mRNA_M-pyrifera_M_contig8193.19171.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8193.19171.1
Unique NamemRNA_M-pyrifera_M_contig8193.19171.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: D8LBD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBD6_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 1.930e-124
Identity = 255/273 (93.41%), Postives = 260/273 (95.24%), Query Frame = 1 
Query:    1 MAEVEDRIVISKRKGDGGGENPDKRLRVETQAALAIVEKQNIMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTGNLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRGIK 819
            MAEVEDRIVISKRKGDG     +KRLRVETQAALAIVEKQNI RSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGEC NYNVL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGH+GVVNSCSISRTGNL+AS SDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQ VMSGGIDN+IKVFDVRKLD+AYTM GHTDT XXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTF GIK
Sbjct:    1 MAEVEDRIVISKRKGDGEDGGQEKRLRVETQAALAIVEKQNIARSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECANYNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHSGVVNSCSISRTGNLMASASDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNEIKVFDVRKLDIAYTMTGHTDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFHGIK 273
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: A0A835ZD06_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD06_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.670e-58
Identity = 152/270 (56.30%), Postives = 180/270 (66.67%), Query Frame = 1 
Query:   10 VEDRIVISKRKGDGGGENPDKRLRVETQAALAIVEKQNIMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECE-NYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTG-NLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRG 813
            VEDRI + KR  +  G   DKR RV+TQAALA+V+ Q I R+S L+APTMLLTGH+AAVY++ FDP G  LAS   D+ I LWD  GE   NYNVL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA  G RK+ +KGHT VVNS S+SRT  NL+A+GSDD  V+LWD R RR V  F   YQVTAV +   D  V SGGIDN+I+V+D+R+   A+ M+GH DT+                           PFA +  L KT+RG
Sbjct:    3 VEDRIAVIKRSREPDGYGADKRFRVDTQAALAVVQSQGIQRTSGLVAPTMLLTGHEAAVYSVAFDPKGAHLASGSFDKTIMLWDVFGEGSCNYNVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGKGTRKRLYKGHTKVVNSVSMSRTQKNLMATGSDDCTVRLWDARERREVMTFTTLYQVTAVEMGLGDLVVFSGGIDNNIRVWDLRREAQAFAMEGHRDTITGLALSPSGTSLLANSMDRTLCEWDVRPFATERCL-KTYRG 271
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: A0A6H5JPD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPD3_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.830e-51
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:  448 CSISRTGNLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRGIK 819
            CSISRTGNLVAS SDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQ VMSGGIDN+IKVFDVRKLD+AYTM GHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXX PF NQNRLEKTF GIK
