mRNA_M-pyrifera_M_contig8204.19192.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8204.19192.1
Unique NamemRNA_M-pyrifera_M_contig8204.19192.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8204.19192.1 vs. uniprot
Match: D7G3W7_ECTSI (Vps54_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.970e-16
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   25 KDVARLAVTRQIASMVQENYAALVGGMRQVQAVDLDLARAGVQV 156
            KDVARLAVT QIASMVQENYAALVGGMRQVQAVDLDLARAGVQ+
Sbjct:   51 KDVARLAVTTQIASMVQENYAALVGGMRQVQAVDLDLARAGVQI 94
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8204.19192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3W7_ECTSI2.970e-1695.45Vps54_N domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8204contigM-pyrifera_M_contig8204:161..328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.5773711-CDS-M-pyrifera_M_contig8204:160..3281622816727.5773711-CDS-M-pyrifera_M_contig8204:160..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8204 161..328 +
1692278143.5459032-CDS-M-pyrifera_M_contig8204:160..3281692278143.5459032-CDS-M-pyrifera_M_contig8204:160..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8204 161..328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8204.19192.1prot_M-pyrifera_M_contig8204.19192.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8204 161..328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8204.19192.1

>prot_M-pyrifera_M_contig8204.19192.1 ID=prot_M-pyrifera_M_contig8204.19192.1|Name=mRNA_M-pyrifera_M_contig8204.19192.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
MLTSSFVHKDVARLAVTRQIASMVQENYAALVGGMRQVQAVDLDLARAGV
QVRRER
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mRNA from alignment at M-pyrifera_M_contig8204:161..328+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8204.19192.1 ID=mRNA_M-pyrifera_M_contig8204.19192.1|Name=mRNA_M-pyrifera_M_contig8204.19192.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=168bp|location=Sequence derived from alignment at M-pyrifera_M_contig8204:161..328+ (Macrocystis pyrifera P11B4 male)
ATGCTGACATCATCTTTCGTACATAAGGATGTGGCGCGTTTGGCGGTTAC
AAGACAGATCGCCTCCATGGTGCAGGAAAACTACGCCGCCCTGGTGGGGG
GGATGCGTCAGGTCCAGGCCGTCGACCTTGACCTGGCTAGGGCCGGCGTG
CAGGTGAGACGCGAGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8204:161..328+

>mRNA_M-pyrifera_M_contig8204.19192.1 ID=mRNA_M-pyrifera_M_contig8204.19192.1|Name=mRNA_M-pyrifera_M_contig8204.19192.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig8204:161..328+ (Macrocystis pyrifera P11B4 male)
ATGCTGACATCATCTTTCGTACATAAGGATGTGGCGCGTTTGGCGGTTAC
AAGACAGATCGCCTCCATGGTGCAGGAAAACTACGCCGCCCTGGTGGGGG
GGATGCGTCAGGTCCAGGCCGTCGACCTTGACCTGGCTAGGGCCGGCGTG
CAGGTGAGACGCGAGAGGATGCTGACATCATCTTTCGTACATAAGGATGT
GGCGCGTTTGGCGGTTACAAGACAGATCGCCTCCATGGTGCAGGAAAACT
ACGCCGCCCTGGTGGGGGGGATGCGTCAGGTCCAGGCCGTCGACCTTGAC
CTGGCTAGGGCCGGCGTGCAGGTGAGACGCGAGAGG
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