mRNA_M-pyrifera_M_contig81919.19165.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81919.19165.1
Unique NamemRNA_M-pyrifera_M_contig81919.19165.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: L8H6Y6_ACACA (Carboxypeptidase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6Y6_ACACA)

HSP 1 Score: 132 bits (332), Expect = 2.070e-33
Identity = 68/150 (45.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   25 RYLNSPSVQTALHAVPGL-WRSCGDPNLRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRFLAHG 471
            R+LN   VQ A+HA  G  W SC    L Y++   NML Y   ++E  P L++L F+GDVDI T+P A TQFCLN L RP+ + WK W V G +               AGY++V D YTF T+KGAGHEV ++QPA A+ +   FL  G
Sbjct:  335 RWLNREDVQKAIHARVGTKWESCTG-KLNYTEQNFNMLDYLGEIFEKKPQLKILYFTGDVDIATVPFAYTQFCLNALHRPIVKKWKPWYVPGVQA-------------VAGYSEVFDTYTFVTIKGAGHEVPMFQPALAYHVLSNFLKSG 470          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: L8H3Z1_ACACA (Carboxypeptidase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H3Z1_ACACA)

HSP 1 Score: 117 bits (292), Expect = 7.620e-28
Identity = 61/142 (42.96%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   55 ALHAVPGL-WRSCGDPNLRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRFLAHGRL 477
            A+HA  G  W  C    L Y+    NML Y    +   PDL++L +SGDVDI T+P A TQ+CLN L RP+ + WK W   G +               AGY++V D YTF T++GAGHE  +YQPA A+ +F  FL  G L
Sbjct:  317 AIHARVGTKWTECSRA-LNYTMQKQNMLVYLQEFFVKRPDLKILYYSGDVDIATVPFAYTQYCLNGLHRPIVKRWKPWYAPGVQA-------------VAGYSEVFDRYTFVTIRGAGHEAPMYQPALAYHVFSNFLQSGAL 444          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: A0A6B2L3K3_9EUKA (Carboxypeptidase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L3K3_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 1.040e-27
Identity = 63/151 (41.72%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   25 RYLNSPSVQTALHAVPGLWRSCGDPNLRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRFLAHGRL 477
            RYLN   VQ AL+     W  C    L Y+ +G +M+  Y+  +   P  ++LV+SGD DI T+P A TQ C+  L   +   W+ W V G                TAGY +V+D YT+ATVKGAGHE  LYQP  +F+L  RFL  GRL
Sbjct:  299 RYLNRADVQRALNVRSVAWSECSSM-LNYTIAGNSMVPLYEGFFTNKPSFQILVYSGDQDILTVPFAFTQPCIAQLSGKLVSDWQPWFVHG---------------ATAGYVEVYDKYTYATVKGAGHEAPLYQPLLSFQLIYRFLTTGRL 433          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: A0A7S4KTW6_9EUKA (Carboxypeptidase n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KTW6_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.880e-26
Identity = 64/150 (42.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:   28 YLNSPSVQTALHAVP---GLWRSCGDPN-LRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCL-NLLDRPVR-EPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRF 459
            YLN   VQTA+HA P   G W  C   + L+Y+ SG +M+ +Y  L    PD+ +LV+SGD+DI T+P A TQ CL  L   P++ + W  W V G                TAGY +  + YT+ATVKGAGH V  YQP  A+ +F+RF
Sbjct:  320 YLNRQDVQTAIHAQPPPAGEWEICTPGSTLQYNISGESMIPFYQNLIATRPDVTILVYSGDIDIATVPAAQTQLCLAELQGTPIQGKTWAPWYVNG---------------ATAGYVEYFEEYTYATVKGAGHTVPTYQPLTAYNMFERF 454          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: F2U2V1_SALR5 (Carboxypeptidase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U2V1_SALR5)