Sbjct:    3 CSISRTGNLVASASDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQQVMSGGIDNEIKVFDVRKLDIAYTMTGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXRPFVNQNRLEKTFHGIK 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: A0A6H5JPZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPZ8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.990e-51
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 MAEVEDRIVISKRKGDGGGENPDKRLRVETQAALAIVEKQNIMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLR 297
            MAEVEDRIVISKRKGDG     +KRLRVETQAALAIVEKQNI RSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGEC NYNVLR
Sbjct:    1 MAEVEDRIVISKRKGDGEDGGQEKRLRVETQAALAIVEKQNIARSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECANYNVLR 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: L1JBT6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBT6_GUITC)

HSP 1 Score: 169 bits (427), Expect = 6.400e-47
Identity = 116/188 (61.70%), Postives = 137/188 (72.87%), Query Frame = 1 
Query:  130 RSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTGNLV-ASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTV 690
            R+S LLAP MLL GH   V T++FDPTG  LASAG D+ IFLW+  G+C NY VL+ XXXXXXXXXXXXXXXXXXXXXXXXXX    A  GKR K F GH+  VNSC  +R G L+ AS SDDG +K+WDPRVR +V      YQVTAV LS D   V SGG+DN+IK++D+RK ++  TM GHTDT+
Sbjct:   31 RTSALLAPIMLLQGHGGEVLTVRFDPTGKYLASAGHDKDIFLWEVYGDCVNYGVLKGXXXXXXXXXXXXXXXXXXXXXXXXXXMFWDAETGKRIKKFSGHSSFVNSCCCTRRGVLIGASASDDGTIKVWDPRVRNAVTSLEESYQVTAVELSDDGNRVFSGGLDNEIKIWDLRKEEIELTMSGHTDTL 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: A0A443SP22_9ACAR (U5 small nuclear ribonucleoprotein 40 kDa protein-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SP22_9ACAR)

HSP 1 Score: 164 bits (416), Expect = 3.500e-45
Identity = 126/252 (50.00%), Postives = 156/252 (61.90%), Query Frame = 1 
Query:   64 PDKRLRVET-QAALAIVEKQNIMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTG-NLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRG 813
            P K+  + T  A  +I+E     R+S+L +P MLLTGHQ  VY  KF P G  LASAG DR I+ W+T GECENY+V+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +  G R K FKGH G+VNSC  SR G NLV SG DD  +K+WD R +  +  F  +Y V AV  + +   V+ GGI+N +KV+D+RK ++ YTM GH D+V                           PFA+Q R  KT +G
Sbjct:   20 PQKKSLIATPDAKKSILETPGPARTSSLSSPIMLLTGHQGEVYCAKFHPNGNTLASAGHDRLIYFWNTYGECENYSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSQTGARIKKFKGHNGIVNSCHTSRRGPNLVCSGGDDCHIKIWDTRKKGVIHSFKEKYPVLAVTFNENSDQVVIGGIENLVKVYDLRKNEILYTMMGHYDSVTGLSLSPDGSFVLSNAMDNSLCIWDIRPFASQERCVKTLQG 271
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: A0A8H7BQ84_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BQ84_9FUNG)

HSP 1 Score: 164 bits (415), Expect = 6.240e-45
Identity = 146/278 (52.52%), Postives = 185/278 (66.55%), Query Frame = 1 
