mRNA_M-pyrifera_M_contig81851.19152.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig81851.19152.1
Unique NamemRNA_M-pyrifera_M_contig81851.19152.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A4R7HY29_9ACTN (Multidrug efflux pump subunit AcrB n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HY29_9ACTN)

HSP 1 Score: 360 bits (925), Expect = 2.960e-115
Identity = 197/257 (76.65%), Postives = 218/257 (84.82%), Query Frame = 1
Query:    1 ATGESTTITAARISTDGQILRVDGEREIEVRAAFSNDDLTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVRSRMGRPLV 771
            ATG+ T I  A +STDGQI RVDG R+IEVRA FSNDDLTNNL ATE  V   +  AEL   GLPAD++ FDYGQESDNQ+DFASLG A+IVAL LML+LLVVQFRS+VQPLLI LA+PFSF GVF+ALSL+ NPISFFV VGFIAL+GVVVNNTILLVDAANQ RR GLRPG AI +AVERRFRPLVATTITTVVGL PLALSDPFWE+L FTLIGGL+SSTI+VL AFPVFYL +EK RT VRN  R RMG+PL+
Sbjct:  667 ATGDDTVIVDAIVSTDGQIYRVDGNRQIEVRAQFSNDDLTNNLDATEQLVGDLYGEAELAALGLPADAIQFDYGQESDNQDDFASLGQAMIVALVLMLVLLVVQFRSIVQPLLIFLAVPFSFLGVFTALSLSDNPISFFVGVGFIALIGVVVNNTILLVDAANQARRRGLRPGLAIGEAVERRFRPLVATTITTVVGLTPLALSDPFWESLGFTLIGGLVSSTILVLFAFPVFYLAVEKVRTPVRNLARKRMGKPLI 923          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A812RNS2_9DINO (MdtB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RNS2_9DINO)

HSP 1 Score: 358 bits (918), Expect = 1.370e-110
Identity = 196/257 (76.26%), Postives = 217/257 (84.44%), Query Frame = 1
Query:    1 ATGESTTITAARISTDGQILRVDGEREIEVRAAFSNDDLTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVRSRMGRPLV 771
            ATG+ T I  A +STDGQI RVDG R+IEVRA FSNDDLTNNL ATE  V   +  AEL   GLPAD++ FDYGQESDNQ+DFASLG A+IVAL LML+LLVVQFRS+VQPLLI LA+PFSF GVF+ALSL+ NPISFFV VGFIAL+GVVVNNTILLVDAANQ RR GLRPG AI +AVERRFRPLVATT TTVVGL PLALSDPFWE+L FTLIGGL+SSTI+VL AFPVFYL +EK RT VRN  R RMG+PL+
Sbjct: 1270 ATGDDTVIVDAIVSTDGQIYRVDGNRQIEVRAQFSNDDLTNNLDATEQLVGDLYGEAELAALGLPADAIQFDYGQESDNQDDFASLGQAMIVALVLMLVLLVVQFRSIVQPLLIFLAVPFSFLGVFTALSLSDNPISFFVGVGFIALIGVVVNNTILLVDAANQARRRGLRPGLAIGEAVERRFRPLVATTNTTVVGLTPLALSDPFWESLGFTLIGGLVSSTILVLFAFPVFYLAVEKVRTPVRNLARKRMGKPLI 1526          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A7Y2IIK1_9ACTN (Efflux RND transporter permease subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IIK1_9ACTN)