HSP 1 Score: 112 bits (280), Expect = 3.870e-26
Identity = 64/157 (40.76%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   28 YLNSPSVQTALH------------AVPGLWRSCGDPNLRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRFL 462
            +LN   VQ ALH            A PG  +S G   L Y+   A++L  Y L ++  PDLR+LV+SGD+DI T P A  Q CL+ L       W+ WRV G             +N TAGY +V+  +T+ATVKGAGHEV  +QPA AF +  +F+
Sbjct:  315 WLNQKDVQAALHVHDDKRKWVTCCAEPG--QSGGHCQLNYTNHWADILPLYRLFFDKRPDLRILVYSGDLDIATCPFAYAQLCLSELGYTATRQWQPWRVPG------------GANQTAGYVEVYPRFTYATVKGAGHEVPQFQPAAAFHMVSKFI 457          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: A0A7S4MJH2_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MJH2_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 1.010e-25
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   49 QTALHAVPGLWRSCGDPNLRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRFL 462
            Q A++A P  W  C    L Y +    +  Y +  +E+AP++R++ +SGDVD+ T+P A TQ CL  ++RPV + W+ W +          N E       GY + +D YT+AT+KGAGHE   +QPA A+ LF  FL
Sbjct:    1 QQAINAQPTSWTECTS-KLAYRKLNMPITNYLEQFFEIAPEMRIMYYSGDVDLATVPFAETQRCLATMNRPVTDHWRPWVI----------NKE-----VVGYVEEYDTYTYATIKGAGHEAPQFQPAAAYLLFTSFL 122          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: A0A7S4NTA5_9EUKA (Carboxypeptidase n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NTA5_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 6.750e-25
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   28 YLNSPSVQTALHA---VPGLWRSCGDPNLRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRF 459
            YL+   VQ ALHA   V G W  CG P   Y  +  +M+ YY+ L+ + PD+ VL++SGDVDI T+P  +T   L  L+  ++  W  W V G                T GY Q +D Y +ATVKGAGHE   YQP  +  + +RF
Sbjct:  327 YLSRSDVQAALHAHAPVQGSWEICGFPG-NYIPTAGSMIPYYESLFSLRPDVHVLIYSGDVDIATVPGPITTKALLPLNSTIKTEWAPWYVNG---------------ATVGYVQYYDTYAYATVKGAGHEGPAYQPLSSHNMIERF 457          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: A0A7S4KWY4_9EUKA (Carboxypeptidase n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KWY4_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 7.490e-25
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   28 YLNSPSVQTALHA---VPGLWRSCGDPNLRYSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRF 459
            YL+   VQ ALHA   V G W  CG P   Y  +  +M+ YY+ L+ + PD+ VL++SGDVDI T+P  +T   L  L+  ++  W  W V G                T GY Q +D Y +ATVKGAGHE   YQP  +  + +RF
Sbjct:  346 YLSRSDVQAALHAHAPVQGSWEICGFPG-NYIPTAGSMIPYYESLFSLRPDVHVLIYSGDVDIATVPGPITTKALLPLNSTIKTEWAPWYVNG---------------ATVGYVQYYDTYAYATVKGAGHEGPAYQPLSSHNMIERF 476          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: A0A2G9GSD4_9LAMI (Carboxypeptidase n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9GSD4_9LAMI)

HSP 1 Score: 104 bits (259), Expect = 3.370e-23
Identity = 63/152 (41.45%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   25 RYLNSPSVQTALHA----VPGLWRSCGDPNLR-YSQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRFLA 465
            +Y N P VQ ALHA    +P  W +C D  +R +  S  +ML  Y  L  +A  LR+ VFSGD D + +P   T+F L+ L+  V+ PW  W   G                  G+ +V+DG TFATV+GAGHEV L+QP  AFELF+ FL+
Sbjct:  319 KYYNRPDVQKALHANSTGIPYNWTACSDVLIRNWKDSNTSMLPTYKKL--IAAGLRIWVFSGDTD-SVVPVTATRFSLSHLNLKVKAPWYPWYSNGQ---------------VGGWTEVYDGLTFATVRGAGHEVPLFQPRRAFELFKTFLS 452          
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Match: A0A834X644_9FABA (Serine carboxypeptidase 24 n=1 Tax=Senna tora TaxID=362788 RepID=A0A834X644_9FABA)

