mRNA_M-pyrifera_M_contig81988.19183.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81988.19183.1
Unique NamemRNA_M-pyrifera_M_contig81988.19183.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: A0A2E7KJZ6_9PLAN (Polyphosphate kinase 2 n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJZ6_9PLAN)

HSP 1 Score: 424 bits (1089), Expect = 4.440e-149
Identity = 201/203 (99.01%), Postives = 202/203 (99.51%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGESPS 609
            HVLGA +PQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGESPS
Sbjct:   78 HVLGAMNPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGESPS 280
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: A0A518A8N7_9PLAN (Polyphosphate kinase 2 (PPK2) n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A8N7_9PLAN)

HSP 1 Score: 380 bits (976), Expect = 8.070e-132
Identity = 176/201 (87.56%), Postives = 187/201 (93.03%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGES 603
            HVLGA +PQGC V  FKVPT+EEAAHDFLWRYHR TP KG+VAIFNRSHYEDVLVVRVHNLVPQ VW QRYAHINHFEQQLADSGTHILKFYLHID +EQLARFKQRIDDPARHWKISD+DY+ERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIV+ETL AL+MKFP PTVDINEI++KYHQI   E+
Sbjct:   78 HVLGAMNPQGCTVTGFKVPTKEEAAHDFLWRYHRTTPEKGQVAIFNRSHYEDVLVVRVHNLVPQQVWEQRYAHINHFEQQLADSGTHILKFYLHIDPEEQLARFKQRIDDPARHWKISDNDYAERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVTETLEALNMKFPEPTVDINEIKQKYHQIVAEEN 278
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: A0A517RCK3_9PLAN (Polyphosphate kinase 2 (PPK2) n=2 Tax=Gimesia TaxID=1649453 RepID=A0A517RCK3_9PLAN)

HSP 1 Score: 345 bits (884), Expect = 8.730e-118
Identity = 157/200 (78.50%), Postives = 179/200 (89.50%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE 600
            HVLGA +PQGC+V  FKVP+  EAAHDFLWRYHRATP +G+VAIFNRSHYEDVLVVRVHNLVP+ VWS+RY HINHFE+ L D+ THILKFYLHIDA+EQL RFK+RIDDP RHWKISDSDY+ERPLW EYT AFEAALS+CST HAPWFIIPSNHKWFRNLAIS IV+ETL +L+M+FP PTVDINEI++KYH++ + E
Sbjct:   78 HVLGAMNPQGCRVTGFKVPSHTEAAHDFLWRYHRATPERGQVAIFNRSHYEDVLVVRVHNLVPEAVWSKRYEHINHFEKLLHDNNTHILKFYLHIDAEEQLKRFKKRIDDPKRHWKISDSDYAERPLWHEYTQAFEAALSKCSTEHAPWFIIPSNHKWFRNLAISHIVAETLESLNMQFPEPTVDINEIKQKYHEMVEEE 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: A0A3C0Q902_9GAMM (Polyphosphate kinase 2 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0Q902_9GAMM)

HSP 1 Score: 342 bits (876), Expect = 4.150e-116
Identity = 156/202 (77.23%), Postives = 177/202 (87.62%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQI--EKGE 600
            HVLGA +PQGC V  FKVP+REEAAHDFLWRYH+ATPA+G+VAIFNRSHYEDVL+ RVHN+VP+ VWS RY HIN+FE+ L D+GTHILKFYLHIDA+EQL RFK RI DPARHWKISD DY+ERP WD YT AFE A+S+CST HAPWFIIPSNHKWFRNLAIS+IVSE L A+DMKFP PTVDINEI++KYH I  E+G+
Sbjct:   78 HVLGAMNPQGCPVTGFKVPSREEAAHDFLWRYHKATPARGQVAIFNRSHYEDVLIQRVHNMVPKSVWSGRYEHINNFEKMLHDNGTHILKFYLHIDAEEQLERFKMRITDPARHWKISDGDYAERPFWDAYTEAFEEAMSKCSTSHAPWFIIPSNHKWFRNLAISKIVSEALEAMDMKFPEPTVDINEIKQKYHAIVTEEGD 279
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: A0A517X1X3_9PLAN (Polyphosphate kinase 2 (PPK2) n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1X3_9PLAN)