HSP 1 Score: 314 bits (804), Expect = 1.750e-97
Identity = 173/256 (67.58%), Postives = 205/256 (80.08%), Query Frame = 1
Query:    7 GESTTITAARISTDGQILRVDGEREIEVRAAFSNDDLTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTV--RSRMGRPL 768
            GE+T+ TA   S+ GQ+ RVDG R IEVRA FSNDDLT NLTA EDFV   + AAELE RGLPAD+L FD+GQESDN +DFASLG AL+ ALGLM +LL++QFRSL+QP+L+ LAIPFSFFG+ +AL+LT N ISFF  VGFIAL+GVVVNNTILLVD+ANQ RR+GL  G +I QAV RRFRPLVAT ITTV GLLPLALSDPFWE LSFTL+GGL+SST +VL++FPV+Y++       V+N V  + R  R L
Sbjct:  663 GEATSFTAVVNSSIGQVTRVDGRRYIEVRAGFSNDDLTANLTAAEDFVAERYTAAELEARGLPADALAFDFGQESDNADDFASLGPALLAALGLMFVLLIIQFRSLLQPVLVFLAIPFSFFGLTAALALTDNGISFFSGVGFIALIGVVVNNTILLVDSANQARREGLSIGDSIAQAVTRRFRPLVATAITTVAGLLPLALSDPFWEGLSFTLMGGLLSSTFLVLISFPVYYVVATALLELVKNQVVPKRRKARAL 918          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: UPI000E3232FD (efflux RND transporter permease subunit n=1 Tax=Euzebya tangerina TaxID=591198 RepID=UPI000E3232FD)

HSP 1 Score: 296 bits (757), Expect = 1.220e-90
Identity = 168/259 (64.86%), Postives = 203/259 (78.38%), Query Frame = 1
Query:    1 ATGEST-TITAARISTDGQILRVDGEREIEVRAAFSN-DDLTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVRSRMGRPLV 771
            A GE T TIT A +STDGQ+ R DGER +EVRAA+ +   LT  +T T++ V   F  +EL  RGLP ++LGFD+G ESDNQEDFA L +A  +AL LML+L+  QFRS+ Q LLI LAIPFSF GVFS L++T NP+SF V VGFIAL+GV VNNTILLV+AAN+ RR G   G AI++AVERRFRPL+ATTITTVVGLLPL+LSDPFWE+L FTLIGGLISST++VL++FPVFYL +E  RT VRN  R + GRPL+
Sbjct:  660 AVGEETVTITDAIVSTDGQVFRADGERYVEVRAAYDDPSSLTALVTDTQELVEDRF-GSELADRGLPQEALGFDFGLESDNQEDFAGLALAGQIALVLMLVLIAAQFRSIAQSLLIFLAIPFSFLGVFSLLTITDNPLSFLVTVGFIALIGVAVNNTILLVEAANRARRGGATAGEAIREAVERRFRPLIATTITTVVGLLPLSLSDPFWESLGFTLIGGLISSTLLVLVSFPVFYLALEAMRTPVRNWWRRKRGRPLL 917          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A7Y1ZXP9_9ACTN (Efflux RND transporter permease subunit n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZXP9_9ACTN)

HSP 1 Score: 294 bits (752), Expect = 5.430e-90
Identity = 164/253 (64.82%), Postives = 196/253 (77.47%), Query Frame = 1
Query:    7 GESTTITAARISTDGQILRVDGEREIEVRAAFSNDD-LTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVRSRMGR 762
            G++T I A  +STDG+I RVDG+R IEVRA +  D  L+  L  TE  V   F    +E RGLPAD++GFD+G ESDNQ+DFA+LGVA +VAL LMLLL+ +QFRSL Q LLI LAIPFSFFGVF  LS T NP+SF   VGFIAL+GV VNNTILL+D+AN+ RR+G   G AIQ A+  RFRPLVATT+TTVVGLLPL+LSDPFWE+L FTL+GGL+SST++VLLAFP FYL +E  RT +RN VR R GR
Sbjct:  652 GDATVIDAI-VSTDGEIARVDGQRIIEVRAKYDEDQGLSGILNDTEALVQEAFPPVAVEARGLPADAVGFDFGLESDNQDDFAALGVAGMVALFLMLLLITIQFRSLAQSLLIFLAIPFSFFGVFGILSATDNPLSFLAVVGFIALIGVAVNNTILLIDSANRQRREGASAGEAIQYAITNRFRPLVATTLTTVVGLLPLSLSDPFWESLGFTLMGGLVSSTVLVLLAFPAFYLGLESVRTPLRNVVRRRQGR 903          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A2E3TTC6_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A2E3TTC6_9ACTN)