HSP 1 Score: 97.1 bits (240), Expect = 6.790e-22
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   25 RYLNSPSVQTALHA----VPGLWRSCGDPNLRY-SQSGANMLRYYDLLYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGPRLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELFQRFLAHGRL 477
            +Y N P VQ A+HA    +P  W +C D  L+Y   S  ++L  Y  L  +A  LR+ VFSGD D + +P   T+F LN L+  ++  +  W   G                  G+++V++G TFATV+GAGHEV L+QP  AF LF+ FLA  +L
Sbjct:   82 KYYNRPDVQKAMHANVTNIPYKWTACSDVLLKYWKDSAVSVLPIYKEL--IAAGLRIWVFSGDTD-SVVPVTATRFSLNSLNLTIKTRYYPWYSGGQ---------------VGGWSEVYEGLTFATVRGAGHEVPLFQPGRAFTLFRSFLAGKKL 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81919.19165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H6Y6_ACACA2.070e-3345.33Carboxypeptidase n=1 Tax=Acanthamoeba castellanii ... [more]
L8H3Z1_ACACA7.620e-2842.96Carboxypeptidase n=1 Tax=Acanthamoeba castellanii ... [more]
A0A6B2L3K3_9EUKA1.040e-2741.72Carboxypeptidase n=1 Tax=Arcella intermedia TaxID=... [more]
A0A7S4KTW6_9EUKA1.880e-2642.67Carboxypeptidase n=1 Tax=Paramoeba aestuarina TaxI... [more]
F2U2V1_SALR53.870e-2640.76Carboxypeptidase n=1 Tax=Salpingoeca rosetta (stra... [more]
A0A7S4MJH2_9EUKA1.010e-2538.41Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4NTA5_9EUKA6.750e-2539.46Carboxypeptidase n=1 Tax=Paramoeba aestuarina TaxI... [more]
A0A7S4KWY4_9EUKA7.490e-2539.46Carboxypeptidase n=1 Tax=Paramoeba aestuarina TaxI... [more]
A0A2G9GSD4_9LAMI3.370e-2341.45Carboxypeptidase n=1 Tax=Handroanthus impetiginosu... [more]
A0A834X644_9FABA6.790e-2238.46Serine carboxypeptidase 24 n=1 Tax=Senna tora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81919contigM-pyrifera_M_contig81919:426..914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score113.2
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog946362.XP_004996128.1
KEGG koko:K09645,ko:K13289,ko:K16296,ko:K16297
KEGG Pathwayko04142,ko04614,map04142,map04614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the peptidase S10 family
EggNOG OGs38FWP@33154,COG2939@1,KOG1282@2759
EC3.4.16.5
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Exons1
Model size489
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816726.3562384-CDS-M-pyrifera_M_contig81919:425..9141622816726.3562384-CDS-M-pyrifera_M_contig81919:425..914Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81919 426..914 -
1692278142.9226606-CDS-M-pyrifera_M_contig81919:425..9141692278142.9226606-CDS-M-pyrifera_M_contig81919:425..914Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81919 426..914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81919.19165.1prot_M-pyrifera_M_contig81919.19165.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81919 426..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81919.19165.1

>prot_M-pyrifera_M_contig81919.19165.1 ID=prot_M-pyrifera_M_contig81919.19165.1|Name=mRNA_M-pyrifera_M_contig81919.19165.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MTGGANKCRYLNSPSVQTALHAVPGLWRSCGDPNLRYSQSGANMLRYYDL
LYEMAPDLRVLVFSGDVDINTIPHALTQFCLNLLDRPVREPWKAWRVQGP
RLPQLIPNSEENSNVTAGYAQVHDGYTFATVKGAGHEVALYQPAFAFELF
QRFLAHGRLWQG*
back to top