HSP 1 Score: 336 bits (862), Expect = 1.690e-114
Identity = 149/200 (74.50%), Postives = 178/200 (89.00%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE 600
            HVLGA +PQGC V +FKVP+++EAAHDFLWRYH+  PA+G+VAIFNRSHYEDVLVVRVH++VP++VWS+RY HIN+FE+ L D GTHILKFYLHIDA+E++ARFK+RIDDP RHWKIS+ DYSERP W++YTTAFE A+SQCST HAPWFIIP+NHKWFRNLAISRI+ ET+  L+M+FP PTVDI EIRKKYH I + E
Sbjct:   78 HVLGAMNPQGCTVTSFKVPSKDEAAHDFLWRYHKVAPAQGQVAIFNRSHYEDVLVVRVHDMVPKEVWSKRYEHINNFEKLLHDHGTHILKFYLHIDAEEEMARFKKRIDDPTRHWKISEGDYSERPFWNDYTTAFEEAMSQCSTEHAPWFIIPANHKWFRNLAISRIIVETMEGLNMEFPEPTVDIEEIRKKYHAIVEEE 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: A0A4U1AFJ2_9DELT (Polyphosphate kinase 2 family protein n=1 Tax=Desulfopila sp. IMCC35006 TaxID=2569542 RepID=A0A4U1AFJ2_9DELT)

HSP 1 Score: 336 bits (862), Expect = 2.930e-114
Identity = 152/200 (76.00%), Postives = 173/200 (86.50%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE 600
            HVL   +PQGC V  FKVP+REEAAHDFLWRYH+ATP +G+VAIFNRSHYEDVLV RVHN+VP+D+WS+RY HIN FE+ L ++GTHILKFYLHID +EQL RFKQRIDDP RHWKISD DY+ERP WD YT AFE ALS+CST HAPWFIIP+NHKWFRNLAISRIV++TL +LDMKFP PTVDI EI+KKYH+I   E
Sbjct:   78 HVLTGMNPQGCTVTGFKVPSREEAAHDFLWRYHKATPGRGQVAIFNRSHYEDVLVQRVHNMVPKDIWSRRYEHINDFERMLYENGTHILKFYLHIDPEEQLKRFKQRIDDPTRHWKISDGDYAERPYWDAYTEAFEDALSKCSTRHAPWFIIPANHKWFRNLAISRIVADTLDSLDMKFPEPTVDIAEIKKKYHEIVVAE 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: V4LDM2_9GAMM (Uncharacterized protein n=1 Tax=Thiohalocapsa sp. PB-PSB1 TaxID=1385625 RepID=V4LDM2_9GAMM)

HSP 1 Score: 334 bits (857), Expect = 1.630e-113
Identity = 152/200 (76.00%), Postives = 174/200 (87.00%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE 600
            HVLGA +PQGC V  FKVP++EEAAHDFLWRYH+ TP KG+VAIFNRSHYEDVLV RVH++VP+ VW+ RY HIN+FE+ L D+GTHILKFYLHIDADE+L RFK RI DPARHWKISD DY+ERP WD YT AFE ALS+CST HAPWF+IPSNHKWFRNLAISRIV+ETL +LDM+FPAPTVDI+EI+ KYH I + E
Sbjct:   78 HVLGAMNPQGCNVTGFKVPSKEEAAHDFLWRYHKHTPGKGQVAIFNRSHYEDVLVQRVHDMVPKKVWTGRYEHINNFEKLLYDNGTHILKFYLHIDADEELERFKIRIQDPARHWKISDGDYAERPFWDAYTEAFEDALSKCSTEHAPWFVIPSNHKWFRNLAISRIVAETLESLDMQFPAPTVDIDEIKMKYHAIVEAE 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: V4J6G6_9GAMM (Uncharacterized protein n=2 Tax=Chromatiaceae TaxID=1046 RepID=V4J6G6_9GAMM)