Query:   22 IVISKRKGDGGGENPD---KRLRVETQAALAIVEKQN----------IMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTG-NLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRG 813
            + + KRK   G  N     KR + ET+ +L  +  +           + R+S+L AP M L+GH   ++T +F+ TG  +AS   DR I LWDT GEC+NY +L+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G R + +KGHTGVVNSC+++R G   VAS SDDG ++LWD R + +V  F ++YQVT+VC S     V SGG+DN+IKV+D+RK  +AYT+ GH DT+        XXXXXXXXXXXXXXXXX  PFA  +R  K F G
Sbjct:    1 MSVEKRKASPGPSNDTALVKRTKQETEISLVTLSTERSGTSNAIVGTVKRTSSLEAPVMQLSGHSGEIFTCEFNSTGEHIASGSFDRTILLWDTYGECKNYGLLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKTGGRVRRWKGHTGVVNSCAVARRGPETVASASDDGSIRLWDSRDKDAVQIFEDKYQVTSVCFSDAGDMVYSGGLDNEIKVWDLRKKGVAYTLTGHLDTIAGLSLSPDXXXXXXXXXXXXXXXXXVKPFAPADRCVKVFDG 278
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: S2JES3_MUCC1 (Uncharacterized protein n=6 Tax=Mucoraceae TaxID=34489 RepID=S2JES3_MUCC1)

HSP 1 Score: 164 bits (414), Expect = 9.200e-45
Identity = 108/231 (46.75%), Postives = 132/231 (57.14%), Query Frame = 1 
Query:  124 IMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTG-NLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRG 813
            I R+S L AP M L GH   +Y+  FD +G  +ASAG DR I LW+T GE +NY VL+                                  G R + ++GHTG+VNSC ++R G  LV SGSDD  VK+WD R + +V  F N+YQVT+VC S     + S G+DNDIKV+DVRK  LAYTM+GH DTV           XXXXXXXXXXXXXXX PFA  +R  K F G
Sbjct:   49 IKRTSGLEAPVMQLIGHDGEIYSCNFDQSGEYIASAGFDRQILLWNTYGEVKNYGVLKGHTNAVMEIHWSRDSNQIFSCSADKTVGIFDVKTGTRSRRWRGHTGIVNSCQVARRGAELVVSGSDDCTVKIWDSRAKEAVNTFENEYQVTSVCFSDAGDMIYSAGLDNDIKVWDVRKNQLAYTMKGHMDTVSGMSLSPDGNNXXXXXXXXXXXXXXXKPFAAADRCLKIFEG 279
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: A0A1Y1LMA8_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LMA8_PHOPY)

HSP 1 Score: 163 bits (412), Expect = 1.280e-44
Identity = 156/267 (58.43%), Postives = 184/267 (68.91%), Query Frame = 1 
Query:   22 IVISKRKGDGGGENP-DKRLRVETQAAL-AIVEKQNIMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTG-NLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRG 813
            I  SKRK D     P  K+ R E   +    +    + R+S L AP MLL GH+  ++TL+F P G  LAS+G DR IFLW   GECEN +V+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G+R K +KGHT  VNSC  +R G   + SGSDD  ++LWD R R SV+     YQVTAV  S   +H+ S GIDN+IKV+D+RK +L Y+M+GH DTVXXXXXXXXXXXXXXXXXXXXXXXXXX P+A Q R  K F G
Sbjct:    2 ISESKRKADDSALVPVSKKTRNEVAVSRNKALSSTTVARTSNLFAPIMLLEGHEGEIFTLEFHPEGQYLASSGFDRRIFLWSVYGECENLSVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIATGQRVKKYKGHTNFVNSCQGARRGPQTLVSGSDDSTIRLWDTRKRNSVSTISTPYQVTAVTFSDTAEHIYSSGIDNEIKVWDIRKNELLYSMRGHADTVXXXXXXXXXXXXXXXXXXXXXXXXXXRPYAPQERCVKVFTG 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Match: A0A068SGF1_9FUNG (U5 small nuclear ribonucleoprotein 40 kdaprotein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068SGF1_9FUNG)

