mRNA_M-pyrifera_M_contig81924.19168.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81924.19168.1
Unique NamemRNA_M-pyrifera_M_contig81924.19168.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A7S3MXX2_9SPIT (Rab GDP dissociation inhibitor n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3MXX2_9SPIT)

HSP 1 Score: 190 bits (482), Expect = 6.370e-55
Identity = 97/204 (47.55%), Postives = 138/204 (67.65%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDC--EGPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKF+MADGKLVK L+ T V RYLE   +   D S+V    AG GW+S+ +  + KVPA   EAL + L+GM++K  +  L  ++++   E P+  DG  + + PM  ++K+F ++D+T DF+GHA+ALH+ D Y    A +TIQ ++LY +S  R+G SPFLYP+YGL  LPEAFSR CA+ GGT+MLN  ++E+L  E GKV
Sbjct:   84 IPKFIMADGKLVKMLLHTKVTRYLEWKCV---DASYVVQHQAG-GWLSSEKMAVCKVPANDMEALKSSLMGMFEKKRVIGLYKYIQNVVPENPMTWDGIDIREAPMKDVFKKFNIEDNTIDFLGHAVALHSQDTYLYEPAIDTIQKMQLYLQSTGRYGQSPFLYPIYGLGGLPEAFSRLCAIHGGTYMLNTNVDEILFDEGGKV 283          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A7S3CUN3_9SPIT (Rab GDP dissociation inhibitor (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CUN3_9SPIT)

HSP 1 Score: 179 bits (455), Expect = 2.900e-52
Identity = 92/204 (45.10%), Postives = 135/204 (66.18%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDCE--GPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKF+MADGKLVK L+ T V +YLE   +   D S+V     G GW+S+ +  + KVP+   EAL + L+GM++K  +  L  ++++C+   P    G  +   PM  +++++GL+ +T DF+GHA+AL   D Y    A +TIQ ++LY +S+ R+G SPFLYP+YGL  LPEAFSR CA+ GGT+MLNR ++E+L   DGKV
Sbjct:   76 IPKFIMADGKLVKMLLHTKVTKYLEWKCV---DASYVVQHKKG-GWLSSEKMAVCKVPSNDMEALKSNLMGMFEKKRVINLYKYIENCDLNDPKTWKGIDIKTAPMKDVFEKYGLESNTIDFMGHAVALQYQDNYLFEPAIDTIQKMQLYLQSVGRYGESPFLYPIYGLGGLPEAFSRLCAIHGGTYMLNRNVDEILFDGDGKV 275          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A2P4YC75_9STRA (Rab GDP dissociation inhibitor (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC75_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.590e-52
Identity = 97/204 (47.55%), Postives = 136/204 (66.67%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDCE--GPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            VPKF+MA GKLVK L+ T V RYLE   +   DGS+V         +  GR    KVPAT  EAL + L+GM++K   R+L+ ++ + E   P   +G  L   PM+ +++++G+D +TQ F+GHAMAL   ++Y    A ET++AI+LYA SL R+G SP++YP+YGL  LPE+FSR CA+ GGTFMLNRG++E+L  +DGK 
Sbjct:   95 VPKFIMACGKLVKMLLHTKVTRYLEFKNV---DGSYV---------VKGGRS--YKVPATGEEALRSSLMGMFEKRKFRKLIMYIYNYEEDDPKTYEGMDLFTQPMSELFEKYGVDANTQSFMGHAMALMRDESYHKRPAIETVRAIKLYAYSLERYGKSPYIYPLYGLGGLPESFSRLCAINGGTFMLNRGVDEILTDKDGKA 284          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A7S3NTB8_EUPCR (Rab GDP dissociation inhibitor n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3NTB8_EUPCR)

HSP 1 Score: 182 bits (463), Expect = 3.720e-52
Identity = 97/205 (47.32%), Postives = 135/205 (65.85%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDCEGPVAPDGTVLTDV---PMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKF+MA+GKLVK L+ T V +YLE   +   +G++V+  S G G+ S+G   I KVP   SEAL + L+G+W+K   +    +V+D E    PD     D+   PMA ++K+F L+ +T DF+GHA+A+H  D Y    A+ TIQ I+LY  S+ R+G  PFLYP+YGL  +PE FSR CA+ GGT+MLN+ I+EVL G DGKV
Sbjct:   76 IPKFVMANGKLVKMLLKTTVDKYLEWKTV---EGTYVYQYSKG-GFFSSGGGKIFKVPGNDSEALKSSLMGLWEKKRCKNFFVYVQDIEED-NPDTWGKIDIKAQPMADVFKKFKLEANTIDFIGHAVAMHINDNYLDEPAYLTIQKIKLYIDSIGRYGEHPFLYPIYGLGGIPEGFSRFCAIHGGTYMLNKPIDEVLFGSDGKV 275          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A812YTI1_9DINO (Rab GDP dissociation inhibitor n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YTI1_9DINO)