HSP 1 Score: 334 bits (856), Expect = 1.820e-113
Identity = 154/200 (77.00%), Postives = 175/200 (87.50%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE 600
            HVLGA +PQGC V  FKVP++EEAAHDFLWRYH+ TPAKG+VAIFNRSHYEDVLVVRVH+LVP+ VWS+RYA IN FE+ L D+GTHILKFYLHID  EQLARF+QRIDDPARHWKISD DY+ERP WD YT AFE ALS+ ST HAPWF+IPSNHKWFRNLAISRIV+ETL +L MKFP PTVDI++I++KYH I + E
Sbjct:   78 HVLGAMNPQGCAVTGFKVPSKEEAAHDFLWRYHQHTPAKGQVAIFNRSHYEDVLVVRVHDLVPKAVWSRRYAQINDFEKTLVDNGTHILKFYLHIDPHEQLARFRQRIDDPARHWKISDGDYAERPFWDAYTEAFEDALSKTSTEHAPWFVIPSNHKWFRNLAISRIVAETLESLGMKFPEPTVDIDQIKQKYHAIVEQE 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: A0A6P1DWG8_9GAMM (Polyphosphate kinase 2 family protein n=1 Tax=Thiorhodococcus mannitoliphagus TaxID=329406 RepID=A0A6P1DWG8_9GAMM)

HSP 1 Score: 333 bits (854), Expect = 4.210e-113
Identity = 152/200 (76.00%), Postives = 174/200 (87.00%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE 600
            HVLGA +PQGC+V  FKVP+ EEA HDFLWRYH+A PA+G+VAIFNRSHYEDVLVVRVH+LV + VWS+RYA IN FE+ L ++GTHILKFYLHID +EQLARFKQR+DDPARHWKISD DY+ERP WDEYT AFE ALSQCST  APWFIIP+NHKWFRNLAI+RIV+ETL +LDM+FP P+VDI EIRKKYH +   E
Sbjct:   78 HVLGAMNPQGCRVTGFKVPSAEEAGHDFLWRYHKAAPARGQVAIFNRSHYEDVLVVRVHDLVSKTVWSKRYAQINAFERMLHENGTHILKFYLHIDPEEQLARFKQRLDDPARHWKISDGDYAERPYWDEYTAAFEDALSQCSTDQAPWFIIPANHKWFRNLAIARIVAETLESLDMRFPEPSVDIAEIRKKYHALVDAE 277
[Close]
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Match: UPI001EF6FA3C (polyphosphate kinase 2 family protein n=1 Tax=Ruegeria sp. Ofav3-42 TaxID=2917759 RepID=UPI001EF6FA3C)