HSP 1 Score: 162 bits (411), Expect = 2.610e-44
Identity = 114/231 (49.35%), Postives = 144/231 (62.34%), Query Frame = 1 
Query:  124 IMRSSTLLAPTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANAGKRKKTFKGHTGVVNSCSISRTG-NLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHVMSGGIDNDIKVFDVRKLDLAYTMQGHTDTVXXXXXXXXXXXXXXXXXXXXXXXXXXXPFANQNRLEKTFRG 813
            I R+S+L AP M L GH+  +++ KFDP+G  +AS   DR I LW+T G+C NY VLR                               A  G+R + +KGHT VVNSC ++R G   V SGSDDG +KLWD R + +V  F ++YQVT+VC S     V +GG+DN+IKV+D+RK  +AYT+ GH DT+  XXXXXXXXXXXXXXXXXXXXXXXXXPFA  +R  K   G
Sbjct:   52 IKRTSSLQAPVMQLIGHEGEIFSSKFDPSGDHIASVSYDRQILLWNTYGDCNNYGVLRGHANAILEVHWSRDGSQLFSCSADKTVAIWDATTGERVRRWKGHTLVVNSCQVARRGPETVVSGSDDGCIKLWDSRSKDAVQNFQDKYQVTSVCFSDAGDMVYTGGLDNEIKVWDIRKKAVAYTLSGHLDTITGXXXXXXXXXXXXXXXXXXXXXXXXXPFAPADRCTKVLEG 282
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8193.19171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD6_ECTSI1.930e-12493.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZD06_9STRA2.670e-5856.30WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A6H5JPD3_9PHAE1.830e-5193.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPZ8_9PHAE1.990e-5191.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L1JBT6_GUITC6.400e-4761.70Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A443SP22_9ACAR3.500e-4550.00U5 small nuclear ribonucleoprotein 40 kDa protein-... [more]
A0A8H7BQ84_9FUNG6.240e-4552.52Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
S2JES3_MUCC19.200e-4546.75Uncharacterized protein n=6 Tax=Mucoraceae TaxID=3... [more]
A0A1Y1LMA8_PHOPY1.280e-4458.43Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A068SGF1_9FUNG2.610e-4449.35U5 small nuclear ribonucleoprotein 40 kdaprotein n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8193contigM-pyrifera_M_contig8193:9273..12010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.0
Seed ortholog evalue1.9e-99
Seed eggNOG ortholog2880.D8LBD6
Preferred nameSNRNP40
KEGG rclassRC00004,RC00740
KEGG koko:K01759,ko:K12857
KEGG ReactionR02530
KEGG Pathwayko00620,ko03040,map00620,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000429,GO:0000430,GO:0000433,GO:0000988,GO:0000989,GO:0001076,GO:0001191,GO:0001196,GO:0001198,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007154,GO:0007530,GO:0007531,GO:0007532,GO:0007584,GO:0008150,GO:0008152,GO:0008289,GO:0008380,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010570,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016584,GO:0016604,GO:0016607,GO:0017053,GO:0019216,GO:0019217,GO:0019219,GO:0019222,GO:0019899,GO:0022414,GO:0022607,GO:0030154,GO:0030532,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031974,GO:0031981,GO:0032502,GO:0032