mRNA_M-pyrifera_M_contig81959.19176.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81959.19176.1
Unique NamemRNA_M-pyrifera_M_contig81959.19176.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig81959.19176.1 vs. uniprot
Match: A0A6H5KA25_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA25_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.120e-24
Identity = 83/153 (54.25%), Postives = 93/153 (60.78%), Query Frame = 1 
Query:   25 VGESSAPR-RYVLMGHSMGCITAATVSLDPSLPPEQTTLVVVSPALSLPSS-KRMKRNARFAAPAGVPGAPPPSEXXXXXXNARVPTSGXXXXXXXXXRLARGFREGVLPRGGAGAIVGAPVCAVRAVRDVGAWVFNWCLLPALYPFEILGLR 477
            +GES+A   R VLMGHSMGCITAAT +LDPSLPP  TTLV+V+PALSLP      +R A                XXXXXX        XXXXXXXXX        G   RG  GA+VGAP  A +AV   G W+FNWCLLP +YP EILGLR
Sbjct:  279 LGESTASEGRCVLMGHSMGCITAATTALDPSLPPHHTTLVLVAPALSLPRKITAEQRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTDAGSSARGRVGAVVGAPASAAQAVLHAGVWLFNWCLLPMIYPLEILGLR 431
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BLAST of mRNA_M-pyrifera_M_contig81959.19176.1 vs. uniprot
Match: D7FPL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL0_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.060e-11
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:  349 RGGAGAIVGAPVCAVRAVRDVGAWVFNWCLLPALYPFEILGLR 477
            RGG GA+VGAP  A +AV   G W+FNWCLLP +YP EILGLR
Sbjct:   96 RGGVGAVVGAPASAAQAVLHAGVWLFNWCLLPMIYPLEILGLR 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81959.19176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KA25_9PHAE1.120e-2454.25Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
D7FPL0_ECTSI3.060e-1167.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81959contigM-pyrifera_M_contig81959:185..721 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue6.2e-10
Seed eggNOG ortholog2880.D7FPL0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size477
Cds size477
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.8881862-CDS-M-pyrifera_M_contig81959:184..5471622816726.8881862-CDS-M-pyrifera_M_contig81959:184..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81959 185..547 +
1692278143.2318108-CDS-M-pyrifera_M_contig81959:184..5471692278143.2318108-CDS-M-pyrifera_M_contig81959:184..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81959 185..547 +
1622816726.8998528-CDS-M-pyrifera_M_contig81959:607..7211622816726.8998528-CDS-M-pyrifera_M_contig81959:607..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81959 608..721 +
1692278143.2463207-CDS-M-pyrifera_M_contig81959:607..7211692278143.2463207-CDS-M-pyrifera_M_contig81959:607..721Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81959 608..721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81959.19176.1prot_M-pyrifera_M_contig81959.19176.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81959 185..721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81959.19176.1

>prot_M-pyrifera_M_contig81959.19176.1 ID=prot_M-pyrifera_M_contig81959.19176.1|Name=mRNA_M-pyrifera_M_contig81959.19176.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MPPPPSPVVGESSAPRRYVLMGHSMGCITAATVSLDPSLPPEQTTLVVVS
PALSLPSSKRMKRNARFAAPAGVPGAPPPSETPQAPENARVPTSGDGGDG
GGGGRLARGFREGVLPRGGAGAIVGAPVCAVRAVRDVGAWVFNWCLLPAL
YPFEILGLR
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mRNA from alignment at M-pyrifera_M_contig81959:185..721+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81959.19176.1 ID=mRNA_M-pyrifera_M_contig81959.19176.1|Name=mRNA_M-pyrifera_M_contig81959.19176.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig81959:185..721+ (Macrocystis pyrifera P11B4 male)
ATGCCGCCGCCGCCGTCGCCCGTCGTTGGAGAGAGCAGCGCACCGCGGCG
GTACGTCCTGATGGGGCACTCCATGGGATGTATTACGGCGGCCACCGTGA
GCCTCGACCCCTCGCTGCCGCCGGAGCAAACCACCCTCGTCGTGGTCTCG
CCAGCCCTGTCTCTGCCCTCCAGCAAAAGAATGAAACGGAACGCACGATT
TGCTGCGCCGGCGGGGGTGCCGGGGGCGCCGCCGCCATCGGAGACGCCGC
AGGCGCCAGAGAATGCGCGGGTTCCGACGAGCGGCGACGGTGGCGATGGC
GGGGGGGGAGGGCGTCTTGCTCGGGGTTTCCGCGAAGGCGTTCTCCCTCG
CGGGGGGGCTGGGGTGGGGAGGGAGAGCCGCACGAGGCGAAGGAGAGGGG
GGGGGGGGCGTGACCTGGCGGAGGCCATAGTAGGGGCTCCGGTTTGTGCC
GTGAGGGCGGTGCGCGACGTTGGGGCGTGGGTGTTCAACTGGTGCCTCCT
GCCAGCGCTGTATCCGTTCGAGATTCTGGGACTCAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig81959:185..721+

>mRNA_M-pyrifera_M_contig81959.19176.1 ID=mRNA_M-pyrifera_M_contig81959.19176.1|Name=mRNA_M-pyrifera_M_contig81959.19176.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig81959:185..721+ (Macrocystis pyrifera P11B4 male)
ATGCCGCCGCCGCCGTCGCCCGTCGTTGGAGAGAGCAGCGCACCGCGGCG
GTACGTCCTGATGGGGCACTCCATGGGATGTATTACGGCGGCCACCGTGA
GCCTCGACCCCTCGCTGCCGCCGGAGCAAACCACCCTCGTCGTGGTCTCG
CCAGCCCTGTCTCTGCCCTCCAGCAAAAGAATGAAACGGAACGCACGATT
TGCTGCGCCGGCGGGGGTGCCGGGGGCGCCGCCGCCATCGGAGACGCCGC
AGGCGCCAGAGAATGCGCGGGTTCCGACGAGCGGCGACGGTGGCGATGGC
GGGGGGGGAGGGCGTCTTGCTCGGGGTTTCCGCGAAGGCGTTCTCCCTCG
CGGGGGGGCTGGGATGCCGCCGCCGCCGTCGCCCGTCGTTGGAGAGAGCA
GCGCACCGCGGCGGTACGTCCTGATGGGGCACTCCATGGGATGTATTACG
GCGGCCACCGTGAGCCTCGACCCCTCGCTGCCGCCGGAGCAAACCACCCT
CGTCGTGGTCTCGCCAGCCCTGTCTCTGCCCTCCAGCAAAAGAATGAAAC
GGAACGCACGATTTGCTGCGCCGGCGGGGGTGCCGGGGGCGCCGCCGCCA
TCGGAGACGCCGCAGGCGCCAGAGAATGCGCGGGTTCCGACGAGCGGCGA
CGGTGGCGATGGCGGGGGGGGAGGGCGTCTTGCTCGGGGTTTCCGCGAAG
GCGTTCTCCCTCGCGGGGGGGCTGGGGCCATAGTAGGGGCTCCGGTTTGT
GCCGTGAGGGCGGTGCGCGACGTTGGGGCGTGGGTGTTCAACTGGTGCCT
CCTGCCAGCGCTGTATCCGTTCGAGATTCTGGGACTCAGGGCCATAGTAG
GGGCTCCGGTTTGTGCCGTGAGGGCGGTGCGCGACGTTGGGGCGTGGGTG
TTCAACTGGTGCCTCCTGCCAGCGCTGTATCCGTTCGAGATTCTGGGACT
CAGG
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