HSP 1 Score: 332 bits (850), Expect = 1.130e-112
Identity = 148/200 (74.00%), Postives = 174/200 (87.00%), Query Frame = 1 
Query:    1 HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHYEDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQLARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWFIIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE 600
            HVL A +PQGCKV+ FKVPT EEAAHDFLWR H+ TP KG+V+IFNRSHYEDVLVVRVHNLVP+++W +RY HIN FE  L DS TH+LKFYLHI  +E+L+RFK+RIDDPARHWKIS+ DY+ERP WDEYT AFEAALS+CST HAPWF+IP+NHKWFRNLA+SRIV+E L +LDM+FP PTVDI++IRKKYH  EK +
Sbjct:   78 HVLAAMNPQGCKVSGFKVPTPEEAAHDFLWRCHKETPQKGQVSIFNRSHYEDVLVVRVHNLVPKEIWKKRYDHINAFEALLHDSDTHVLKFYLHISPEEELSRFKERIDDPARHWKISEGDYAERPFWDEYTKAFEAALSKCSTEHAPWFVIPANHKWFRNLAVSRIVAEYLESLDMQFPPPTVDIDDIRKKYHAAEKSQ 277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81988.19183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KJZ6_9PLAN4.440e-14999.01Polyphosphate kinase 2 n=3 Tax=Gimesia TaxID=16494... [more]
A0A518A8N7_9PLAN8.070e-13287.56Polyphosphate kinase 2 (PPK2) n=3 Tax=Gimesia pana... [more]
A0A517RCK3_9PLAN8.730e-11878.50Polyphosphate kinase 2 (PPK2) n=2 Tax=Gimesia TaxI... [more]
A0A3C0Q902_9GAMM4.150e-11677.23Polyphosphate kinase 2 n=1 Tax=Gammaproteobacteria... [more]
A0A517X1X3_9PLAN1.690e-11474.50Polyphosphate kinase 2 (PPK2) n=1 Tax=Gimesia aqua... [more]
A0A4U1AFJ2_9DELT2.930e-11476.00Polyphosphate kinase 2 family protein n=1 Tax=Desu... [more]
V4LDM2_9GAMM1.630e-11376.00Uncharacterized protein n=1 Tax=Thiohalocapsa sp. ... [more]
V4J6G6_9GAMM1.820e-11377.00Uncharacterized protein n=2 Tax=Chromatiaceae TaxI... [more]
A0A6P1DWG8_9GAMM4.210e-11376.00Polyphosphate kinase 2 family protein n=1 Tax=Thio... [more]
UPI001EF6FA3C1.130e-11274.00polyphosphate kinase 2 family protein n=1 Tax=Rueg... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81988contigM-pyrifera_M_contig81988:309..920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score331.6
Seed ortholog evalue2.5e-88
Seed eggNOG ortholog857087.Metme_1660
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Polyphosphate kinase 2
EggNOG OGs1MVE2@1224,1RM9U@1236,1XE6M@135618,COG2326@1,COG2326@2
COG Functional cat.S
Best tax levelMethylococcales
Best eggNOG OGNA|NA|NA
Exons1
Model size612
Cds size612
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.1517103-CDS-M-pyrifera_M_contig81988:308..9201622816727.1517103-CDS-M-pyrifera_M_contig81988:308..920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81988 309..920 -
1692278143.3366108-CDS-M-pyrifera_M_contig81988:308..9201692278143.3366108-CDS-M-pyrifera_M_contig81988:308..920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81988 309..920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81988.19183.1prot_M-pyrifera_M_contig81988.19183.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81988 309..920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81988.19183.1

>prot_M-pyrifera_M_contig81988.19183.1 ID=prot_M-pyrifera_M_contig81988.19183.1|Name=mRNA_M-pyrifera_M_contig81988.19183.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp
HVLGARSPQGCKVAAFKVPTREEAAHDFLWRYHRATPAKGEVAIFNRSHY
EDVLVVRVHNLVPQDVWSQRYAHINHFEQQLADSGTHILKFYLHIDADEQ
LARFKQRIDDPARHWKISDSDYSERPLWDEYTTAFEAALSQCSTPHAPWF
IIPSNHKWFRNLAISRIVSETLSALDMKFPAPTVDINEIRKKYHQIEKGE
SPS*
back to top