879,GO:0032991,GO:0034641,GO:0034728,GO:0035091,GO:0035950,GO:0035952,GO:0035953,GO:0035955,GO:0036033,GO:0040008,GO:0042221,GO:0042304,GO:0042393,GO:0042826,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043486,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045013,GO:0045014,GO:0045165,GO:0045292,GO:0045892,GO:0045893,GO:0045894,GO:0045934,GO:0045935,GO:0045944,GO:0045990,GO:0046015,GO:0046483,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0062012,GO:0065007,GO:0070013,GO:0070784,GO:0070887,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071103,GO:0071496,GO:0071704,GO:0071824,GO:0071840,GO:0072364,GO:0080025,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090088,GO:0090089,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1900428,GO:1901360,GO:1901363,GO:1901981,GO:1902494,GO:1902679,GO:1902680,GO:1902936,GO:1903506,GO:1903507,GO:1903508,GO:1990904,GO:2000112,GO:2000113,GO:2000217,GO:2000531,GO:2000877,GO:2000879,GO:2001020,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0265@1,KOG0265@2759
EC4.4.1.5
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons4
Model size822
Cds size822
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8193.19171.1prot_M-pyrifera_M_contig8193.19171.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8193 9273..12010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.6738985-CDS-M-pyrifera_M_contig8193:9272..95811622816726.6738985-CDS-M-pyrifera_M_contig8193:9272..9581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 9273..9581 +
1692278143.109946-CDS-M-pyrifera_M_contig8193:9272..95811692278143.109946-CDS-M-pyrifera_M_contig8193:9272..9581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 9273..9581 +
1622816726.6863143-CDS-M-pyrifera_M_contig8193:10289..104031622816726.6863143-CDS-M-pyrifera_M_contig8193:10289..10403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 10290..10403 +
1692278143.124217-CDS-M-pyrifera_M_contig8193:10289..104031692278143.124217-CDS-M-pyrifera_M_contig8193:10289..10403Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 10290..10403 +
1622816726.6990077-CDS-M-pyrifera_M_contig8193:11105..113761622816726.6990077-CDS-M-pyrifera_M_contig8193:11105..11376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 11106..11376 +
1692278143.1333334-CDS-M-pyrifera_M_contig8193:11105..113761692278143.1333334-CDS-M-pyrifera_M_contig8193:11105..11376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 11106..11376 +
1622816726.7116156-CDS-M-pyrifera_M_contig8193:11882..120101622816726.7116156-CDS-M-pyrifera_M_contig8193:11882..12010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 11883..12010 +
1692278143.142863-CDS-M-pyrifera_M_contig8193:11882..120101692278143.142863-CDS-M-pyrifera_M_contig8193:11882..12010Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8193 11883..12010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8193.19171.1