mRNA from alignment at M-pyrifera_M_contig81919:426..914-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81919.19165.1 ID=mRNA_M-pyrifera_M_contig81919.19165.1|Name=mRNA_M-pyrifera_M_contig81919.19165.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig81919:426..914- (Macrocystis pyrifera P11B4 male)
ATGACTGGAGGTGCTAACAAGTGCAGGTATTTGAACAGCCCCAGCGTGCA GACTGCGCTCCATGCGGTGCCGGGCCTGTGGCGGTCGTGCGGCGACCCCA ACCTGCGCTACAGCCAGAGCGGCGCTAACATGCTGCGCTACTACGATCTT CTGTACGAGATGGCGCCCGACCTGCGCGTGCTCGTCTTCTCTGGCGACGT GGACATCAACACCATTCCCCATGCGCTCACGCAGTTCTGTCTCAACCTCC TCGATAGGCCAGTGCGTGAGCCTTGGAAGGCCTGGCGTGTGCAAGGCCCT CGTCTCCCCCAGCTCATCCCCAACAGCGAAGAGAACAGCAACGTCACGGC AGGCTATGCCCAGGTCCACGACGGCTACACCTTTGCCACCGTGAAGGGCG CAGGCCACGAGGTGGCTCTCTATCAGCCCGCCTTTGCTTTCGAGCTATTC CAGAGGTTTCTGGCCCATGGTCGTCTCTGGCAGGGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81919:426..914-

>mRNA_M-pyrifera_M_contig81919.19165.1 ID=mRNA_M-pyrifera_M_contig81919.19165.1|Name=mRNA_M-pyrifera_M_contig81919.19165.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig81919:426..914- (Macrocystis pyrifera P11B4 male)
ATGACTGGAGGTGCTAACAAGTGCAGGTATTTGAACAGCCCCAGCGTGCA
GACTGCGCTCCATGCGGTGCCGGGCCTGTGGCGGTCGTGCGGCGACCCCA
ACCTGCGCTACAGCCAGAGCGGCGCTAACATGCTGCGCTACTACGATCTT
CTGTACGAGATGGCGCCCGACCTGCGCGTGCTCGTCTTCTCTGGCGACGT
GGACATCAACACCATTCCCCATGCGCTCACGCAGTTCTGTCTCAACCTCC
TCGATAGGCCAGTGCGTGAGCCTTGGAAGGCCTGGCGTGTGCAAGGCCCT
CGTCTCCCCCAGCTCATCCCCAACAGCGAAGAGAACAGCAACGTCACGGC
AGGCTATGCCCAGGTCCACGACGGCTACACCTTTGCCACCGTGAAGGGCG
CAGGCCACGAGGTGGCTCTCTATCAGCCCGCCTTTGCTTTCGAGCTATTC
CAGAGGTTTCTGGCCCATGGTCGTCTCTGGCAGGGCTGAATGACTGGAGG
TGCTAACAAGTGCAGGTATTTGAACAGCCCCAGCGTGCAGACTGCGCTCC
ATGCGGTGCCGGGCCTGTGGCGGTCGTGCGGCGACCCCAACCTGCGCTAC
AGCCAGAGCGGCGCTAACATGCTGCGCTACTACGATCTTCTGTACGAGAT
GGCGCCCGACCTGCGCGTGCTCGTCTTCTCTGGCGACGTGGACATCAACA
CCATTCCCCATGCGCTCACGCAGTTCTGTCTCAACCTCCTCGATAGGCCA
GTGCGTGAGCCTTGGAAGGCCTGGCGTGTGCAAGGCCCTCGTCTCCCCCA
GCTCATCCCCAACAGCGAAGAGAACAGCAACGTCACGGCAGGCTATGCCC
AGGTCCACGACGGCTACACCTTTGCCACCGTGAAGGGCGCAGGCCACGAG
GTGGCTCTCTATCAGCCCGCCTTTGCTTTCGAGCTATTCCAGAGGTTTCT
GGCCCATGGTCGTCTCTGGCAGGGCTGA
back to top