mRNA_M-pyrifera_M_contig81983.19180.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81983.19180.1
Unique NamemRNA_M-pyrifera_M_contig81983.19180.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A1S8WA25_9FUNG (C2 domain-containing protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8WA25_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 4.450e-19
Identity = 45/131 (34.35%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 RNRAPFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRVRR 393
            R+ +PFP + L  C  C   +VPE+++TT+EPP  LE +G G+ ++++  R  + R++ E+   ++S  + FAQ + H +L+ ++R  G NA+F +++ ++  +  +   A GTA  +RSLPTP  ++V R
Sbjct:  591 RSESPFP-MALTRCGICKRKYVPEVLLTTIEPPPELEMIGKGIFIEALVCRQKKPRVS-ESRAVSVSESIPFAQYDLHRQLMYKLRMYGLNAIFGLKIQISMGENLMTAVAIGTAVYVRSLPTPPSLKVFR 719          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: W2RGS0_PHYPN (C2 domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RGS0_PHYPN)

HSP 1 Score: 90.9 bits (224), Expect = 1.090e-18
Identity = 42/131 (32.06%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 RNRAPFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRVRR 393
            R+ APF N+R++ C  CG  WVPE+++ ++EPP GL  +G G  +Q+   R    +  G+     +S  L F + E + +L+++M+ +G NA+FA    +      ++   +GT   L +LP P  +R+ R
Sbjct:  495 RSLAPFSNMRMVRCGVCGNKWVPEMMIASIEPPAGLAMMGKGTFIQARVCR-QRRKGTGDVNATIVSDALPFLEYELYRQLIVKMKVLGVNAVFAFDSQIQVGGSLIVGVITGTGLYLPALPPPPTLRIER 624          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A1Y2GCN9_9FUNG (C2 domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GCN9_9FUNG)

HSP 1 Score: 90.1 bits (222), Expect = 2.080e-18
Identity = 45/131 (34.35%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    1 RNRAPFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRVRR 393
            R  +PFP + L+ C  C   +VPE++++T+EPP  L  VG    V++   R  ++R  GE+    +S  + F + + H +L+ +++  G NA+F +R  L   D  ++  ASGTA  L +LPTP  +R+ R
Sbjct:  502 RKSSPFP-MSLVKCQKCKKKYVPEILLSTVEPPAELGVVGQSAFVEAHVCRA-KKRKDGESNATIVSDAIPFVEYDLHRQLMYKLKIHGLNAIFGLRFQLTIGDSLIVAVASGTAMYLSALPTPPALRISR 630          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A7S2W4C5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W4C5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.120e-18
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   10 APFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARC---VEERI-AGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRVRR 393
            APF N+RL+ C  C   WVP+++++T++PP  L   GSGVL+++ A R    V  +  + EA    +S +L F +IE H++L+L+++ +G NA FAVR  +      V    + TA    +LP PA +R+ R
Sbjct:  591 APFANMRLVPCGLCRKKWVPDVLLSTIDPPSTLPVTGSGVLIEARACRSRPKVNSKADSREADASVVSEILVFLEIEMHKQLMLKLKILGMNAAFAVRSQVHIGSCLVAGVTTATAIHTPALPPPAILRIHR 722          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A197KH82_9FUNG (C2 domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KH82_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 9.870e-18
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 RNRAPFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRVRR 393
            R  +PFP + L+ C  C   +VPE++++T+EPP  L  VG    V++   R  ++R  GE+    +S  + F + + H +L+ +++  G NA+F +R  L   D  ++  A GTA  L +LPTP  +R+ R
Sbjct:  509 RKSSPFP-MSLIKCQKCKKKYVPEILLSTVEPPAELGVVGQSAFVEAHVCRA-KKRKDGESNATIVSDAIPFVEYDLHRQLMYKLKIHGLNAIFGLRFQLTVGDSLIVAVACGTAMYLSALPTPPALRISR 637          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A4P9WHQ6_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WHQ6_9FUNG)

HSP 1 Score: 87.4 bits (215), Expect = 1.680e-17
Identity = 41/118 (34.75%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   40 CPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRVRR 393
            C  C   +VPE+++TT+EPP  LE +G+G L+++   R  + R+ GE+    +S  + FAQ + H +L+ ++R  G NA+F +R+     +  +   A+GTA  +++LP+P P++V R
Sbjct:    6 CGVCRKKYVPEILLTTIEPPPELETIGAGTLLEAHVCRHKKSRV-GESRASIVSESIPFAQYDIHRQLIYKLRIYGLNAVFGLRIQFTVGESLMTAVATGTAVYVKALPSPPPLKVFR 122          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A1S3JK63_LINUN (C2 domain-containing protein 5 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JK63_LINUN)