HSP 1 Score: 181 bits (458), Expect = 4.220e-52
Identity = 96/204 (47.06%), Postives = 130/204 (63.73%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDCE--GPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKF+MA+GKLVK L+ T V  YL+    NK DG +V+      G          KVPAT+ EA++T L+G +QK  LR+ + +V   E   P   +G   +    A ++ +FGLDD++QDFVGHAMAL   + YK   A E ++A+RLY  SL R+G SPF+YPVYGL  LPE+FSR CAV GG FMLNR ++E +  +DG+V
Sbjct:   33 IPKFIMANGKLVKILVKTNVSHYLQ---FNKVDGCYVYKSGGNCG----------KVPATEKEAITTGLVGFFQKRKLRKFIIYVSKYEQDDPSTHEGFDCSKQTSAELFAKFGLDDNSQDFVGHAMALFFDETYKEKPALELVKAVRLYGTSLERYGSSPFIYPVYGLGGLPESFSRMCAVHGGVFMLNRDVDEFVYDDDGRV 223          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A812PB31_9DINO (Rab GDP dissociation inhibitor n=2 Tax=Sar TaxID=2698737 RepID=A0A812PB31_9DINO)

HSP 1 Score: 182 bits (462), Expect = 1.910e-51
Identity = 104/206 (50.49%), Postives = 129/206 (62.62%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETT-GINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDCEGPV-APDGTVLTDVPMAGIYKRF--GLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKFMMA+G L   L+ T V   ++ T G     G +VFS++ GKGW S G  G+EK+PAT SEA+S+PLL M QK +LR  L FV  CE P   PDGT LT      +Y +F    D D   FVGH MAL  +D Y    A   + AI+LY  S+ R   SPF+YP+YGLSTLPEAFSR CAV+GG FML   ++ +L  EDGKV
Sbjct:  119 IPKFMMAEGALKDVLVKTRVHTSIQATAGFAGIGGCYVFSKTLGKGWFSAGAAGVEKLPATPSEAMSSPLLSMAQKLSLRSFLVFVNGCETPQRGPDGTDLTKTTSRQLYAKFFSSSDADLPQFVGHGMALFPSDEYLDRPASNLVAAIQLYRDSIERVKTSPFIYPMYGLSTLPEAFSRLCAVQGGVFMLRTAVKGLLY-EDGKV 323          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A6A5ACM7_9STRA (Rab GDP dissociation inhibitor (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ACM7_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.240e-51
Identity = 99/204 (48.53%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDCE--GPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKF+MA GKLVK L+ T V RYLE   +   DGS+V+  S            I KVPAT  EALS+ L+G+++K   R L+ FV + E   P    G  L   PM+ +Y +FG+D +TQ F GHAMAL   D Y    A ET++A+++Y+ SL R+G SP++YP+YGL  LPE FSR CA+ GGTFMLNRG++EVL  +DGK 
Sbjct:   10 IPKFIMACGKLVKILLHTKVTRYLEFKNV---DGSYVYKGSR-----------IYKVPATGEEALSSSLMGIFEKRRFRGLIMFVYNYEEENPDTHQGLDLFKQPMSDVYAKFGVDANTQSFTGHAMALMRDDNYINRPAIETVRALKMYSYSLERYGKSPYIYPIYGLGGLPEGFSRLCAIHGGTFMLNRGVDEVLF-KDGKA 198          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A7S1CP58_9STRA (Rab GDP dissociation inhibitor n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CP58_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.030e-50
Identity = 98/197 (49.75%), Postives = 128/197 (64.97%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVK--DCEGPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVL 585
            +PKF+MADG LVK LI TGV  YL+     +  GS+V        W S G  G+ KVPAT+ EA+ST L+G +QK   R  L FV   D +     DG  L    MA +Y +FGLD++TQDF GHA A+ T D+Y    A ET++A++LYA SL R+G SPF+YP+YG+  LPE FSR CA+ GGTF+LN+ +EEV+
Sbjct:  150 IPKFIMADGALVKILIYTGVNNYLD---FKQIAGSYV--------WKSGG--GVHKVPATEVEAVSTGLMGFFQKRKFRNFLQFVAKADPDDESTWDGFDLKARTMAELYDKFGLDENTQDFTGHAFAMFTDDSYLAKPAMETLKAVKLYATSLDRYGTSPFIYPIYGIGGLPEGFSRLCAIHGGTFILNKSVEEVI 333          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A024FZZ5_9STRA (Rab GDP dissociation inhibitor n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZZ5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 1.150e-50
Identity = 100/204 (49.02%), Postives = 135/204 (66.18%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVKDCE--GPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKF+MA GKLVK L+ T V RYLE   +   DGS+V         + NG+    KVPAT  EAL + L+G+++K   R+L+ ++ + E   P   +G  L   PM+ +Y++FG+D +TQ F+GHAMAL T D Y G  A ETI+AI+LYA SL R+G SP+LYP+YGL  LPE FSR CA+ GGTFMLNRG++E+L    G+ 
Sbjct:   95 IPKFIMACGKLVKMLLHTKVTRYLEFKNV---DGSYV---------VKNGKS--YKVPATGEEALRSSLMGIFEKRKFRKLILYIYNYEEDDPKTFEGLDLKKQPMSQVYEKFGVDANTQSFMGHAMALWTDDRYLGKPAIETIRAIKLYAYSLERYGKSPYLYPIYGLGGLPEGFSRLCAIHGGTFMLNRGVDEILYDATGRA 284          
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Match: A0A139AZ52_GONPJ (Rab GDP dissociation inhibitor n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AZ52_GONPJ)

