mRNA_M-pyrifera_M_contig8206.19196.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8206.19196.1
Unique NamemRNA_M-pyrifera_M_contig8206.19196.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8206.19196.1 vs. uniprot
Match: D7FNR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR2_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 7.560e-11
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:    3 IPLKISGYVMYGFLEPTCIGRFIMRRSQEQNEGD 104
            IPLKISGYVMYGFLEPTC+GRFIMRRSQE    D
Sbjct:  255 IPLKISGYVMYGFLEPTCVGRFIMRRSQEGRTSD 288
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8206.19196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNR2_ECTSI7.560e-1185.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8206contigM-pyrifera_M_contig8206:356..1416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8206.19196.1prot_M-pyrifera_M_contig8206.19196.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8206 389..1416 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.7346287-UTR-M-pyrifera_M_contig8206:355..3881622816727.7346287-UTR-M-pyrifera_M_contig8206:355..388Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8206 356..388 +
1692278143.6290343-UTR-M-pyrifera_M_contig8206:355..3881692278143.6290343-UTR-M-pyrifera_M_contig8206:355..388Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8206 356..388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.7475152-CDS-M-pyrifera_M_contig8206:388..4021622816727.7475152-CDS-M-pyrifera_M_contig8206:388..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8206 389..402 +
1692278143.6403742-CDS-M-pyrifera_M_contig8206:388..4021692278143.6403742-CDS-M-pyrifera_M_contig8206:388..402Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8206 389..402 +
1622816727.7595446-CDS-M-pyrifera_M_contig8206:1208..14161622816727.7595446-CDS-M-pyrifera_M_contig8206:1208..1416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8206 1209..1416 +
1692278143.6512904-CDS-M-pyrifera_M_contig8206:1208..14161692278143.6512904-CDS-M-pyrifera_M_contig8206:1208..1416Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8206 1209..1416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8206.19196.1

>prot_M-pyrifera_M_contig8206.19196.1 ID=prot_M-pyrifera_M_contig8206.19196.1|Name=mRNA_M-pyrifera_M_contig8206.19196.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MAFSSRLASGASSCDVARNRTRAMVRIDPHRWRKGSLLAAENTGSPLDLT
HAMRASTVGSKGHCPSSFVGQDG*
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mRNA from alignment at M-pyrifera_M_contig8206:356..1416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8206.19196.1 ID=mRNA_M-pyrifera_M_contig8206.19196.1|Name=mRNA_M-pyrifera_M_contig8206.19196.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1061bp|location=Sequence derived from alignment at M-pyrifera_M_contig8206:356..1416+ (Macrocystis pyrifera P11B4 male)
AGATTCCCCTGAAAATCAGCGGCTACGTAATGTATGGCTTTCTCGAGGTA
AGCGATAGCACGGGCTTATGCCGCCCCCCTCGCCCCGCCCCTCCCCGCCC
TCTTCAACCCCGGACGGATTCCCCTAAAAATTAGCGGGTACGTCATGTAT
GGCTTTCACGAGGTAAGCGAAGGCACGTTCTCACGCCGTAAACTCCGGTG
CTGCATACGGGCGGGAACGGCCGACGGCAGCTGCCCGTGTTCGGTTCGTT
CGTGCCCAGAGCATTGCACATTTCTAGGTGCTTCGCATTCTGACTATTAC
CGGGGTCCATAGTTAACAGGACCTATGGTATACATAAAAACCTATATATT
TACCTATTTTTACTAACAATATTTGGTCCCATTAACTATAGCCCCCGGTC
TAACAATATTTGGTCCCATTAACTATAGCCCCCCGTAATAGAAAAGGTCC
TCTGTGCTGTGTGCTTGGAGTGAGGAGGTTTTTCGAGTCGAGTGCCCATG
GTTTGGGCATGAATAGCTGAAACGTATGTGCGACTTATATCCAAGAAGGC
AGCAGGCATTTTTCAACTACGAGTACGCACGTGAAAAAAAGAGTGTTTTG
CGCACTTCGATTAAAATGTCTCGGAGGAGAGTTCGGGAGCTGCCGTTACC
GCACCGAAAGCTCTGCTCAAACTAGCCGGGCACGGTCGTTCCAGTCGCCC
CGCAACTCAGTCGAGCCACGTGCGTACGCATGTACATCATGCGTACCACC
CCTGTTCATAAGCTTTGCTCGATTTTGTTTGTGCCGCCACGCCCCCCCAC
CTAGATGCACGCTGCTCCTTGTCCTTGTCCTTTATGCGGTTTGTACCGAG
CAGCCGACTTGCATCGGGCGCTTCATCATGCGACGTAGCCAGGAACAGAA
CGAGGGCGATGGTACGGATTGATCCACATAGATGGCGCAAGGGCAGCTTG
CTGGCCGCGGAGAACACTGGGTCGCCCTTGGACCTCACGCACGCAATGCG
CGCGAGCACCGTGGGGTCTAAGGGGCACTGTCCTTCAAGTTTTGTGGGAC
AGGACGGTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8206:356..1416+

>mRNA_M-pyrifera_M_contig8206.19196.1 ID=mRNA_M-pyrifera_M_contig8206.19196.1|Name=mRNA_M-pyrifera_M_contig8206.19196.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig8206:356..1416+ (Macrocystis pyrifera P11B4 male)
ATGGCTTTCTCGAGATGGCTTTCTCGAGCCGACTTGCATCGGGCGCTTCA
TCATGCGACGTAGCCAGGAACAGAACGAGGGCGATGGTACGGATTGATCC
ACATAGATGGCGCAAGGGCAGCTTGCTGGCCGCGGAGAACACTGGGTCGC
CCTTGGACCTCACGCACGCAATGCGCGCGAGCACCGTGGGGTCTAAGGGG
CACTGTCCTTCAAGTTTTGTGGGACAGGACGGTTAGCCGACTTGCATCGG
GCGCTTCATCATGCGACGTAGCCAGGAACAGAACGAGGGCGATGGTACGG
ATTGATCCACATAGATGGCGCAAGGGCAGCTTGCTGGCCGCGGAGAACAC
TGGGTCGCCCTTGGACCTCACGCACGCAATGCGCGCGAGCACCGTGGGGT
CTAAGGGGCACTGTCCTTCAAGTTTTGTGGGACAGGACGGTTAG
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