HSP 1 Score: 278 bits (712), Expect = 3.990e-84
Identity = 155/256 (60.55%), Postives = 190/256 (74.22%), Query Frame = 1
Query:    7 GESTTITAARISTDGQILRVDGEREIEVRAAFSNDD-LTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVRSRMGRPLV 771
            G + T+T A +STDG+I R DG++ IEVRA +  D  ++  L  T+  V  +F A E+E RGL A+++ FD+G ESDNQ+DFA L VA ++ALGLML+L+ +QFRS+ Q LLI +AIP SF GVF AL LT NP SF   VGFIAL+GV VNNTILLVD+ANQ RR G   G AIQ AV  RFRPL+ TT+TTVVGLLPLAL DPFWE+L FTL+GGL+SST+ VLL FP FYL +E  RT +RN VR R GR L+
Sbjct:  660 GGTVTVTDAIVSTDGEIARADGQQFIEVRAQYDEDQGISGILNDTQLLVEEDFTATEIESRGLSAEAVTFDFGLESDNQDDFAGLIVAGVIALGLMLILIAIQFRSVAQALLIFMAIPLSFLGVFGALKLTDNPQSFLSGVGFIALIGVAVNNTILLVDSANQRRRAGASAGEAIQHAVTSRFRPLITTTVTTVVGLLPLALGDPFWESLGFTLMGGLVSSTVFVLLCFPTFYLGLESVRTPLRNGVRRRRGRSLL 915          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A7Y2DN88_9ACTN (MMPL family transporter n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DN88_9ACTN)

HSP 1 Score: 273 bits (699), Expect = 5.820e-82
Identity = 156/248 (62.90%), Postives = 190/248 (76.61%), Query Frame = 1
Query:    7 GESTTITAARISTDGQILRVDGEREIEVRAAFSNDDLTNNLTATEDFVTSEFDAAE-LERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVR 747
            GE+TT+  A  ST G I R   +R IEVRA++ NDDLT NL AT++ + ++   AE L   GL AD+L FD+GQESDNQEDFASLG    +AL LM +LLVVQFRS++QP+L+ LAIPFSF G+ +AL+ T N ISFF  VGFIAL+GVVVNNTILLVD+ANQ RR GL  GA+I+QAV RRFRPLVAT +TTV GLLPLALSDPFWE LSFTL+GGL+SST +VLL+FP++YL +     W+    R
Sbjct:  658 GETTTVVTAIESTAGIISRNGPDRFIEVRASYDNDDLTANLNATQELIENDLVPAERLTELGLRADALEFDFGQESDNQEDFASLGTFGSLALLLMFILLVVQFRSVLQPVLVFLAIPFSFLGLTAALAATDNGISFFSGVGFIALIGVVVNNTILLVDSANQARRSGLSLGASIEQAVRRRFRPLVATALTTVAGLLPLALSDPFWEGLSFTLMGGLLSSTFLVLLSFPIYYLSLTSAVEWLAGGSR 905          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A520Y2P7_9ACTN (Efflux RND transporter permease subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y2P7_9ACTN)

HSP 1 Score: 242 bits (617), Expect = 1.170e-70
Identity = 135/251 (53.78%), Postives = 174/251 (69.32%), Query Frame = 1
Query:    7 GESTTITAARISTDGQILRVDGEREIEVRAAFSNDDLTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVRSRMG 759
            G++ T+    ++ D  + R DG R +EVRA F +D +T+   AT+++    + A +L   GL AD+LGFD+G ESDNQE F+SL +A  +AL  ML+LL++QFRS  Q LL+ LAIPFSFFGVF  L +T NP+SFFV +G I L+G+ VNNTILLVD ANQ R  G     AI+ AV RRFRPLVAT+ TTV GLLPLALSDPFWE L+FT+I GL+SST +V+++FP +YL IE  R       R   G
Sbjct:  626 GDAFTVLETDVALDDVVAREDGRRLVEVRARFDDDSVTSTTAATQEYFEDNYTAEDLAALGLEADALGFDFGLESDNQESFSSLPLAFGIALLAMLVLLIIQFRSSAQWLLVFLAIPFSFFGVFGGLLITDNPVSFFVMLGLIGLIGIAVNNTILLVDFANQERALGFDRRQAIENAVRRRFRPLVATSFTTVGGLLPLALSDPFWEGLAFTIIFGLLSSTFLVIMSFPYYYLAIEALRDRFTTPWRRSYG 876          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A351ETA5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ETA5_9ACTN)

