mRNA_M-pyrifera_M_contig81982.19179.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81982.19179.1
Unique NamemRNA_M-pyrifera_M_contig81982.19179.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81982.19179.1 vs. uniprot
Match: A0A4V1IUL3_9FUNG (RING-type domain-containing protein n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4V1IUL3_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 3.640e-8
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   10 CAICLHTPERPTFTQPCFHGPFCFKHIDRWIGVSRSCPMCKR 135
            CAICL +PE PTF  PC+H  FC+  IDRW  V+  CP+CK+
Sbjct:   97 CAICLASPEDPTFLSPCYHA-FCWACIDRWSRVAAVCPLCKQ 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81982.19179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4V1IUL3_9FUNG3.640e-857.14RING-type domain-containing protein n=1 Tax=Cauloc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81982contigM-pyrifera_M_contig81982:102..398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-19_002130.4
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.0094252-CDS-M-pyrifera_M_contig81982:101..3981622816727.0094252-CDS-M-pyrifera_M_contig81982:101..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81982 102..398 -
1692278143.2897186-CDS-M-pyrifera_M_contig81982:101..3981692278143.2897186-CDS-M-pyrifera_M_contig81982:101..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81982 102..398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81982.19179.1prot_M-pyrifera_M_contig81982.19179.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81982 102..398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81982.19179.1

>prot_M-pyrifera_M_contig81982.19179.1 ID=prot_M-pyrifera_M_contig81982.19179.1|Name=mRNA_M-pyrifera_M_contig81982.19179.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
ETVCAICLHTPERPTFTQPCFHGPFCFKHIDRWIGVSRSCPMCKREIHAV
LFDQTSQYDYTQAAVITMPKGEEGGEVEAGFVSTKHFRVTCLFPGRRRL
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mRNA from alignment at M-pyrifera_M_contig81982:102..398-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81982.19179.1 ID=mRNA_M-pyrifera_M_contig81982.19179.1|Name=mRNA_M-pyrifera_M_contig81982.19179.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig81982:102..398- (Macrocystis pyrifera P11B4 male)
GAAACCGTGTGTGCAATTTGCCTACACACTCCGGAGAGGCCCACTTTTAC
ACAACCATGCTTTCATGGACCCTTTTGCTTCAAGCACATTGACCGTTGGA
TCGGCGTGAGCAGATCTTGCCCAATGTGCAAACGGGAAATTCACGCTGTG
CTCTTTGACCAAACCTCTCAATACGACTACACGCAGGCAGCAGTTATTAC
AATGCCGAAAGGGGAAGAGGGTGGTGAGGTGGAAGCTGGGTTTGTGAGTA
CCAAGCACTTTCGTGTTACCTGCTTGTTTCCTGGTCGAAGGAGGTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81982:102..398-

>mRNA_M-pyrifera_M_contig81982.19179.1 ID=mRNA_M-pyrifera_M_contig81982.19179.1|Name=mRNA_M-pyrifera_M_contig81982.19179.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig81982:102..398- (Macrocystis pyrifera P11B4 male)
GAAACCGTGTGTGCAATTTGCCTACACACTCCGGAGAGGCCCACTTTTAC
ACAACCATGCTTTCATGGACCCTTTTGCTTCAAGCACATTGACCGTTGGA
TCGGCGTGAGCAGATCTTGCCCAATGTGCAAACGGGAAATTCACGCTGTG
CTCTTTGACCAAACCTCTCAATACGACTACACGCAGGCAGCAGTTATTAC
AATGCCGAAAGGGGAAGAGGGTGGTGAGGTGGAAGCTGGGTTTGTGAGTA
CCAAGCACTTTCGTGTTACCTGCTTGTTTCCTGGTCGAAGGAGGTTAGAA
ACCGTGTGTGCAATTTGCCTACACACTCCGGAGAGGCCCACTTTTACACA
ACCATGCTTTCATGGACCCTTTTGCTTCAAGCACATTGACCGTTGGATCG
GCGTGAGCAGATCTTGCCCAATGTGCAAACGGGAAATTCACGCTGTGCTC
TTTGACCAAACCTCTCAATACGACTACACGCAGGCAGCAGTTATTACAAT
GCCGAAAGGGGAAGAGGGTGGTGAGGTGGAAGCTGGGTTTGTGAGTACCA
AGCACTTTCGTGTTACCTGCTTGTTTCCTGGTCGAAGGAGGTTA
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