mRNA_M-pyrifera_M_contig81980.19178.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81980.19178.1
Unique NamemRNA_M-pyrifera_M_contig81980.19178.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A0G4I0L0_9ALVE (RING-CH-type domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I0L0_9ALVE)

HSP 1 Score: 55.8 bits (133), Expect = 1.670e-7
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:   13 CRICDGGEEEGELLHPCNCRAS---IHAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 186
            CRIC  G+E GEL+HPC C  S   +H  CL++W S+         + D +  CEVC  +Y
Sbjct:  152 CRICQDGQEGGELIHPCKCMGSMKYVHRECLDQWRSVTTL------NPDNMVRCEVCHHKY 206
[Close]
BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A7J7BMG9_9COLE (RING-CH-type domain-containing protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7BMG9_9COLE)

HSP 1 Score: 53.5 bits (127), Expect = 1.110e-6
Identity = 27/61 (44.26%), Postives = 32/61 (52.46%), Query Frame = 1 
Query:   13 CRICDGGEEEGELLHPCNCRASI---HAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 186
            CRIC GGE  G+LL PC CR SI   H  CLE+W+      E    H      CE+C+  Y
Sbjct:  405 CRICHGGESNGDLLSPCQCRGSIALTHMECLERWLK-----ESATSH------CELCRYHY 454
[Close]
BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A7S1RX41_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RX41_ALECA)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-6
Identity = 25/65 (38.46%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:    1 MATHCRICDGGEEEGELLHPCNCRAS---IHAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 186
            +   CRIC GG+++GEL+ PC C  S   +H  C  +WI       RDG       VC VC++ Y
Sbjct:   41 VVEECRICGGGDKDGELIRPCGCAGSMAFVHRHCAAEWI------RRDGSP-----VCPVCRKAY 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Match: A0A7S4QG80_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QG80_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 2.090e-6
Identity = 25/65 (38.46%), Postives = 33/65 (50.77%), Query Frame = 1 
Query:    1 MATHCRICDGGEEEGELLHPCNCRAS---IHAACLEKWISIRPFPERDGGHIDPLYVCEVCQEEY 186
            +   CRIC GGE +GEL+ PC C  S   +H  C  +WI       RDG  I     C +C++ Y
Sbjct:  370 VVAECRICGGGEADGELIRPCGCAGSMAFVHRQCAAEWI------RRDGSPI-----CPICRKPY 423
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81980.19178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0G4I0L0_9ALVE1.670e-740.98RING-CH-type domain-containing protein n=1 Tax=Chr... [more]
A0A7J7BMG9_9COLE1.110e-644.26RING-CH-type domain-containing protein n=1 Tax=Abs... [more]
A0A7S1RX41_ALECA1.750e-638.46Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S4QG80_9DINO2.090e-638.46Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81980contigM-pyrifera_M_contig81980:337..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.9753757-CDS-M-pyrifera_M_contig81980:336..5281622816726.9753757-CDS-M-pyrifera_M_contig81980:336..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81980 337..528 +
1692278143.2796707-CDS-M-pyrifera_M_contig81980:336..5281692278143.2796707-CDS-M-pyrifera_M_contig81980:336..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81980 337..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81980.19178.1prot_M-pyrifera_M_contig81980.19178.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81980 337..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81980.19178.1

>prot_M-pyrifera_M_contig81980.19178.1 ID=prot_M-pyrifera_M_contig81980.19178.1|Name=mRNA_M-pyrifera_M_contig81980.19178.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MATHCRICDGGEEEGELLHPCNCRASIHAACLEKWISIRPFPERDGGHID
PLYVCEVCQEEYRV
back to top

mRNA from alignment at M-pyrifera_M_contig81980:337..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81980.19178.1 ID=mRNA_M-pyrifera_M_contig81980.19178.1|Name=mRNA_M-pyrifera_M_contig81980.19178.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig81980:337..528+ (Macrocystis pyrifera P11B4 male)
ATGGCTACCCATTGTCGCATTTGTGACGGTGGTGAGGAGGAGGGAGAGTT
GTTACATCCATGCAATTGCCGCGCGAGCATCCACGCCGCGTGTTTGGAGA
AATGGATATCCATACGACCCTTTCCGGAGAGAGATGGGGGACATATTGAC
CCTCTCTATGTATGTGAAGTTTGTCAAGAGGAGTATCGTGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81980:337..528+

>mRNA_M-pyrifera_M_contig81980.19178.1 ID=mRNA_M-pyrifera_M_contig81980.19178.1|Name=mRNA_M-pyrifera_M_contig81980.19178.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig81980:337..528+ (Macrocystis pyrifera P11B4 male)
ATGGCTACCCATTGTCGCATTTGTGACGGTGGTGAGGAGGAGGGAGAGTT
GTTACATCCATGCAATTGCCGCGCGAGCATCCACGCCGCGTGTTTGGAGA
AATGGATATCCATACGACCCTTTCCGGAGAGAGATGGGGGACATATTGAC
CCTCTCTATGTATGTGAAGTTTGTCAAGAGGAGTATCGTGTGATGGCTAC
CCATTGTCGCATTTGTGACGGTGGTGAGGAGGAGGGAGAGTTGTTACATC
CATGCAATTGCCGCGCGAGCATCCACGCCGCGTGTTTGGAGAAATGGATA
TCCATACGACCCTTTCCGGAGAGAGATGGGGGACATATTGACCCTCTCTA
TGTATGTGAAGTTTGTCAAGAGGAGTATCGTGTG
back to top