HSP 1 Score: 209 bits (532), Expect = 1.410e-63
Identity = 121/193 (62.69%), Postives = 142/193 (73.58%), Query Frame = 1
Query:   10 ESTTITAARISTDGQILRVDGEREIEVRAAFSNDD-LTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTV 585
            E+ TI  ARISTDG I R DG R IEVRA +  D  ++  LT+TE+ +  ++    LE RGL  D+LGFD+G ESDNQ+DFA L  A ++AL LMLLLL +QFRSL Q +LI LAIPFSFFGVF AL L+ NP+SF   VGFIAL+GV VNNTILLVDAANQ RR+G   G +I  AV  RFRPLVATTITTV
Sbjct:    5 ETVTIVDARISTDGSIARTDGARYIEVRAKYDEDSGISGILTSTEELLAEDYPGDVLEARGLAPDALGFDFGLESDNQDDFAGLQYAGLIALALMLLLLTIQFRSLAQSMLIFLAIPFSFFGVFGALMLSDNPLSFLAVVGFIALIGVAVNNTILLVDAANQERRNGTGIGESIGSAVTSRFRPLVATTITTV 197          
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Match: A0A7C7LXQ4_9BACT (Efflux RND transporter permease subunit n=1 Tax=Candidatus Saccharibacteria bacterium TaxID=2026720 RepID=A0A7C7LXQ4_9BACT)

HSP 1 Score: 217 bits (553), Expect = 1.880e-61
Identity = 124/246 (50.41%), Postives = 172/246 (69.92%), Query Frame = 1
Query:    1 ATGESTTITAARISTDGQILRVDGEREIEVRAAFSNDDLTNNLTATEDFVTSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLLLVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGVVVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLPLALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRN 738
            A G ++TIT   +S    + R +G+R +EV A F + D++  +TA +  V  EF  + L   G    +LGFD+GQESD+ E FA+LGV   VA+  +L+LL +QFRS++QPLLI+LAIPFS FGVF  L +T N +SFF A+G I L+G+ VNNTILL D ANQ ++ G     AI  A+++RFRPL+ATTITT+V LLPLAL+DPFWE L++T+I GL SSTI+V+L+FP +Y++ E    + + 
Sbjct:  664 ANGTTSTITETDLSGVRGVARTNGDRYVEVSAGFEDSDVSALVTAAQTAVEEEFTDSRLAEYGDQI-TLGFDFGQESDSAESFAALGVVFPVAILAILVLLAIQFRSILQPLLIILAIPFSIFGVFLGLYVTDNSLSFFSAIGMIGLIGIAVNNTILLTDYANQEKQAGKGRVEAISSALQQRFRPLLATTITTIVALLPLALNDPFWEPLAYTIIFGLASSTILVILSFPYYYIMSETASAFAKR 908          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig81851.19152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R7HY29_9ACTN2.960e-11576.65Multidrug efflux pump subunit AcrB n=1 Tax=Ilumato... [more]
A0A812RNS2_9DINO1.370e-11076.26MdtB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7Y2IIK1_9ACTN1.750e-9767.58Efflux RND transporter permease subunit n=1 Tax=Ac... [more]
UPI000E3232FD1.220e-9064.86efflux RND transporter permease subunit n=1 Tax=Eu... [more]
A0A7Y1ZXP9_9ACTN5.430e-9064.82Efflux RND transporter permease subunit n=1 Tax=Il... [more]
A0A2E3TTC6_9ACTN3.990e-8460.55Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
A0A7Y2DN88_9ACTN5.820e-8262.90MMPL family transporter n=1 Tax=Acidimicrobiales b... [more]
A0A520Y2P7_9ACTN1.170e-7053.78Efflux RND transporter permease subunit n=1 Tax=Ac... [more]
A0A351ETA5_9ACTN1.410e-6362.69Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7C7LXQ4_9BACT1.880e-6150.41Efflux RND transporter permease subunit n=1 Tax=Ca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig81851contigM-pyrifera_M_contig81851:149..922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score140.6
Seed ortholog evalue1e-30
Seed eggNOG ortholog1122179.KB890425_gene3549
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
EggNOG OGs1IPQ1@117747,4NDZG@976,COG0841@1,COG0841@2
COG Functional cat.V
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size774
Cds size774
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816725.7720118-CDS-M-pyrifera_M_contig81851:148..9221622816725.7720118-CDS-M-pyrifera_M_contig81851:148..922Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81851 149..922 -
1692278142.6400132-CDS-M-pyrifera_M_contig81851:148..9221692278142.6400132-CDS-M-pyrifera_M_contig81851:148..922Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig81851 149..922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig81851.19152.1prot_M-pyrifera_M_contig81851.19152.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig81851 149..922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig81851.19152.1