HSP 1 Score: 86.7 bits (213), Expect = 3.390e-17
Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 1
Query:   10 APFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRV 387
            APFP V L  C  C  G VP+++ TT+EPP+ L  VG G LVQ+   R  +E  AGE+  + +S  L F + E H +L+ +++  G NALF +++ +   +  +I  A+ TA  + +LP+P   RV
Sbjct:  656 APFP-VSLSRCTICKRGKVPDVLFTTVEPPVELVTVGKGCLVQARICRPKKEAKAGESNAKEVSDNLPFMEYELHSQLMNKLKVKGMNALFGLKIQVEVGETMLIAVATATAAYIAALPSPPVPRV 780          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A2P6NJ33_9EUKA (C2 domain-containing protein n=2 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJ33_9EUKA)

HSP 1 Score: 85.9 bits (211), Expect = 6.200e-17
Identity = 39/131 (29.77%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    1 RNRAPFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRVRR 393
            ++R P  N++L  C  C   +VP++++T++EPP G+   G G L+++   R  +++  GE     +S  L F +   H +L+ ++R MG NA F +++ +A  +  ++  A+ TAF + +LP+P  +++ R
Sbjct:  432 KHRKPPYNMKLTLCNICKKKYVPQVLITSIEPPNGISVTGKGCLLEARICR-EKKKFQGEMNAIAVSEGLPFMEYNLHRQLMYKLRIMGMNAAFRLKMQIAIGESLIVAIATATAFFIPALPSPRTLQINR 561          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A1Y2HDH9_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HDH9_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 1.130e-16
Identity = 47/130 (36.15%), Postives = 77/130 (59.23%), Query Frame = 1
Query:   13 PFP------NVRLLTCPSCGLGWVPELVVTTLEPPLGLEA-VGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPI 381
            P+P      +  L TC +CG   VP LV+ T++PPL L A VG GVL+++   R  +++  GE     +S  + FA+ + H +L  ++RA+G NA+F +++ L   D+ ++  A+GTAF L  +P P P+
Sbjct:  184 PYPARSTTLHAALATCAACGRRPVPPLVLATVDPPLDLPASVGPGVLIEAHVLRPKKKKD-GETNAALVSDAIPFAEFDLHRQLTGKLRAVGGNAVFGLKVQLVLGDEHLVAVATGTAFRLPWIPGPEPV 312          
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Match: A0A6P4Y5K3_BRABE (C2 domain-containing protein 5-like isoform X6 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y5K3_BRABE)

HSP 1 Score: 84.7 bits (208), Expect = 1.580e-16
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 RNRAPFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAARCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGLAFRDKQVIVTASGTAFLLRSLPTPAPIRV 387
            R   PFP V L  C  C  G VP+++ TT+EPP+ L   G G L+Q+   R  + ++ GEA    +S VL F + E H +L+ +++A   N+LF + + ++  +  +I  A+ TA  L +LP P P+++
Sbjct:  523 RLNTPFPIV-LENCAVCRHGKVPDVLFTTIEPPVDLPVTGHGCLIQARVCRG-KRKLQGEANAAAVSDVLPFMEYELHRQLMHKLKAKSMNSLFGLNVEISVGETLIIGIATATAAFLSALPVPGPLKI 649          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81983.19180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S8WA25_9FUNG4.450e-1934.35C2 domain-containing protein n=3 Tax=Batrachochytr... [more]
W2RGS0_PHYPN1.090e-1832.06C2 domain-containing protein n=8 Tax=Phytophthora ... [more]
A0A1Y2GCN9_9FUNG2.080e-1834.35C2 domain-containing protein n=1 Tax=Lobosporangiu... [more]
A0A7S2W4C5_9STRA2.120e-1837.12Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A197KH82_9FUNG9.870e-1833.59C2 domain-containing protein n=1 Tax=Linnemannia e... [more]
A0A4P9WHQ6_9FUNG1.680e-1734.75Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A1S3JK63_LINUN3.390e-1738.10C2 domain-containing protein 5 n=1 Tax=Lingula ung... [more]
A0A2P6NJ33_9EUKA6.200e-1729.77C2 domain-containing protein n=2 Tax=Planoprotoste... [more]
A0A1Y2HDH9_9FUNG1.130e-1636.15Uncharacterized protein (Fragment) n=1 Tax=Catenar... [more]
A0A6P4Y5K3_BRABE1.580e-1634.88C2 domain-containing protein 5-like isoform X6 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81983contigM-pyrifera_M_contig81983:3..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score97.1
Seed ortholog evalue6.7e-18
Seed eggNOG ortholog109871.XP_006675368.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Allomyces macrogynus ATCC 38327
EggNOG OGs38CQ4@33154,3NWD6@4751,KOG1031@1,KOG1031@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.043928-CDS-M-pyrifera_M_contig81983:2..3951622816727.043928-CDS-M-pyrifera_M_contig81983:2..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81983 3..395 +
1692278143.3004365-CDS-M-pyrifera_M_contig81983:2..3951692278143.3004365-CDS-M-pyrifera_M_contig81983:2..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81983 3..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81983.19180.1prot_M-pyrifera_M_contig81983.19180.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81983 3..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81983.19180.1