HSP 1 Score: 178 bits (452), Expect = 1.220e-50
Identity = 91/204 (44.61%), Postives = 135/204 (66.18%), Query Frame = 1
Query:    1 VPKFMMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGIEKVPATQSEALSTPLLGMWQKNALRELLGFVK--DCEGPVAPDGTVLTDVPMAGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLARHGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV 606
            +PKF MA+G+ VK L+ T V RYLE     +  GS+V+          +GR  I KVP ++ EA+S+PL+G+++K   +    F++  + + P   +G  +  VPM+ IYK+FGL+  TQDF+GHAMALH  D+Y    A +T + IRLY  SLAR+G SP++YP+YGL  LP++F+R  A+ GGT+MLN+ ++E++ G DGKV
Sbjct:   76 IPKFAMANGEFVKILVYTDVTRYLE---FKQVSGSYVYR---------DGR--IAKVPGSEIEAVSSPLMGIFEKRRAKRFFEFIQKYELDNPATQEGIDVKTVPMSEIYKKFGLEPGTQDFIGHAMALHLDDSYLTEPALQTYENIRLYMGSLARYGKSPYIYPMYGLGDLPQSFARLSAIYGGTYMLNKTVDEIVYGPDGKV 265          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81924.19168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3MXX2_9SPIT6.370e-5547.55Rab GDP dissociation inhibitor n=1 Tax=Strombidium... [more]
A0A7S3CUN3_9SPIT2.900e-5245.10Rab GDP dissociation inhibitor (Fragment) n=1 Tax=... [more]
A0A2P4YC75_9STRA3.590e-5247.55Rab GDP dissociation inhibitor (Fragment) n=2 Tax=... [more]
A0A7S3NTB8_EUPCR3.720e-5247.32Rab GDP dissociation inhibitor n=1 Tax=Euplotes cr... [more]
A0A812YTI1_9DINO4.220e-5247.06Rab GDP dissociation inhibitor n=1 Tax=Symbiodiniu... [more]
A0A812PB31_9DINO1.910e-5150.49Rab GDP dissociation inhibitor n=2 Tax=Sar TaxID=2... [more]
A0A6A5ACM7_9STRA2.240e-5148.53Rab GDP dissociation inhibitor (Fragment) n=1 Tax=... [more]
A0A7S1CP58_9STRA1.030e-5049.75Rab GDP dissociation inhibitor n=1 Tax=Bicosoecida... [more]
A0A024FZZ5_9STRA1.150e-5049.02Rab GDP dissociation inhibitor n=1 Tax=Albugo cand... [more]
A0A139AZ52_GONPJ1.220e-5044.61Rab GDP dissociation inhibitor n=1 Tax=Gonapodya p... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81924contigM-pyrifera_M_contig81924:315..920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue9.4e-40
Seed eggNOG ortholog653948.CCA14701
Preferred nameGDI2
KEGG koko:K03662,ko:K17255
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko05110,ko05120,ko05152,ko05161,ko05323,map00190,map01100,map04142,map04145,map05110,map05120,map05152,map05161,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001505,GO:0001558,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005092,GO:0005093,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005794,GO:0005829,GO:0006810,GO:0006836,GO:0006886,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007399,GO:0008021,GO:0008047,GO:0008104,GO:0008150,GO:0008361,GO:0009966,GO:0009987,GO:0010035,GO:0010038,GO:0010646,GO:0010720,GO:0010721,GO:0010769,GO:0010770,GO:0010