>prot_M-pyrifera_M_contig8193.19171.1 ID=prot_M-pyrifera_M_contig8193.19171.1|Name=mRNA_M-pyrifera_M_contig8193.19171.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
MAEVEDRIVISKRKGDGGGENPDKRLRVETQAALAIVEKQNIMRSSTLLA
PTMLLTGHQAAVYTLKFDPTGLQLASAGADRAIFLWDTRGECENYNVLRG
HKNAILELHWSPHSPTIITCSADKTLGYWDANAGKRKKTFKGHTGVVNSC
SISRTGNLVASGSDDGFVKLWDPRVRRSVAEFMNQYQVTAVCLSRDDQHV
MSGGIDNDIKVFDVRKLDLAYTMQGHTDTVTGLSLSPDGNHLLSNSMDNS
VMMWDVRPFANQNRLEKTFRGIKV
back to top

mRNA from alignment at M-pyrifera_M_contig8193:9273..12010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8193.19171.1 ID=mRNA_M-pyrifera_M_contig8193.19171.1|Name=mRNA_M-pyrifera_M_contig8193.19171.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2738bp|location=Sequence derived from alignment at M-pyrifera_M_contig8193:9273..12010+ (Macrocystis pyrifera P11B4 male)
ATGGCGGAGGTAGAAGATCGAATTGTCATCTCGAAGAGGAAGGGAGATGG
TGGCGGCGAGAACCCAGACAAGCGGCTGCGAGTCGAGACACAAGCTGCGT
TAGCCATCGTGGAGAAACAAAATATTATGCGCTCCTCAACGCTGTTAGCG
CCAACTATGTTGCTCACGGGACACCAGGCGGCGGTGTACACGCTGAAGTT
CGATCCTACGGGATTGCAACTCGCGAGTGCTGGAGCGGACAGAGCGATCT
TCCTGTGGGATACAAGGGGAGAGTGCGAAAACTACAACGTATTGAGAGGG
CACAAAAATGTGAGTGTGAAGTAGTCTGTAATCGACTGTCAAGCTGCACT
CTCGTCTCGCTGCCTCAAGCATTTGTACCTGGTAGACTATAATAGACTAC
GACTAGAGTGCGAAAACTACAACGTATTGAGAGGGCACAAAAATGTGAGT
GTGAAGTAGTCTGTAATCGACTGTCAAGCTGCACTCTCGTCTCGCTGCCT
CAAGCATTCGTACCTGGTAGACTATTTAATAGACTACTAGTACTATTAAT
ATTAATAGTGTTGTATTTATAGCTGTATAACTGGTAATACTGCTGGTGTA
ACGACAAGAACTCGTCATCATGTTTGGGCTTGATCGGTGACAATGCGTCC
GTCACTTGACGCAAGCAGCTACTCGTGTGATCGATGTGCACGTATATACA
TATATTTGTGTTGCTGCTATTAAAATGTGTTCACCAGGGTATCGTATAGT
GCCGTTGTCAGTTTTACGACACAAAGATGCCGCGTACTTCTTTGATCGTA
TACGTATACTCGTAGAGAGCTCAGATACCACCACCAGTAGCTCAACAACG
GGATGCAATTCGATTTTTGCTATTTCTAAAGAGCGGTGTTGGACCATAGA
TCAGAGCATGATGAGCGCACAACATTCCGAGAGATCCAGACACCAGACGT
CACTCAACTCCCGTCGTGAAATATTAACAGCGATGTCTTCCACCTCGCTG
CTGTGCCTCCCAAACAGGCCATCCTCGAGCTGCATTGGTCGCCGCATTCT
CCCACCATCATCACTTGCTCGGCGGACAAAACCTTGGGATACTGGGACGC
TAACGCCGGCAAGCGCAAGAAGACGTTCAAGGTGAAACTACTGCGTACAA
GACATTCGGGTGTTAAAAGTTGCCGCTCAGCCCGGTAGTCTTGGTGTCGT
GGTGTGGTATTGCTGTACGATGTTTTTTCTTTCGTGACGTCTTGCTGTTA
TATTCTTACTCGTGCTCTTACGTATAGCACTATTTTTAGTACGTTCTACT
CACGATACCAAACGGAGCCTTGTTCTCGGCATTTTGACGAGAAGTAGCGA
AAGGAATGCGAGCACGCAGTATATGCATGTGGAACGCGGAACTTGGGTGG
GGCGAGTTCGTGGCATCGACTCGTTGAAGCGCATGCTCTGGGTGGTCCAT
CCTTGTTCTCGTGCAGACGAGGCCGATGCTCGACACGCGTTTCGCCCACG
GTGCGTACGAACAAAGCAGCCGCTCACACAATATGAATTTTGCGTCGACT
CCCAATTTAGAGCACTTTTTTTTCGTTATTTTTTGTAATGTTTATGTTTG
AGCTCTTATATGAAGTTGCAGAGAGGGGATCGGCAACCTTAATAGCGCCC
AGCGGCGGTTCGGAGACCCGTGACTGCACAGCTATTTCCACAGCGCTCAA
CAAACCGAAACGGCCGCGTTCTTACGGTGCATCTCCCAACTCAATCCAGT
TACTGGGTCTCATTTGTAGCTCTCGCCCCCGATGTTGGTACATGAATGGT
ACCATGCCGGTATCATGTTGCCGCTATGAACAGGGACACACGGGCGTTGT
CAACAGCTGTTCCATATCGCGCACGGGAAACCTGGTCGCCTCCGGCTCGG