>prot_M-pyrifera_M_contig81851.19152.1 ID=prot_M-pyrifera_M_contig81851.19152.1|Name=mRNA_M-pyrifera_M_contig81851.19152.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=258bp
ATGESTTITAARISTDGQILRVDGEREIEVRAAFSNDDLTNNLTATEDFV
TSEFDAAELERRGLPADSLGFDYGQESDNQEDFASLGVALIVALGLMLLL
LVVQFRSLVQPLLILLAIPFSFFGVFSALSLTGNPISFFVAVGFIALVGV
VVNNTILLVDAANQGRRDGLRPGAAIQQAVERRFRPLVATTITTVVGLLP
LALSDPFWEALSFTLIGGLISSTIVVLLAFPVFYLIIEKPRTWVRNTVRS
RMGRPLV*
back to top

mRNA from alignment at M-pyrifera_M_contig81851:149..922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig81851.19152.1 ID=mRNA_M-pyrifera_M_contig81851.19152.1|Name=mRNA_M-pyrifera_M_contig81851.19152.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig81851:149..922- (Macrocystis pyrifera P11B4 male)
GCGACCGGCGAGTCGACCACGATCACCGCCGCTCGAATCTCGACCGACGG CCAGATCCTCCGAGTCGATGGCGAGCGTGAGATCGAGGTCCGAGCGGCCT TCAGCAACGATGACCTCACCAACAATCTCACCGCGACCGAAGACTTCGTG ACGAGCGAGTTCGACGCCGCCGAACTCGAACGGCGAGGCCTACCGGCCGA CTCCCTCGGTTTCGACTACGGCCAGGAGTCCGACAACCAGGAAGACTTCG CCTCGTTGGGCGTGGCGCTCATCGTCGCACTCGGACTCATGCTCCTGCTT CTCGTGGTGCAGTTCCGATCGCTGGTCCAGCCGCTGTTGATCCTGCTTGC CATCCCGTTCTCGTTCTTCGGGGTGTTCTCGGCGCTGAGCCTCACGGGAA ACCCGATCAGCTTCTTCGTTGCCGTCGGTTTCATCGCGCTGGTCGGTGTC GTGGTCAACAACACGATCCTGCTGGTCGACGCGGCCAACCAAGGTCGTCG AGACGGACTGCGCCCGGGGGCCGCGATCCAGCAGGCCGTCGAGCGCCGCT TCCGTCCACTGGTGGCCACCACCATCACCACCGTGGTCGGTCTGTTGCCG CTCGCACTGAGTGATCCGTTCTGGGAGGCACTGAGCTTCACCTTGATCGG TGGTCTGATCAGCTCGACCATCGTGGTGTTGCTTGCGTTCCCGGTCTTCT ACCTCATCATCGAAAAGCCACGGACCTGGGTCCGCAACACCGTTCGCTCG CGTATGGGTCGCCCGCTGGTCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig81851:149..922-