771,GO:0010975,GO:0010976,GO:0010977,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023061,GO:0030133,GO:0030141,GO:0030154,GO:0030234,GO:0030307,GO:0030424,GO:0030496,GO:0030516,GO:0030695,GO:0031267,GO:0031344,GO:0031345,GO:0031346,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032386,GO:0032387,GO:0032482,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0034774,GO:0035556,GO:0035578,GO:0036230,GO:0036477,GO:0040008,GO:0042119,GO:0042221,GO:0042582,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043085,GO:0043087,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043547,GO:0044093,GO:0044297,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045321,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045666,GO:0045773,GO:0045927,GO:0046903,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050769,GO:0050770,GO:0050771,GO:0050772,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051051,GO:0051056,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051336,GO:0051345,GO:0051592,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051961,GO:0051962,GO:0060205,GO:0060284,GO:0060341,GO:0060589,GO:0061387,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090066,GO:0090087,GO:0090313,GO:0090315,GO:0090317,GO:0097458,GO:0097708,GO:0098772,GO:0098793,GO:0098916,GO:0099503,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120035,GO:1902531,GO:1903533,GO:1903827,GO:1903828,GO:1904950,GO:1905475,GO:1905476,GO:2000026
EggNOG free text desc.Rab GDP-dissociation inhibitor activity
EggNOG OGsCOG5044@1,KOG1439@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04147
Exons1
Model size606
Cds size594
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.5110083-UTR-M-pyrifera_M_contig81924:314..3261622816726.5110083-UTR-M-pyrifera_M_contig81924:314..326Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81924 315..326 +
1692278143.0186667-UTR-M-pyrifera_M_contig81924:314..3261692278143.0186667-UTR-M-pyrifera_M_contig81924:314..326Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig81924 315..326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.5280292-CDS-M-pyrifera_M_contig81924:326..9201622816726.5280292-CDS-M-pyrifera_M_contig81924:326..920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81924 327..920 +
1692278143.0335999-CDS-M-pyrifera_M_contig81924:326..9201692278143.0335999-CDS-M-pyrifera_M_contig81924:326..920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81924 327..920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81924.19168.1prot_M-pyrifera_M_contig81924.19168.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81924 327..920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81924.19168.1