ACGATGGCTTCGTCAAGCTGTGGGATCCAAGGGTACGGCGATCTGTGGCA
GAGTTTATGAACCAGTACCAGGTGACGGCGGTGTGCCTGTCGAGAGACGA
CCAGCACGTGATGAGCGGGGGCATCGACAACGATATCAAGGTTTTCGACG
TACGGAAACTCGACCTCGCCTACACTATGCAGGGGCACACCGACACGGTA
ACAGGTGCGTGGCCAGAGGGGAGGGGTGTCTGGGGCGTGGAAAGCATAGT
CCAGTGATGAATCGCCAGAACGGTGTATTTCCGTGTCCGTTCTATCGAGG
TCTGCAACATCGTCGAGACTCTTTATCGTTGTTCGACGAGTGGGGATCTC
CTGCTCCTCAATGGGATGTTCTACATGCGAAATGCAAGGAGTTGCCCAGC
TCTGCTCTCAGTGCACGTTTTTTCTTGTCGTTTATTGGTGAAGGTTAGTG
AGATCAAAATACTTAGACGTATAGAAGAAATATTGGCTGATTCAGACGAA
GGTATTAAGACCCTTGACAAAGTGTTGTTAGAAGCAGAAATTGCTGAAAA
CAATTCGATTGGTACCCAGCTAATTACCCACCAAATAAGATAACCTCGAC
TTGAAAAAGAGTTATATTATAACCGTCTAGAGGGCGCCATGAATGACACC
GACACGCCCGCAATACGTACAACGTTTCCTTCTCCCACCGATACACGTGT
TGAATCGCAGGTCTCTCGCTCAGCCCAGATGGCAACCACCTTCTGTCCAA
CTCCATGGACAACAGCGTCATGATGTGGGACGTGCGCCCATTCGCCAATC
AAAACCGCCTGGAGAAGACGTTCCGGGGCATCAAGGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8193:9273..12010+

>mRNA_M-pyrifera_M_contig8193.19171.1 ID=mRNA_M-pyrifera_M_contig8193.19171.1|Name=mRNA_M-pyrifera_M_contig8193.19171.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig8193:9273..12010+ (Macrocystis pyrifera P11B4 male)
ATGGCGGAGGTAGAAGATCGAATTGTCATCTCGAAGAGGAAGGGAGATGG
TGGCGGCGAGAACCCAGACAAGCGGCTGCGAGTCGAGACACAAGCTGCGT
TAGCCATCGTGGAGAAACAAAATATTATGCGCTCCTCAACGCTGTTAGCG
CCAACTATGTTGCTCACGGGACACCAGGCGGCGGTGTACACGCTGAAGTT
CGATCCTACGGGATTGCAACTCGCGAGTGCTGGAGCGGACAGAGCGATCT
TCCTGTGGGATACAAGGGGAGAGTGCGAAAACTACAACGTATTGAGAGGG
CACAAAAATATGGCGGAGGTAGAAGATCGAATTGTCATCTCGAAGAGGAA
GGGAGATGGTGGCGGCGAGAACCCAGACAAGCGGCTGCGAGTCGAGACAC
AAGCTGCGTTAGCCATCGTGGAGAAACAAAATATTATGCGCTCCTCAACG
CTGTTAGCGCCAACTATGTTGCTCACGGGACACCAGGCGGCGGTGTACAC
GCTGAAGTTCGATCCTACGGGATTGCAACTCGCGAGTGCTGGAGCGGACA
GAGCGATCTTCCTGTGGGATACAAGGGGAGAGTGCGAAAACTACAACGTA
TTGAGAGGGCACAAAAATGCCATCCTCGAGCTGCATTGGTCGCCGCATTC
TCCCACCATCATCACTTGCTCGGCGGACAAAACCTTGGGATACTGGGACG
CTAACGCCGGCAAGCGCAAGAAGACGTTCAAGGCCATCCTCGAGCTGCAT
TGGTCGCCGCATTCTCCCACCATCATCACTTGCTCGGCGGACAAAACCTT
GGGATACTGGGACGCTAACGCCGGCAAGCGCAAGAAGACGTTCAAGGGAC
ACACGGGCGTTGTCAACAGCTGTTCCATATCGCGCACGGGAAACCTGGTC
GCCTCCGGCTCGGACGATGGCTTCGTCAAGCTGTGGGATCCAAGGGTACG
GCGATCTGTGGCAGAGTTTATGAACCAGTACCAGGTGACGGCGGTGTGCC
TGTCGAGAGACGACCAGCACGTGATGAGCGGGGGCATCGACAACGATATC
AAGGTTTTCGACGTACGGAAACTCGACCTCGCCTACACTATGCAGGGGCA
CACCGACACGGTAACAGGGACACACGGGCGTTGTCAACAGCTGTTCCATA
TCGCGCACGGGAAACCTGGTCGCCTCCGGCTCGGACGATGGCTTCGTCAA
GCTGTGGGATCCAAGGGTACGGCGATCTGTGGCAGAGTTTATGAACCAGT
ACCAGGTGACGGCGGTGTGCCTGTCGAGAGACGACCAGCACGTGATGAGC
GGGGGCATCGACAACGATATCAAGGTTTTCGACGTACGGAAACTCGACCT
CGCCTACACTATGCAGGGGCACACCGACACGGTAACAGGTCTCTCGCTCA
GCCCAGATGGCAACCACCTTCTGTCCAACTCCATGGACAACAGCGTCATG
ATGTGGGACGTGCGCCCATTCGCCAATCAAAACCGCCTGGAGAAGACGTT
CCGGGGCATCAAGGTGGTCTCTCGCTCAGCCCAGATGGCAACCACCTTCT
GTCCAACTCCATGGACAACAGCGTCATGATGTGGGACGTGCGCCCATTCG
CCAATCAAAACCGCCTGGAGAAGACGTTCCGGGGCATCAAGGTG
back to top