>mRNA_M-pyrifera_M_contig81851.19152.1 ID=mRNA_M-pyrifera_M_contig81851.19152.1|Name=mRNA_M-pyrifera_M_contig81851.19152.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1548bp|location=Sequence derived from alignment at M-pyrifera_M_contig81851:149..922- (Macrocystis pyrifera P11B4 male)
GCGACCGGCGAGTCGACCACGATCACCGCCGCTCGAATCTCGACCGACGG
CCAGATCCTCCGAGTCGATGGCGAGCGTGAGATCGAGGTCCGAGCGGCCT
TCAGCAACGATGACCTCACCAACAATCTCACCGCGACCGAAGACTTCGTG
ACGAGCGAGTTCGACGCCGCCGAACTCGAACGGCGAGGCCTACCGGCCGA
CTCCCTCGGTTTCGACTACGGCCAGGAGTCCGACAACCAGGAAGACTTCG
CCTCGTTGGGCGTGGCGCTCATCGTCGCACTCGGACTCATGCTCCTGCTT
CTCGTGGTGCAGTTCCGATCGCTGGTCCAGCCGCTGTTGATCCTGCTTGC
CATCCCGTTCTCGTTCTTCGGGGTGTTCTCGGCGCTGAGCCTCACGGGAA
ACCCGATCAGCTTCTTCGTTGCCGTCGGTTTCATCGCGCTGGTCGGTGTC
GTGGTCAACAACACGATCCTGCTGGTCGACGCGGCCAACCAAGGTCGTCG
AGACGGACTGCGCCCGGGGGCCGCGATCCAGCAGGCCGTCGAGCGCCGCT
TCCGTCCACTGGTGGCCACCACCATCACCACCGTGGTCGGTCTGTTGCCG
CTCGCACTGAGTGATCCGTTCTGGGAGGCACTGAGCTTCACCTTGATCGG
TGGTCTGATCAGCTCGACCATCGTGGTGTTGCTTGCGTTCCCGGTCTTCT
ACCTCATCATCGAAAAGCCACGGACCTGGGTCCGCAACACCGTTCGCTCG
CGTATGGGTCGCCCGCTGGTCTGAGCGACCGGCGAGTCGACCACGATCAC
CGCCGCTCGAATCTCGACCGACGGCCAGATCCTCCGAGTCGATGGCGAGC
GTGAGATCGAGGTCCGAGCGGCCTTCAGCAACGATGACCTCACCAACAAT
CTCACCGCGACCGAAGACTTCGTGACGAGCGAGTTCGACGCCGCCGAACT
CGAACGGCGAGGCCTACCGGCCGACTCCCTCGGTTTCGACTACGGCCAGG
AGTCCGACAACCAGGAAGACTTCGCCTCGTTGGGCGTGGCGCTCATCGTC
GCACTCGGACTCATGCTCCTGCTTCTCGTGGTGCAGTTCCGATCGCTGGT
CCAGCCGCTGTTGATCCTGCTTGCCATCCCGTTCTCGTTCTTCGGGGTGT
TCTCGGCGCTGAGCCTCACGGGAAACCCGATCAGCTTCTTCGTTGCCGTC
GGTTTCATCGCGCTGGTCGGTGTCGTGGTCAACAACACGATCCTGCTGGT
CGACGCGGCCAACCAAGGTCGTCGAGACGGACTGCGCCCGGGGGCCGCGA
TCCAGCAGGCCGTCGAGCGCCGCTTCCGTCCACTGGTGGCCACCACCATC
ACCACCGTGGTCGGTCTGTTGCCGCTCGCACTGAGTGATCCGTTCTGGGA
GGCACTGAGCTTCACCTTGATCGGTGGTCTGATCAGCTCGACCATCGTGG
TGTTGCTTGCGTTCCCGGTCTTCTACCTCATCATCGAAAAGCCACGGACC
TGGGTCCGCAACACCGTTCGCTCGCGTATGGGTCGCCCGCTGGTCTGA
back to top