mRNA from alignment at M-pyrifera_M_contig81988:309..920-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81988.19183.1 ID=mRNA_M-pyrifera_M_contig81988.19183.1|Name=mRNA_M-pyrifera_M_contig81988.19183.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig81988:309..920- (Macrocystis pyrifera P11B4 male)
CACGTGCTGGGGGCCAGGAGCCCGCAGGGCTGCAAGGTCGCCGCCTTCAA
AGTTCCCACCAGGGAAGAAGCCGCCCACGATTTCCTCTGGCGTTACCATC
GGGCCACACCCGCGAAAGGGGAAGTGGCGATCTTCAACCGCTCGCATTAT
GAAGATGTGCTGGTCGTCCGCGTACACAACCTGGTGCCTCAGGATGTCTG
GTCGCAACGTTACGCGCACATCAACCACTTCGAGCAACAGCTGGCTGACA
GCGGGACACACATCCTCAAGTTCTACCTGCACATCGATGCGGACGAACAA
CTGGCCCGCTTCAAGCAGCGAATCGACGATCCCGCCCGCCACTGGAAAAT
CAGCGACAGCGATTATTCAGAGCGTCCCCTGTGGGACGAATACACGACAG
CCTTCGAAGCCGCCCTCAGCCAGTGCAGCACACCCCACGCTCCCTGGTTC
ATCATTCCCTCCAATCACAAATGGTTCCGCAACCTGGCGATCTCCCGCAT
CGTATCCGAAACCCTGTCAGCGCTGGACATGAAGTTCCCGGCCCCCACGG
TCGACATCAACGAGATTCGCAAGAAGTACCATCAGATTGAAAAGGGGGAA
TCTCCCTCGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81988:309..920-

>mRNA_M-pyrifera_M_contig81988.19183.1 ID=mRNA_M-pyrifera_M_contig81988.19183.1|Name=mRNA_M-pyrifera_M_contig81988.19183.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig81988:309..920- (Macrocystis pyrifera P11B4 male)
CACGTGCTGGGGGCCAGGAGCCCGCAGGGCTGCAAGGTCGCCGCCTTCAA
AGTTCCCACCAGGGAAGAAGCCGCCCACGATTTCCTCTGGCGTTACCATC
GGGCCACACCCGCGAAAGGGGAAGTGGCGATCTTCAACCGCTCGCATTAT
GAAGATGTGCTGGTCGTCCGCGTACACAACCTGGTGCCTCAGGATGTCTG
GTCGCAACGTTACGCGCACATCAACCACTTCGAGCAACAGCTGGCTGACA
GCGGGACACACATCCTCAAGTTCTACCTGCACATCGATGCGGACGAACAA
CTGGCCCGCTTCAAGCAGCGAATCGACGATCCCGCCCGCCACTGGAAAAT
CAGCGACAGCGATTATTCAGAGCGTCCCCTGTGGGACGAATACACGACAG
CCTTCGAAGCCGCCCTCAGCCAGTGCAGCACACCCCACGCTCCCTGGTTC
ATCATTCCCTCCAATCACAAATGGTTCCGCAACCTGGCGATCTCCCGCAT
CGTATCCGAAACCCTGTCAGCGCTGGACATGAAGTTCCCGGCCCCCACGG
TCGACATCAACGAGATTCGCAAGAAGTACCATCAGATTGAAAAGGGGGAA
TCTCCCTCGTGACACGTGCTGGGGGCCAGGAGCCCGCAGGGCTGCAAGGT
CGCCGCCTTCAAAGTTCCCACCAGGGAAGAAGCCGCCCACGATTTCCTCT
GGCGTTACCATCGGGCCACACCCGCGAAAGGGGAAGTGGCGATCTTCAAC
CGCTCGCATTATGAAGATGTGCTGGTCGTCCGCGTACACAACCTGGTGCC
TCAGGATGTCTGGTCGCAACGTTACGCGCACATCAACCACTTCGAGCAAC
AGCTGGCTGACAGCGGGACACACATCCTCAAGTTCTACCTGCACATCGAT
GCGGACGAACAACTGGCCCGCTTCAAGCAGCGAATCGACGATCCCGCCCG
CCACTGGAAAATCAGCGACAGCGATTATTCAGAGCGTCCCCTGTGGGACG
AATACACGACAGCCTTCGAAGCCGCCCTCAGCCAGTGCAGCACACCCCAC
GCTCCCTGGTTCATCATTCCCTCCAATCACAAATGGTTCCGCAACCTGGC
GATCTCCCGCATCGTATCCGAAACCCTGTCAGCGCTGGACATGAAGTTCC
CGGCCCCCACGGTCGACATCAACGAGATTCGCAAGAAGTACCATCAGATT
GAAAAGGGGGAATCTCCCTCGTGA
back to top