera_M_contig821.19206.1|Name=mRNA_M-pyrifera_M_contig821.19206.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig821:14355..14525+ (Macrocystis pyrifera P11B4 male)
ATGTCGTGCGAGAAGTCCGCGCAGTGGGAGGTAGCCCTCTCGCTGCTCCG
AGAGATGTCTGAGACCGGAGTCCAGGCGAACTCGGTGTCCTACAACAGTT
GCCTGGCAGCGCTAGCGGAGGCGGGGGAGTGGGAGAGGGCGTCGGCTCTC
CTGGAAGAGATGCCGATGTCGTGCGAGAAGTCCGCGCAGTGGGAGGTAGC
CCTCTCGCTGCTCCGAGAGATGTCTGAGACCGGAGTCCAGGCGAACTCGG
TGTCCTACAACAGTTGCCTGGCAGCGCTAGCGGAGGCGGGGGAGTGGGAG
AGGGCGTCGGCTCTCCTGGAAGAGATGCCG
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