>prot_M-pyrifera_M_contig81983.19180.1 ID=prot_M-pyrifera_M_contig81983.19180.1|Name=mRNA_M-pyrifera_M_contig81983.19180.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
RNRAPFPNVRLLTCPSCGLGWVPELVVTTLEPPLGLEAVGSGVLVQSVAA
RCVEERIAGEAGCETISRVLSFAQIEAHERLVLRMRAMGCNALFAVRLGL
AFRDKQVIVTASGTAFLLRSLPTPAPIRVRR
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mRNA from alignment at M-pyrifera_M_contig81983:3..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81983.19180.1 ID=mRNA_M-pyrifera_M_contig81983.19180.1|Name=mRNA_M-pyrifera_M_contig81983.19180.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig81983:3..395+ (Macrocystis pyrifera P11B4 male)
CGGAACCGGGCTCCGTTTCCGAACGTGCGTCTGCTGACGTGTCCCAGCTG CGGGCTGGGGTGGGTGCCGGAGCTGGTGGTGACCACGCTGGAGCCTCCTC TGGGCCTGGAGGCCGTGGGCAGCGGGGTGCTGGTGCAGTCGGTGGCTGCC CGTTGCGTGGAGGAGCGGATCGCTGGGGAGGCCGGCTGTGAGACCATCTC CAGAGTGCTGAGCTTTGCGCAGATTGAAGCACACGAGCGGCTCGTGCTGC GGATGCGAGCCATGGGCTGCAATGCGCTCTTCGCTGTGCGACTCGGTCTC GCCTTTCGCGACAAGCAAGTCATCGTCACAGCCTCAGGCACAGCCTTCCT CCTCCGCTCCCTCCCAACCCCTGCTCCCATCCGAGTGAGGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81983:3..395+

>mRNA_M-pyrifera_M_contig81983.19180.1 ID=mRNA_M-pyrifera_M_contig81983.19180.1|Name=mRNA_M-pyrifera_M_contig81983.19180.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig81983:3..395+ (Macrocystis pyrifera P11B4 male)
CGGAACCGGGCTCCGTTTCCGAACGTGCGTCTGCTGACGTGTCCCAGCTG
CGGGCTGGGGTGGGTGCCGGAGCTGGTGGTGACCACGCTGGAGCCTCCTC
TGGGCCTGGAGGCCGTGGGCAGCGGGGTGCTGGTGCAGTCGGTGGCTGCC
CGTTGCGTGGAGGAGCGGATCGCTGGGGAGGCCGGCTGTGAGACCATCTC
CAGAGTGCTGAGCTTTGCGCAGATTGAAGCACACGAGCGGCTCGTGCTGC
GGATGCGAGCCATGGGCTGCAATGCGCTCTTCGCTGTGCGACTCGGTCTC
GCCTTTCGCGACAAGCAAGTCATCGTCACAGCCTCAGGCACAGCCTTCCT
CCTCCGCTCCCTCCCAACCCCTGCTCCCATCCGAGTGAGGAGGCGGAACC
GGGCTCCGTTTCCGAACGTGCGTCTGCTGACGTGTCCCAGCTGCGGGCTG
GGGTGGGTGCCGGAGCTGGTGGTGACCACGCTGGAGCCTCCTCTGGGCCT
GGAGGCCGTGGGCAGCGGGGTGCTGGTGCAGTCGGTGGCTGCCCGTTGCG
TGGAGGAGCGGATCGCTGGGGAGGCCGGCTGTGAGACCATCTCCAGAGTG
CTGAGCTTTGCGCAGATTGAAGCACACGAGCGGCTCGTGCTGCGGATGCG
AGCCATGGGCTGCAATGCGCTCTTCGCTGTGCGACTCGGTCTCGCCTTTC
GCGACAAGCAAGTCATCGTCACAGCCTCAGGCACAGCCTTCCTCCTCCGC
TCCCTCCCAACCCCTGCTCCCATCCGAGTGAGGAGG
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