>prot_M-pyrifera_M_contig81924.19168.1 ID=prot_M-pyrifera_M_contig81924.19168.1|Name=mRNA_M-pyrifera_M_contig81924.19168.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=198bp
MMADGKLVKTLIVTGVVRYLETTGINKTDGSFVFSQSAGKGWISNGRPGI
EKVPATQSEALSTPLLGMWQKNALRELLGFVKDCEGPVAPDGTVLTDVPM
AGIYKRFGLDDDTQDFVGHAMALHTTDAYKGHKAWETIQAIRLYAKSLAR
HGGSPFLYPVYGLSTLPEAFSRDCAVRGGTFMLNRGIEEVLRGEDGKV
back to top

mRNA from alignment at M-pyrifera_M_contig81924:315..920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81924.19168.1 ID=mRNA_M-pyrifera_M_contig81924.19168.1|Name=mRNA_M-pyrifera_M_contig81924.19168.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig81924:315..920+ (Macrocystis pyrifera P11B4 male)
GTGCCCAAGTTTATGATGGCCGATGGGAAGCTGGTGAAGACTCTGATTGT GACGGGGGTGGTGCGTTACTTGGAGACGACTGGGATCAACAAGACGGACG GCAGTTTTGTGTTCAGCCAGAGCGCGGGGAAAGGGTGGATTTCCAACGGT CGTCCCGGGATTGAAAAGGTGCCTGCGACACAGAGTGAAGCCTTGAGCAC TCCTCTGTTGGGAATGTGGCAAAAAAATGCCCTGCGTGAGCTGCTGGGGT TTGTCAAGGACTGCGAAGGCCCCGTTGCACCCGATGGAACGGTTTTGACA GACGTTCCAATGGCCGGCATTTACAAGCGGTTTGGGCTGGACGATGACAC GCAAGATTTCGTGGGCCACGCCATGGCGCTTCACACGACTGACGCGTACA AGGGTCACAAGGCCTGGGAAACCATCCAGGCCATTCGACTCTACGCCAAA TCGCTTGCTCGCCACGGCGGGTCCCCGTTCCTCTACCCAGTCTACGGTCT CTCCACACTTCCCGAAGCATTCTCACGAGATTGCGCTGTACGAGGGGGCA CCTTTATGCTCAATCGCGGAATCGAGGAGGTGTTGCGGGGAGAAGACGGT AAAGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81924:315..920+

>mRNA_M-pyrifera_M_contig81924.19168.1 ID=mRNA_M-pyrifera_M_contig81924.19168.1|Name=mRNA_M-pyrifera_M_contig81924.19168.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1188bp|location=Sequence derived from alignment at M-pyrifera_M_contig81924:315..920+ (Macrocystis pyrifera P11B4 male)
ATGATGGCCGATGGGAAGCTGGTGAAGACTCTGATTGTGACGGGGGTGGT
GCGTTACTTGGAGACGACTGGGATCAACAAGACGGACGGCAGTTTTGTGT
TCAGCCAGAGCGCGGGGAAAGGGTGGATTTCCAACGGTCGTCCCGGGATT
GAAAAGGTGCCTGCGACACAGAGTGAAGCCTTGAGCACTCCTCTGTTGGG
AATGTGGCAAAAAAATGCCCTGCGTGAGCTGCTGGGGTTTGTCAAGGACT
GCGAAGGCCCCGTTGCACCCGATGGAACGGTTTTGACAGACGTTCCAATG
GCCGGCATTTACAAGCGGTTTGGGCTGGACGATGACACGCAAGATTTCGT
GGGCCACGCCATGGCGCTTCACACGACTGACGCGTACAAGGGTCACAAGG
CCTGGGAAACCATCCAGGCCATTCGACTCTACGCCAAATCGCTTGCTCGC
CACGGCGGGTCCCCGTTCCTCTACCCAGTCTACGGTCTCTCCACACTTCC
CGAAGCATTCTCACGAGATTGCGCTGTACGAGGGGGCACCTTTATGCTCA
ATCGCGGAATCGAGGAGGTGTTGCGGGGAGAAGACGGTAAAGTGATGATG
GCCGATGGGAAGCTGGTGAAGACTCTGATTGTGACGGGGGTGGTGCGTTA
CTTGGAGACGACTGGGATCAACAAGACGGACGGCAGTTTTGTGTTCAGCC
AGAGCGCGGGGAAAGGGTGGATTTCCAACGGTCGTCCCGGGATTGAAAAG
GTGCCTGCGACACAGAGTGAAGCCTTGAGCACTCCTCTGTTGGGAATGTG
GCAAAAAAATGCCCTGCGTGAGCTGCTGGGGTTTGTCAAGGACTGCGAAG
GCCCCGTTGCACCCGATGGAACGGTTTTGACAGACGTTCCAATGGCCGGC
ATTTACAAGCGGTTTGGGCTGGACGATGACACGCAAGATTTCGTGGGCCA
CGCCATGGCGCTTCACACGACTGACGCGTACAAGGGTCACAAGGCCTGGG
AAACCATCCAGGCCATTCGACTCTACGCCAAATCGCTTGCTCGCCACGGC
GGGTCCCCGTTCCTCTACCCAGTCTACGGTCTCTCCACACTTCCCGAAGC
ATTCTCACGAGATTGCGCTGTACGAGGGGGCACCTTTATGCTCAATCGCG
GAATCGAGGAGGTGTTGCGGGGAGAAGACGGTAAAGTG
back to top